Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Reverse (-)

17114680 .. 17116183

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCGGCAGCAGAAGCAAGGGCTGTGTGGCAGAGAACAGCTAATCGTTGTTTCGTCCAGGAGGATGCCAAAAGAGCTCCCAAGTTAGCTTGCTGCCAATCCTCTTCTTCGACAACTAGGCAGGTTGATGCTGGGCCTGCAAATGTAGCAGAAGGGCCATATCATCCTGCCACTGGTTTCATGCCTATCAATCGGAATCCTTCATATTCTAGTCTACCCCCGGATACAAGATGGTGGCTGCAAATGCAACCTAGCTATGGGTACCAAAAAGATTTTACATACGAACAGTTAAGTGCATTGGAGGCTGACATGGAAACACTGAGAGCTGGGTTCGTGAAATCAACACCCAAAACTAGCGAGGTCCACCAGCAAAAAGCAGAATTCACTGACGCAGTCTCCGCTGATTGTATGAAGACAGGTTACGAAGTCCAAAAGCAAGATGTAAGTGCCAAATATAGTAAGAACATGCAGGAACCTCTTCAATACGAAATGAAGAAAAAATATGAAATAATGGGGATGGATACCATTGATTGCCCAGTTTCCAATCAACCCAAGGAGTTTTGTTGTGACTATCCTTGGATTGGAGGTGGGAGGGCTGAACCATGGTGGCGGACAACGGACAGAGATGAATTGGCTTCCTTGGTTGCTCAGAAGTCGCTTAACCATATTGAGAACTGCGACCTTCCCCCACCTCAGAAAATGTATCATAAGACACATCCATATGCTGATATTGGATGTTCTGACCGGAATGTGATATTGGGGACATCTTTAGATGCAAAGGCCCAAGCAACCGGTCTTTCCAGTATGACCACTCCTGCACATGGCTATCCTGATTCTGGAAAGGGAGAAGCATCTGGAGAAGGGCACTCCGAAAAGTCATTCAGAGACATAATGGAGATACAACAACTTTCTGAGGGTGAGCCTACAAAAGCTCAGCTAATGGAAGCACTCTGCCATTCTCAAACACGAGCAAGGGAAGCCGAGAAGGCAGCAAAGCAAGCTTATGCCGAGAAGGAGCACATCTTTAAGCTCTTCTTCCGACAAGCCTCTCAACTCTTTGCCTATAAGCAGTGGTTCCAATTGCTGCAACTGGAAAGTCTTTACCTCCAGATTAAAAACAATGAACAACCTCCAAGTGCCACTGTTTTTCCGGAGGGACTTCTATGGATGCCAGCCAAAGGCAAGAAACTGCGGAGGAACTGGCGTAAGGGTGCCAAGGGTAAAAGAGGAAGGAGGGCCGAACCCAGGCACGACATTGCAACTTATGCTGTTGCTTTTGCATTGGGGTTCAGTCTCGTTGGTGCTGGCTTGCTCCTGGGATGGACTGTGGGGTGGATGTTACCCCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

451

Amino Acids

50.63

Weight (kDa)

