Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Forward (+)

1392631 .. 1394345

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCCTTATAACTCAAATCCGGAGCTAACACCCAGCACTAGGTGGTGGTTGAACCTGGAACCTAACTTTGGGCCTCAGAAGGAATTTATCTACGATCAGCAAAAGAGCCTGGACGCTGAACTTGAAGTTTTGAATTCTGGATATATTAATAAAACTGCCGTCATAAGTGATTATTATCAGTGCAAGGAGGTATTTAGTACTCAGAGTGATAGTGAGAAGGGTGTCAACAGTTTTGTGGAGAAACCATGCAAGGTTTCAGTCACTTCTCCAAGAAATGACCCGAGTAAGAGAGTGCAAGAACTCAAGGCTGGAATTGGTGATGGTCCGCAGCTGCCTAAGAAAAGGGATACAGGGGAGTTTTGGTACTCCGATGATGATTTCATGAACTTGGATTCTTTCAGCAGCTTGGATTCTGAACAAAACAAAAAGATGTCTCCTGATTTGGATTCCCAATGGGTGGGAAGTGAGAAGTCTGAACCCTGGTGGCGCTCTGCTGGTAAAGATGAGTTGGCTTCCTTGGTTGCTCAGAAATCACTTGAAAATGTTGAGAATTGTGATCTTCCACGGCCCCAGATTAAGCATAGTAGGATGCGTCCTATCGCTTCTACAAAGTTTCCTGACCCTAATTTGTCCTTAGATCAGATGACTGAACTGGGATTGTCCAATGTCACCACTTATACTCAGGGAAGCTTTACTTCAGGTCACTCAATATTTGATTCAGACAGTCCACTAAGCCACAACAATGATTGTGCTGCAACCAACCAAGATGAGCCAGACGATGAACGAAGTAAAGCTCAGCTGCTGGAAGCTTTGTGTCATTCTCAAACACGAGCTAGGAAAGCTGAGAAAGCCGCACAGCAGGCCTATACAGAGAAGGAGCACATTATCAGTCTCTTTTTCAAACAGGCATCACAGCTGTTTGCCTACAAGCAGTGGCTCCACTTGCTGCAAATCGAGAACTTTTGCCTGCAGCTTAATAAAAAAGATGGCTTACCATGGTCCCCATACAAAGGCAGACCCATGAAGAAGAAGGCTCATCGCAGGGCAGGAAAGAGGAGCGGCAGCGGGCCAAGGTATGAGATCAGCAAGGGTGCTGTTGCTTTTGCAGTAGGATTAGGTCTTGCCGGTGCGGGCTTGCTCCTTGGATGGACTATGGGGTGGTTGTTTCCAATCGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

44.35

Weight (kDa)

6.22

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccBSI	CCGCTC	1 cut(s)	1059
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	5 cut(s)	326, 852, 1059, 1065, 1130
AcsI	RAATTY	2 cut(s)	83, 133
AcuI	CTGAAG	1 cut(s)	681
AdeI	CACNNNGTG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	199, 365
AfiI	CCNNNNNNNGG	4 cut(s)	39, 68, 457, 1010
AgsI	TTSAA	5 cut(s)	52, 125, 133, 539, 901
AjnI	CCWGG	3 cut(s)	54, 108, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
Alw21I	GWGCWC	1 cut(s)	882
Alw26I	GTCTC	2 cut(s)	438, 896
AlwNI	CAGNNNCTG	1 cut(s)	802
Ama87I	CYCGRG	1 cut(s)	280
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	4 cut(s)	71, 566, 861, 1067
ApeKI	GCWGC	8 cut(s)	328, 331, 402, 752, 799, 946, 970, 1062
ApoI	RAATTY	2 cut(s)	83, 133
AseI	ATTAAT	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	5 cut(s)	71, 323, 567, 999, 1067
AsuHPI	GGTGA	2 cut(s)	329, 661
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	323, 999
BauI	CACGAG	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	882
BbvI	GCAGC	8 cut(s)	318, 340, 414, 739, 786, 933, 982, 1074
BccI	CCATC	3 cut(s)	314, 980, 1140
BceAI	ACGGC	2 cut(s)	143, 581
BciT130I	CCWGG	3 cut(s)	56, 110, 481
BciVI	GTATCC	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	438, 896
