Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006872.1

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Reverse (-)

168185 .. 168673

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006872.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgcctagtttgattttgatcaaattatatgcgttcattttcagccacaacaatgatcatactgcaaccaaccaagatgagcgagacgatgaacgaagtaaagctcagctgctggaagctttgtgtcattctcaaacacgagctaggaaagctgagaaagctgcacagcaggcctatacagagaaggagcacatcatcagtctctttttcaaacaggcatcacagctgtttgcctacaagcagtggctccatttgctgcaaatcgagaacttttgcctgcagcttaataaaaaagatggcttaccatggtccccatacaaaggcaggcccatgaagaagaaggctcaccgcagggctggaaagaggagcggcagcaggccaaggtatgagatcagcaagggtgctgtcgcttttgcagtaggattaggtcttgccggtgcaggcttgctcctcggatggactatggggtggttgtttccaactgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.42

Weight (kDa)

9.92

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	369
AciI	CCGC	2 cut(s)	349, 369
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	8 cut(s)	104, 109, 119, 143, 152, 161, 226, 283
AluI	AGCT	8 cut(s)	104, 109, 119, 143, 152, 161, 226, 283
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	78, 206
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	171, 326, 377
ApeKI	GCWGC	5 cut(s)	109, 161, 256, 280, 372
AspS9I	GGNCC	2 cut(s)	309, 327
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	96, 148, 243, 292, 384
BccI	CCATC	2 cut(s)	290, 450
BclI	TGATCA	2 cut(s)	18, 55
BcoDI	GTCTC	2 cut(s)	78, 206
BfaI	CTAG	2 cut(s)	6, 144
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	6 cut(s)	110, 162, 257, 281, 370, 373
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	6 cut(s)	111, 163, 258, 282, 371, 374
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	309, 327
BmiI	GGNNCC	2 cut(s)	248, 311
BmsI	GCATC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	305, 380, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	305, 380, 451
BseGI	GGATG	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	119, 144
BseRI	GAGGAG	2 cut(s)	379, 440
BseXI	GCAGC	5 cut(s)	96, 148, 243, 292, 384
BsgI	GTGCAG	2 cut(s)	147, 459
BshFI	GGCC	3 cut(s)	173, 328, 379
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	78, 206
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	173, 328, 379
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	18, 55, 390
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	2 cut(s)	349, 369
BspANI	GGCC	3 cut(s)	173, 328, 379
BspCNI	CTCAG	2 cut(s)	118, 145
BspLI	GGNNCC	2 cut(s)	248, 311
BspMAI	CTGCAG	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	3 cut(s)	305, 380, 451
BssMI	GATC	3 cut(s)	18, 55, 390
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	305, 380
Bst2BI	CACGAG	1 cut(s)	138
BstC8I	GCNNGC	6 cut(s)	171, 278, 326, 377, 442, 446
BstDEI	CTNAG	2 cut(s)	105, 153
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	461
BstKTI	GATC	3 cut(s)	21, 58, 393
BstMAI	GTCTC	2 cut(s)	78, 206
BstMBI	GATC	3 cut(s)	18, 55, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 158, 170, 253
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	96, 148, 243, 292, 384
BsuRI	GGCC	3 cut(s)	173, 328, 379
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	461
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	6 cut(s)	171, 278, 326, 377, 442, 446
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	309, 327
CviAII	CATG	2 cut(s)	306, 331
DdeI	CTNAG	2 cut(s)	105, 153
DpnI	GATC	3 cut(s)	20, 57, 392
DpnII	GATC	3 cut(s)	18, 55, 390
Eco130I	CCWWGG	2 cut(s)	305, 380
Eco147I	AGGCCT	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	305, 380
ErhI	CCWWGG	2 cut(s)	305, 380
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	2 cut(s)	309, 334
FaiI	YATR	9 cut(s)	28, 30, 60, 177, 307, 316, 332, 387, 464
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	2 cut(s)	305, 330
FbaI	TGATCA	2 cut(s)	18, 55
Fnu4HI	GCNGC	6 cut(s)	110, 162, 257, 281, 370, 373
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	6 cut(s)	110, 162, 257, 281, 370, 373
FspBI	CTAG	2 cut(s)	6, 144
GluI	GCNGC	6 cut(s)	110, 162, 257, 281, 370, 373
HaeIII	GGCC	3 cut(s)	173, 328, 379
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	2 cut(s)	309, 334
HindIII	AAGCTT	1 cut(s)	117
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	178, 334
HpyCH4V	TGCA	6 cut(s)	65, 164, 259, 280, 416, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 158, 170, 253
HpyF3I	CTNAG	2 cut(s)	105, 153
Hsp92II	CATG	2 cut(s)	309, 334
Ksp22I	TGATCA	2 cut(s)	18, 55
Kzo9I	GATC	3 cut(s)	18, 55, 390
LmnI	GCTCC	4 cut(s)	187, 252, 366, 453
Lsp1109I	GCAGC	5 cut(s)	96, 148, 243, 292, 384
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	6, 144
MalI	GATC	3 cut(s)	20, 57, 392
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	3 cut(s)	18, 55, 390
MboII	GAAGA	2 cut(s)	346, 349
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	2 cut(s)	357, 461
MseI	TTAA	2 cut(s)	285, 487
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	109, 226
MspI	CCGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	149, 158, 170, 253
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	18, 55, 390
NlaIII	CATG	2 cut(s)	309, 334
NlaIV	GGNNCC	2 cut(s)	248, 311
PceI	AGGCCT	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	111, 163, 258, 282, 371, 374
PspN4I	GGNNCC	2 cut(s)	248, 311
PspPI	GGNCC	2 cut(s)	309, 327
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	109, 226
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	285, 487
SatI	GCNGC	6 cut(s)	110, 162, 257, 281, 370, 373
Sau3AI	GATC	3 cut(s)	18, 55, 390
Sau96I	GGNCC	2 cut(s)	309, 327
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	173
SsiI	CCGC	2 cut(s)	349, 369
SspMI	CTAG	2 cut(s)	6, 144
StuI	AGGCCT	1 cut(s)	173
StyI	CCWWGG	2 cut(s)	305, 380
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	23
TauI	GCSGC	1 cut(s)	372
Tru1I	TTAA	2 cut(s)	285, 487
Tru9I	TTAA	2 cut(s)	285, 487
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	5 cut(s)	109, 161, 256, 280, 372
TspDTI	ATGAA	3 cut(s)	25, 105, 347
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	309
XspI	CTAG	2 cut(s)	6, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.