8.52

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	261, 1211
AccI	GTMKAC	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	1150
AciI	CCGC	4 cut(s)	5, 399, 610, 1192
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	7 cut(s)	173, 257, 581, 821, 836, 1178, 1245
AgeI	ACCGGT	1 cut(s)	791
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	3 cut(s)	57, 1244, 1314
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AluBI	AGCT	9 cut(s)	41, 77, 89, 255, 326, 932, 937, 1001, 1030
AluI	AGCT	9 cut(s)	41, 77, 89, 255, 326, 932, 937, 1001, 1030
Alw21I	GWGCWC	2 cut(s)	79, 1020
Alw26I	GTCTC	3 cut(s)	400, 879, 1298
Aor13HI	TCCGGA	1 cut(s)	1150
AoxI	GGCC	4 cut(s)	134, 155, 780, 1236
ApeKI	GCWGC	5 cut(s)	8, 93, 238, 989, 1084
ApoI	RAATTY	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	791
Asp700I	GAANNNNTTC	1 cut(s)	477
Asp718I	GGTACC	1 cut(s)	261
AspS9I	GGNCC	5 cut(s)	134, 155, 361, 781, 1236
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	867
BanI	GGYRCC	2 cut(s)	261, 1211
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
BauI	CACGAG	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	2 cut(s)	79, 1020
BbvI	GCAGC	5 cut(s)	20, 80, 225, 1001, 1071
BccI	CCATC	3 cut(s)	225, 511, 1314
BciT130I	CCWGG	3 cut(s)	59, 1246, 1316
BciVI	GTATCC	2 cut(s)	217, 514
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	400, 879, 1298
BfaI	CTAG	5 cut(s)	117, 210, 252, 354, 1351
BfuAI	ACCTGC	1 cut(s)	112
BfuI	GTATCC	2 cut(s)	217, 514
BglI	GCCNNNNNGGC	1 cut(s)	986
BisI	GCNGC	6 cut(s)	6, 9, 94, 239, 990, 1085
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	6 cut(s)	7, 10, 95, 240, 991, 1086
Bme1390I	CCNGG	4 cut(s)	59, 221, 1246, 1316
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	5 cut(s)	134, 155, 361, 781, 1236
BmiI	GGNNCC	4 cut(s)	263, 474, 1076, 1213
BmrFI	CCNGG	4 cut(s)	59, 221, 1246, 1316
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	5 cut(s)	55, 118, 763, 860, 1158
BmuI	ACTGGG	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	2 cut(s)	876, 1091
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	8 cut(s)	219, 552, 575, 602, 639, 1215, 1244, 1315
BsaWI	WCCGGW	3 cut(s)	744, 791, 1150
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	7 cut(s)	173, 257, 581, 821, 836, 1178, 1245
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	5 cut(s)	178, 536, 801, 1095, 1205
Bse3DI	GCAATG	1 cut(s)	1254
BseAI	TCCGGA	1 cut(s)	1150
BseBI	CCWGG	3 cut(s)	59, 1246, 1316
BseDI	CCNNGG	8 cut(s)	219, 552, 575, 602, 639, 1215, 1244, 1315
BseGI	GGATG	8 cut(s)	70, 163, 522, 715, 740, 1173, 1325, 1341
BseLI	CCNNNNNNNGG	7 cut(s)	173, 257, 581, 821, 836, 1178, 1245
BseMI	GCAATG	1 cut(s)	1254
BseMII	CTCAG	5 cut(s)	311, 662, 707, 903, 947
BseNI	ACTGG	5 cut(s)	178, 536, 801, 1095, 1205
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	5 cut(s)	20, 80, 225, 1001, 1071
BseYI	CCCAGC	2 cut(s)	131, 326
BsgI	GTGCAG	1 cut(s)	801
BshFI	GGCC	4 cut(s)	136, 157, 782, 1238
BshNI	GGYRCC	2 cut(s)	261, 1211
BshTI	ACCGGT	1 cut(s)	791
BsiHKAI	GWGCWC	2 cut(s)	79, 1020
BsiSI	CCGG	4 cut(s)	221, 745, 792, 1151
BslFI	GGGAC	2 cut(s)	775, 1170
BslI	CCNNNNNNNGG	7 cut(s)	173, 257, 581, 821, 836, 1178, 1245
BsmAI	GTCTC	3 cut(s)	400, 879, 1298
BsmFI	GGGAC	2 cut(s)	775, 1170