BfaI	CTAG	2 cut(s)	39, 834
BfmI	CTRYAG	1 cut(s)	968
BfoI	RGCGCY	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	340
BlpI	GCTNAGC	1 cut(s)	795
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	56, 110, 481
Bme18I	GGWCC	2 cut(s)	323, 999
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	5 cut(s)	71, 323, 567, 999, 1067
BmiI	GGNNCC	4 cut(s)	60, 569, 938, 1001
BmrFI	CCNGG	3 cut(s)	56, 110, 481
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	2 cut(s)	579, 917
BmuI	ACTGGG	1 cut(s)	662
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	6 cut(s)	479, 516, 563, 995, 1070, 1141
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 68, 457, 1010
Bse118I	RCCGGY	1 cut(s)	1124
Bse1I	ACTGG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	3 cut(s)	56, 110, 481
BseDI	CCNNGG	6 cut(s)	479, 516, 563, 995, 1070, 1141
BseGI	GGATG	2 cut(s)	594, 1151
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	39, 68, 457, 1010
BseMII	CTCAG	6 cut(s)	89, 215, 539, 695, 809, 834
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	1069
BseXI	GCAGC	8 cut(s)	318, 340, 414, 739, 786, 933, 982, 1074
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	4 cut(s)	73, 568, 863, 1069
BsiHKAI	GWGCWC	1 cut(s)	882
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	20, 1125
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	4 cut(s)	39, 68, 457, 1010
BsmAI	GTCTC	2 cut(s)	438, 896
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	4 cut(s)	73, 568, 863, 1069
BsoBI	CYCGRG	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	94, 556, 637, 1080
Bsp1720I	GCTNAGC	1 cut(s)	795
Bsp19I	CCATGG	1 cut(s)	995
BspACI	CCGC	5 cut(s)	326, 852, 1059, 1065, 1130
BspANI	GGCC	4 cut(s)	73, 568, 863, 1069
BspCNI	CTCAG	6 cut(s)	88, 214, 538, 694, 808, 835
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	60, 569, 938, 1001
BspMAI	CTGCAG	1 cut(s)	972
BsrBI	CCGCTC	1 cut(s)	1059
BsrFI	RCCGGY	1 cut(s)	1124
BsrI	ACTGG	1 cut(s)	657
BssAI	RCCGGY	1 cut(s)	1124
BssECI	CCNNGG	6 cut(s)	479, 516, 563, 995, 1070, 1141
BssMI	GATC	4 cut(s)	94, 556, 637, 1080
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	4 cut(s)	516, 995, 1070, 1141
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	3 cut(s)	56, 110, 481
Bst4CI	ACNGT	2 cut(s)	230, 725
BstC8I	GCNNGC	5 cut(s)	861, 968, 1067, 1132, 1136
BstDEI	CTNAG	9 cut(s)	75, 201, 336, 525, 634, 681, 731, 795, 843
BstDSI	CCRYGG	2 cut(s)	563, 995
BstF5I	GGATG	2 cut(s)	594, 1151
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	4 cut(s)	97, 559, 640, 1083
BstMAI	GTCTC	2 cut(s)	438, 896
BstMBI	GATC	4 cut(s)	94, 556, 637, 1080
BstMWI	GCNNNNNNNGC	4 cut(s)	839, 848, 860, 943
