Rw1G039470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002482
Physical Location & Seq
Reverse (-)
67048820 .. 67051507
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039470.1

Sequence Viewer

Length: 1407 bp
ATGCAAAATCCAGAAGACAGAACCCATCCTTTTTTTTTAAAGATAAGGGTAATGGCAGCAGCCGAAGCACGGACTGGATGGCAGCATAGAGCGAATTGTTGTTTTGCCCAAGACAATGTGAGGAGTGCTCAAAGATTTGCGCGTCACCCGTCATCGTCTTCCTCAACAGAATCTGATAGTGCTCCTGAGAATTCTTCGTATGGGATTGATCACCTTATCCCAGATTGCATGCCTTATAACTCAAATCTGGAGCTAACACCCAGCACTAGGTGGTGGTTGAACCTGGAACCTAACTTTGGGCCTCAGAAGGAATTTATCTATGATCAGCAAAAGAGCCTGGACGCTGAACTTGAAGTTTTGAATTCTGGATATATTAATAAAACTGCCATCATAAGTGATTATTATCAGTGCAAGGAGGTATTTAGTACTCAGAGTGATAGTGAGAAGGGTGTCAACAGTTTTGTGGAGAAACCATGCAAGGTTTCAGTCACTTCTCCGAGAAATGACCCGAGTAAGAGAATGCAAGAACTCAAGGCTGGAATTGGTGATGGTCTGCAGCTGCCTAAGAAAAGGGACACAGGGGAGTTTTGGTACTCCGATGATGATTTCATGAACTTGGATTCTTTCAGTAGCTTGGATTCTGAACAAAACAAAAAGCTGTCTCCCGATTTGGATTCCCAATGGGTGGGAAGTGAGAAGTCTGAACCCTGGTGGCGCTCTGCTGGTAAAGATGAGTTGGCTTCCTTGGTTGCTCAGAAATCACTTGAAAATGTTGAGAATTGTGATCTTCCACGGCCCCAGATTAAGCATAGTAGGATGGGTCCTATCGCTTCTACAAAGTTTCCTGACCCTAATTTGTCCTTAGATCAGATGACTGAACTGGGATTGTCCAATGTCACCACTTATACTCAGGGAAGCTTTACTTCAGGTCACTCAATATATGATTCAGACAGTCCACTAAGCCACAACAATGATCATGCTGCAACCAACCAAGATGAGCGAGATGATGAACGAAGTAAAGCTCAGCTGCTGGAAGCTTTGTGTCATTCTCAAACACGAGCTAGGAAAGCTGAGAAAGCTGCACAGCAGGCCTATACAGAGAAGGAGCACATCATCAGTCTCTTTTTCAAACAGGCATCACAGCTGTTTGCCTACAAGCAGTGGCTCCATTTGCTGCAAATCGAGAACTTTTGCCTGCAGCTTAATAAAAAAGATGGCTTACCATGGTCCCCATACAAAGGCAGGCCCATGAAGAAGAAGGCTCACCGCAGGGCTGGAAAGAGGAGCGGCAGCAGGCCAAGGTATGAGATCAGCAAGGGTGCTGTTGCTTTTGCAGTAGGATTAGGTCTTGCCGGTGCAGGCTTGCTCCTCGGATGGACTATGGGGTGGTTGTTCCCAACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

468

Amino Acids

52.78

Weight (kDa)