BsnI	GGCC	4 cut(s)	136, 157, 782, 1238
Bsp1286I	GDGCHC	3 cut(s)	79, 867, 1020
Bsp13I	TCCGGA	1 cut(s)	1150
Bsp1720I	GCTNAGC	1 cut(s)	933
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	4 cut(s)	5, 399, 610, 1192
BspANI	GGCC	4 cut(s)	136, 157, 782, 1238
BspCNI	CTCAG	5 cut(s)	312, 661, 706, 904, 946
BspEI	TCCGGA	1 cut(s)	1150
BspLI	GGNNCC	4 cut(s)	263, 474, 1076, 1213
BspMI	ACCTGC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	1037
BspT107I	GGYRCC	2 cut(s)	261, 1211
BsrDI	GCAATG	1 cut(s)	1254
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	5 cut(s)	178, 536, 801, 1095, 1205
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	8 cut(s)	219, 552, 575, 602, 639, 1215, 1244, 1315
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	5 cut(s)	552, 575, 602, 639, 1215
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	3 cut(s)	59, 1246, 1316
Bst4CI	ACNGT	3 cut(s)	288, 1144, 1327
Bst6I	CTCTTC	3 cut(s)	109, 483, 1037
BstAPI	GCANNNNNTGC	1 cut(s)	1265
BstC8I	GCNNGC	6 cut(s)	91, 138, 999, 1173, 1306, 1310
BstDEI	CTNAG	5 cut(s)	320, 648, 693, 912, 933
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	8 cut(s)	70, 163, 522, 715, 740, 1173, 1325, 1341
BstMAI	GTCTC	3 cut(s)	400, 879, 1298
BstNI	CCWGG	3 cut(s)	59, 1246, 1316
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	4 cut(s)	57, 219, 1244, 1314
BstSLI	GKGCMC	1 cut(s)	867
BstV1I	GCAGC	5 cut(s)	20, 80, 225, 1001, 1071
BstV2I	GAAGAC	1 cut(s)	419
BsuI	GTATCC	2 cut(s)	217, 514
BsuRI	GGCC	4 cut(s)	136, 157, 782, 1238
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	8 cut(s)	70, 163, 522, 715, 740, 1173, 1325, 1341
BtsI	GCAGTG	1 cut(s)	1076
BtsIMutI	CAGTG	5 cut(s)	171, 317, 384, 1076, 1140
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	6 cut(s)	91, 138, 999, 1173, 1306, 1310
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	5 cut(s)	134, 155, 361, 781, 1236
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	262
CspAI	ACCGGT	1 cut(s)	791
CviAII	CATG	5 cut(s)	181, 310, 466, 603, 821
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	5 cut(s)	320, 648, 693, 912, 933
Eam1104I	CTCTTC	3 cut(s)	109, 483, 1037
EarI	CTCTTC	3 cut(s)	109, 483, 1037
EciI	GGCGGA	1 cut(s)	625
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	5 cut(s)	552, 575, 602, 639, 1215
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	3 cut(s)	57, 1244, 1314
EcoT14I	CCWWGG	5 cut(s)	552, 575, 602, 639, 1215
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	5 cut(s)	552, 575, 602, 639, 1215
FaeI	CATG	5 cut(s)	184, 313, 469, 606, 824
FalI	AAGNNNNNCTT	2 cut(s)	1019, 1051
FaqI	GGGAC	2 cut(s)	775, 1170
FatI	CATG	5 cut(s)	180, 309, 465, 602, 820
FauNDI	CATATG	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	6 cut(s)	6, 9, 94, 239, 990, 1085
FokI	GGATG	8 cut(s)	77, 150, 529, 702, 747, 1180, 1332, 1348
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	6 cut(s)	6, 9, 94, 239, 990, 1085
FspBI	CTAG	5 cut(s)	117, 210, 252, 354, 1351
GluI	GCNGC	6 cut(s)	6, 9, 94, 239, 990, 1085
GsaI	CCCAGC	2 cut(s)	135, 330
GsuI	CTGGAG	2 cut(s)	876, 1091
HaeIII	GGCC	4 cut(s)	136, 157, 782, 1238
HapII	CCGG	4 cut(s)	221, 745, 792, 1151
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	5 cut(s)	184, 313, 469, 606, 824
HindIII	AAGCTT	1 cut(s)	999