BstNI	CCWGG	3 cut(s)	56, 110, 481
BstSCI	CCNGG	3 cut(s)	54, 108, 479
BstSFI	CTRYAG	1 cut(s)	968
BstV1I	GCAGC	8 cut(s)	318, 340, 414, 739, 786, 933, 982, 1074
BstXI	CCANNNNNNTGG	1 cut(s)	1176
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	73, 568, 863, 1069
BtgI	CCRYGG	2 cut(s)	563, 995
BtgZI	GCGATG	1 cut(s)	1022
BtsCI	GGATG	2 cut(s)	594, 1151
BtsI	GCAGTG	1 cut(s)	938
BtsIMutI	CAGTG	2 cut(s)	185, 938
Cac8I	GCNNGC	5 cut(s)	861, 968, 1067, 1132, 1136
CaiI	CAGNNNCTG	1 cut(s)	802
CciI	TCATGA	1 cut(s)	381
CfoI	GCGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	1124
Cfr13I	GGNCC	5 cut(s)	71, 323, 567, 999, 1067
CseI	GACGC	2 cut(s)	122, 581
Csp6I	GTAC	2 cut(s)	198, 364
CviAII	CATG	4 cut(s)	246, 382, 996, 1021
CviQI	GTAC	2 cut(s)	198, 364
DdeI	CTNAG	9 cut(s)	75, 201, 336, 525, 634, 681, 731, 795, 843
DpnI	GATC	4 cut(s)	96, 558, 639, 1082
DpnII	GATC	4 cut(s)	94, 556, 637, 1080
DraIII	CACNNNGTG	1 cut(s)	42
Eco130I	CCWWGG	4 cut(s)	516, 995, 1070, 1141
Eco147I	AGGCCT	1 cut(s)	863
Eco47I	GGWCC	2 cut(s)	323, 999
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	3 cut(s)	54, 108, 479
EcoT14I	CCWWGG	4 cut(s)	516, 995, 1070, 1141
ErhI	CCWWGG	4 cut(s)	516, 995, 1070, 1141
FaeI	CATG	4 cut(s)	249, 385, 999, 1024
FalI	AAGNNNNNCTT	2 cut(s)	679, 711
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	4 cut(s)	245, 381, 995, 1020
FauI	CCCGC	2 cut(s)	1058, 1123
FokI	GGATG	2 cut(s)	601, 1158
FspBI	CTAG	2 cut(s)	39, 834
GlaI	GCGC	1 cut(s)	488
GsaI	CCCAGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	4 cut(s)	73, 568, 863, 1069
HapII	CCGG	2 cut(s)	20, 1125
HgaI	GACGC	2 cut(s)	122, 581
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	249, 385, 999, 1024
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	2 cut(s)	688, 807
HinfI	GANTC	4 cut(s)	392, 410, 446, 716
HpaII	CCGG	2 cut(s)	20, 1125
HphI	GGTGA	2 cut(s)	329, 661
Hpy166II	GTNNAC	2 cut(s)	226, 728
Hpy188I	TCNGA	8 cut(s)	78, 204, 370, 415, 475, 528, 642, 721
Hpy188III	TCNNGA	6 cut(s)	20, 138, 382, 437, 617, 955
Hpy8I	GTNNAC	2 cut(s)	226, 728
HpyAV	CCTTC	4 cut(s)	73, 211, 868, 1024
HpyCH4III	ACNGT	2 cut(s)	230, 725
HpyCH4V	TGCA	7 cut(s)	183, 249, 295, 755, 949, 970, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	839, 848, 860, 943
HpyF3I	CTNAG	9 cut(s)	75, 201, 336, 525, 634, 681, 731, 795, 843
Hsp92II	CATG	4 cut(s)	249, 385, 999, 1024
HspAI	GCGC	1 cut(s)	487
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	94, 556, 637, 1080
LmnI	GCTCC	5 cut(s)	22, 877, 942, 1056, 1143
Lsp1109I	GCAGC	8 cut(s)	318, 340, 414, 739, 786, 933, 982, 1074
LweI	GCATC	2 cut(s)	579, 917
MaeI	CTAG	2 cut(s)	39, 834