6.65

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 685
AccBSI CCGCTC 1 cut(s) 1287
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 1267, 1287
AcsI RAATTY 3 cut(s) 190, 311, 361
AcuI CTGAAG 1 cut(s) 909
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 2 cut(s) 427, 593
AfiI CCNNNNNNNGG 5 cut(s) 69, 267, 296, 685, 1238
AgsI TTSAA 5 cut(s) 280, 353, 361, 767, 1129
AjnI CCWGG 3 cut(s) 282, 336, 707
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
Alw21I GWGCWC 3 cut(s) 130, 184, 1110
Alw26I GTCTC 2 cut(s) 666, 1124
AlwNI CAGNNNCTG 2 cut(s) 173, 1030
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 5 cut(s) 299, 794, 1089, 1244, 1295
ApoI RAATTY 3 cut(s) 190, 311, 361
AseI ATTAAT 1 cut(s) 375
AspLEI GCGC 2 cut(s) 142, 717
AspS9I GGNCC 5 cut(s) 299, 795, 821, 1227, 1245
AsuHPI GGTGA 5 cut(s) 137, 203, 557, 889, 1256
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 2 cut(s) 821, 1227
BauI CACGAG 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 21, 150
Bbv12I GWGCWC 3 cut(s) 130, 184, 1110
BccI CCATC 7 cut(s) 33, 72, 395, 542, 811, 1208, 1368
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 3 cut(s) 284, 338, 709
BclI TGATCA 3 cut(s) 208, 322, 973
BcoDI GTCTC 2 cut(s) 666, 1124
BfaI CTAG 2 cut(s) 267, 1062
BfmI CTRYAG 2 cut(s) 554, 1196
BfoI RGCGCY 1 cut(s) 718
BlpI GCTNAGC 1 cut(s) 1023
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 3 cut(s) 284, 338, 709
Bme18I GGWCC 2 cut(s) 821, 1227
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 5 cut(s) 299, 795, 821, 1227, 1245
BmiI GGNNCC 5 cut(s) 288, 797, 822, 1166, 1229
BmrFI CCNGG 3 cut(s) 284, 338, 709
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 1 cut(s) 1145
BmuI ACTGGG 1 cut(s) 890
BpiI GAAGAC 2 cut(s) 21, 150
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 6 cut(s) 707, 744, 791, 1223, 1298, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 267, 296, 685, 1238
Bse118I RCCGGY 1 cut(s) 1352
Bse1I ACTGG 2 cut(s) 79, 885
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 3 cut(s) 284, 338, 709
BseDI CCNNGG 6 cut(s) 707, 744, 791, 1223, 1298, 1369
BseGI GGATG 4 cut(s) 25, 83, 822, 1379
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 5 cut(s) 69, 267, 296, 685, 1238
BseMII CTCAG 7 cut(s) 177, 317, 443, 767, 923, 1037, 1062
BseNI ACTGG 2 cut(s) 79, 885
BseRI GAGGAG 3 cut(s) 136, 1297, 1358
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 2 cut(s) 1065, 1377
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 5 cut(s) 301, 796, 1091, 1246, 1297
BsiHKAI GWGCWC 3 cut(s) 130, 184, 1110
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 1 cut(s) 1353
BslFI GGGAC 2 cut(s) 587, 1213
BslI CCNNNNNNNGG 5 cut(s) 69, 267, 296, 685, 1238
BsmAI GTCTC 2 cut(s) 666, 1124
BsmFI GGGAC 2 cut(s) 587, 1213
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 5 cut(s) 301, 796, 1091, 1246, 1297
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 130, 184, 1110
Bsp143I GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
Bsp1720I GCTNAGC 1 cut(s) 1023
Bsp19I CCATGG 1 cut(s) 1223
BspACI CCGC 2 cut(s) 1267, 1287
BspANI GGCC 5 cut(s) 301, 796, 1091, 1246, 1297
BspCNI CTCAG 7 cut(s) 178, 316, 442, 766, 922, 1036, 1063
BspFNI CGCG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 5 cut(s) 288, 797, 822, 1166, 1229
BspMAI CTGCAG 2 cut(s) 558, 1200
BsrBI CCGCTC 1 cut(s) 1287
BsrFI RCCGGY 1 cut(s) 1352
BsrI ACTGG 2 cut(s) 79, 885
BssAI RCCGGY 1 cut(s) 1352
BssECI CCNNGG 6 cut(s) 707, 744, 791, 1223, 1298, 1369
BssMI GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
BssSI CACGAG 1 cut(s) 1056
BssT1I CCWWGG 3 cut(s) 744, 1223, 1298
Bst2BI CACGAG 1 cut(s) 1056
Bst2UI CCWGG 3 cut(s) 284, 338, 709
Bst4CI ACNGT 2 cut(s) 458, 953
BstC8I GCNNGC 7 cut(s) 230, 1089, 1196, 1244, 1295, 1360, 1364
BstDSI CCRYGG 2 cut(s) 791, 1223
BstF5I GGATG 4 cut(s) 25, 83, 822, 1379
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 718
BstHHI GCGC 2 cut(s) 142, 717
BstKTI GATC 6 cut(s) 211, 325, 787, 868, 976, 1311
BstMAI GTCTC 2 cut(s) 666, 1124
BstMBI GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
BstMWI GCNNNNNNNGC 5 cut(s) 65, 1067, 1076, 1088, 1171
BstNI CCWGG 3 cut(s) 284, 338, 709
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 282, 336, 707
BstSFI CTRYAG 2 cut(s) 554, 1196