HinfI	GANTC	2 cut(s)	196, 833
HpaII	CCGG	4 cut(s)	221, 745, 792, 1151
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	2 cut(s)	215, 364
Hpy188I	TCNGA	8 cut(s)	195, 651, 696, 742, 871, 884, 913, 1040
Hpy188III	TCNNGA	6 cut(s)	334, 830, 837, 855, 1108, 1151
Hpy8I	GTNNAC	2 cut(s)	215, 364
HpyAV	CCTTC	7 cut(s)	146, 210, 692, 854, 979, 1006, 1224
HpyCH4III	ACNGT	3 cut(s)	288, 1144, 1327
HpyF3I	CTNAG	5 cut(s)	320, 648, 693, 912, 933
Hsp92II	CATG	5 cut(s)	184, 313, 469, 606, 824
Kpn2I	TCCGGA	1 cut(s)	1150
KpnI	GGTACC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	1037
LmnI	GCTCC	3 cut(s)	82, 1015, 1317
Lsp1109I	GCAGC	5 cut(s)	20, 80, 225, 1001, 1071
LweI	GCATC	5 cut(s)	55, 118, 763, 860, 1158
MaeI	CTAG	5 cut(s)	117, 210, 252, 354, 1351
MaeIII	GTNAC	3 cut(s)	419, 566, 1338
MboII	GAAGA	7 cut(s)	96, 99, 424, 470, 505, 1024, 1027
MfeI	CAATTG	1 cut(s)	1079
MhlI	GDGCHC	3 cut(s)	79, 867, 1020
MluCI	AATT	3 cut(s)	380, 629, 1079
MmeI	TCCRAC	1 cut(s)	1063
MroI	TCCGGA	1 cut(s)	1150
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	4 cut(s)	290, 660, 1026, 1113
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	4 cut(s)	221, 745, 792, 1151
MspR9I	CCNGG	4 cut(s)	59, 221, 1246, 1316
MunI	CAATTG	1 cut(s)	1079
MvaI	CCWGG	3 cut(s)	59, 1246, 1316
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	721
NlaIII	CATG	5 cut(s)	184, 313, 469, 606, 824
NlaIV	GGNNCC	4 cut(s)	263, 474, 1076, 1213
NmeAIII	GCCGAG	2 cut(s)	1006, 1033
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	1037
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	196, 833
PflFI	GACNNNGTC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	57
PinAI	ACCGGT	1 cut(s)	791
PkrI	GCNGC	6 cut(s)	7, 10, 95, 240, 991, 1086
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	57, 1244, 1314
PspFI	CCCAGC	2 cut(s)	131, 326
PspGI	CCWGG	3 cut(s)	57, 1244, 1314
PspN4I	GGNNCC	4 cut(s)	263, 474, 1076, 1213
PspPI	GGNCC	5 cut(s)	134, 155, 361, 781, 1236
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	1037
SaqAI	TTAA	4 cut(s)	290, 660, 1026, 1113
SatI	GCNGC	6 cut(s)	6, 9, 94, 239, 990, 1085
Sau96I	GGNCC	5 cut(s)	134, 155, 361, 781, 1236
ScrFI	CCNGG	4 cut(s)	59, 221, 1246, 1316
SduI	GDGCHC	3 cut(s)	79, 867, 1020
SfaNI	GCATC	5 cut(s)	55, 118, 763, 860, 1158
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	3 cut(s)	380, 629, 1079
SsiI	CCGC	4 cut(s)	5, 399, 610, 1192
SspMI	CTAG	5 cut(s)	117, 210, 252, 354, 1351
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	4 cut(s)	57, 219, 1244, 1314
StyI	CCWWGG	5 cut(s)	552, 575, 602, 639, 1215
TaaI	ACNGT	3 cut(s)	288, 1144, 1327
TaqI	TCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	380, 629, 1079
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	196, 833
Tru1I	TTAA	4 cut(s)	290, 660, 1026, 1113
Tru9I	TTAA	4 cut(s)	290, 660, 1026, 1113
TscAI	CASTG	5 cut(s)	178, 324, 391, 1076, 1147
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	5 cut(s)	8, 93, 238, 989, 1084
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	7 cut(s)	169, 192, 425, 506, 519, 642, 1137
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	5 cut(s)	178, 324, 391, 1076, 1147
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	5 cut(s)	117, 210, 252, 354, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.