MaeIII	GTNAC	3 cut(s)	259, 667, 701
MalI	GATC	4 cut(s)	96, 558, 639, 1082
MbiI	CCGCTC	1 cut(s)	1059
MboI	GATC	4 cut(s)	94, 556, 637, 1080
MboII	GAAGA	3 cut(s)	551, 1036, 1039
MhlI	GDGCHC	1 cut(s)	882
MluCI	AATT	5 cut(s)	83, 133, 312, 550, 625
MnlI	CCTC	3 cut(s)	84, 181, 1047
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	3 cut(s)	147, 576, 975
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	4 cut(s)	331, 799, 916, 1065
MspI	CCGG	2 cut(s)	20, 1125
MspR9I	CCNGG	3 cut(s)	56, 110, 481
MvaI	CCWGG	3 cut(s)	56, 110, 481
MwoI	GCNNNNNNNGC	4 cut(s)	839, 848, 860, 943
NcoI	CCATGG	1 cut(s)	995
NdeII	GATC	4 cut(s)	94, 556, 637, 1080
NlaIII	CATG	4 cut(s)	249, 385, 999, 1024
NlaIV	GGNNCC	4 cut(s)	60, 569, 938, 1001
NmuCI	GTSAC	3 cut(s)	259, 667, 701
PagI	TCATGA	1 cut(s)	381
PceI	AGGCCT	1 cut(s)	863
PfeI	GAWTC	4 cut(s)	392, 410, 446, 716
PflMI	CCANNNNNTGG	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	54, 108, 479
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	3 cut(s)	54, 108, 479
PspN4I	GGNNCC	4 cut(s)	60, 569, 938, 1001
PspPI	GGNCC	5 cut(s)	71, 323, 567, 999, 1067
PstI	CTGCAG	1 cut(s)	972
PstNI	CAGNNNCTG	1 cut(s)	802
PvuII	CAGCTG	3 cut(s)	331, 799, 916
RsaI	GTAC	2 cut(s)	199, 365
RsaNI	GTAC	2 cut(s)	198, 364
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	147, 576, 975
Sau3AI	GATC	4 cut(s)	94, 556, 637, 1080
Sau96I	GGNCC	5 cut(s)	71, 323, 567, 999, 1067
ScaI	AGTACT	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	56, 110, 481
SduI	GDGCHC	1 cut(s)	882
SfaNI	GCATC	2 cut(s)	579, 917
SfcI	CTRYAG	1 cut(s)	968
SinI	GGWCC	2 cut(s)	323, 999
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	5 cut(s)	83, 133, 312, 550, 625
SseBI	AGGCCT	1 cut(s)	863
SsiI	CCGC	5 cut(s)	326, 852, 1059, 1065, 1130
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	2 cut(s)	39, 834
StuI	AGGCCT	1 cut(s)	863
StyD4I	CCNGG	3 cut(s)	54, 108, 479
StyI	CCWWGG	4 cut(s)	516, 995, 1070, 1141
TaaI	ACNGT	2 cut(s)	230, 725
TaqI	TCGA	2 cut(s)	954, 1173
TasI	AATT	5 cut(s)	83, 133, 312, 550, 625
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	2 cut(s)	854, 1062
TfiI	GAWTC	4 cut(s)	392, 410, 446, 716
Tru1I	TTAA	3 cut(s)	147, 576, 975
Tru9I	TTAA	3 cut(s)	147, 576, 975
TscAI	CASTG	2 cut(s)	185, 938
TseFI	GTSAC	3 cut(s)	259, 667, 701
TseI	GCWGC	8 cut(s)	328, 331, 402, 752, 799, 946, 970, 1062
Tsp45I	GTSAC	3 cut(s)	259, 667, 701
TspDTI	ATGAA	4 cut(s)	370, 398, 795, 1037
TspRI	CASTG	2 cut(s)	185, 938
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	323, 999
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	2 cut(s)	83, 133
XspI	CTAG	2 cut(s)	39, 834
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.