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 21, 150
BsuRI GGCC 5 cut(s) 301, 796, 1091, 1246, 1297
BtgI CCRYGG 2 cut(s) 791, 1223
BtsCI GGATG 4 cut(s) 25, 83, 822, 1379
BtsI GCAGTG 1 cut(s) 1166
BtsIMutI CAGTG 2 cut(s) 413, 1166
Cac8I GCNNGC 7 cut(s) 230, 1089, 1196, 1244, 1295, 1360, 1364
CaiI CAGNNNCTG 2 cut(s) 173, 1030
CciI TCATGA 1 cut(s) 609
CfoI GCGC 2 cut(s) 142, 717
Cfr10I RCCGGY 1 cut(s) 1352
Cfr13I GGNCC 5 cut(s) 299, 795, 821, 1227, 1245
CseI GACGC 2 cut(s) 131, 350
Csp6I GTAC 2 cut(s) 426, 592
CviAII CATG 6 cut(s) 229, 474, 610, 977, 1224, 1249
CviQI GTAC 2 cut(s) 426, 592
DpnI GATC 6 cut(s) 210, 324, 786, 867, 975, 1310
DpnII GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
DraI TTTAAA 1 cut(s) 39
DraIII CACNNNGTG 1 cut(s) 270
Eco130I CCWWGG 3 cut(s) 744, 1223, 1298
Eco147I AGGCCT 1 cut(s) 1091
Eco47I GGWCC 2 cut(s) 821, 1227
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 821
EcoRI GAATTC 2 cut(s) 190, 361
EcoRII CCWGG 3 cut(s) 282, 336, 707
EcoT14I CCWWGG 3 cut(s) 744, 1223, 1298
ErhI CCWWGG 3 cut(s) 744, 1223, 1298
FaeI CATG 6 cut(s) 232, 477, 613, 980, 1227, 1252
FalI AAGNNNNNCTT 2 cut(s) 907, 939
FaqI GGGAC 2 cut(s) 587, 1213
FatI CATG 6 cut(s) 228, 473, 609, 976, 1223, 1248
FbaI TGATCA 3 cut(s) 208, 322, 973
FokI GGATG 4 cut(s) 12, 90, 829, 1386
FspBI CTAG 2 cut(s) 267, 1062
GlaI GCGC 2 cut(s) 141, 716
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 718
HaeIII GGCC 5 cut(s) 301, 796, 1091, 1246, 1297
HapII CCGG 1 cut(s) 1353
HgaI GACGC 2 cut(s) 131, 350
HhaI GCGC 2 cut(s) 142, 717
Hin1II CATG 6 cut(s) 232, 477, 613, 980, 1227, 1252
Hin6I GCGC 2 cut(s) 140, 715
HinP1I GCGC 2 cut(s) 140, 715
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 2 cut(s) 916, 1035
HinfI GANTC 5 cut(s) 170, 620, 638, 674, 944
HpaII CCGG 1 cut(s) 1353
HphI GGTGA 5 cut(s) 137, 203, 557, 889, 1256
Hpy166II GTNNAC 2 cut(s) 454, 956
Hpy188III TCNNGA 8 cut(s) 11, 185, 248, 366, 610, 665, 845, 1183
Hpy8I GTNNAC 2 cut(s) 454, 956
HpyAV CCTTC 4 cut(s) 301, 439, 1096, 1252
HpyCH4III ACNGT 2 cut(s) 458, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 1067, 1076, 1088, 1171
Hsp92II CATG 6 cut(s) 232, 477, 613, 980, 1227, 1252
HspAI GCGC 2 cut(s) 140, 715
Ksp22I TGATCA 3 cut(s) 208, 322, 973
Kzo9I GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
LmnI GCTCC 6 cut(s) 187, 250, 1105, 1170, 1284, 1371
LweI GCATC 1 cut(s) 1145
MaeI CTAG 2 cut(s) 267, 1062
MaeIII GTNAC 4 cut(s) 143, 487, 895, 929
MalI GATC 6 cut(s) 210, 324, 786, 867, 975, 1310
MbiI CCGCTC 1 cut(s) 1287
MboI GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
MboII GAAGA 6 cut(s) 26, 150, 186, 779, 1264, 1267
MhlI GDGCHC 3 cut(s) 130, 184, 1110
MluCI AATT 7 cut(s) 94, 190, 311, 361, 540, 778, 853
MnlI CCTC 6 cut(s) 114, 172, 312, 409, 1275, 1379
MseI TTAA 5 cut(s) 38, 375, 804, 1203, 1405
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 3 cut(s) 559, 1027, 1144
MspI CCGG 1 cut(s) 1353
MspR9I CCNGG 3 cut(s) 284, 338, 709
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 3 cut(s) 284, 338, 709
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 5 cut(s) 65, 1067, 1076, 1088, 1171
NcoI CCATGG 1 cut(s) 1223
NdeII GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
NlaIII CATG 6 cut(s) 232, 477, 613, 980, 1227, 1252
NlaIV GGNNCC 5 cut(s) 288, 797, 822, 1166, 1229
NmuCI GTSAC 4 cut(s) 143, 487, 895, 929
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PagI TCATGA 1 cut(s) 609
PceI AGGCCT 1 cut(s) 1091
PctI GAATGC 1 cut(s) 525
PfeI GAWTC 5 cut(s) 170, 620, 638, 674, 944
PflMI CCANNNNNTGG 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 821
PshBI ATTAAT 1 cut(s) 375
PsiI TTATAA 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 3 cut(s) 282, 336, 707
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 282, 336, 707
PspN4I GGNNCC 5 cut(s) 288, 797, 822, 1166, 1229
PspPI GGNCC 5 cut(s) 299, 795, 821, 1227, 1245
PspPPI RGGWCCY 1 cut(s) 821
PstI CTGCAG 2 cut(s) 558, 1200
PstNI CAGNNNCTG 2 cut(s) 173, 1030
PvuII CAGCTG 3 cut(s) 559, 1027, 1144
RsaI GTAC 2 cut(s) 427, 593
RsaNI GTAC 2 cut(s) 426, 592
RseI CAYNNNNRTG 1 cut(s) 969
SaqAI TTAA 5 cut(s) 38, 375, 804, 1203, 1405
Sau3AI GATC 6 cut(s) 208, 322, 784, 865, 973, 1308
Sau96I GGNCC 5 cut(s) 299, 795, 821, 1227, 1245
ScaI AGTACT 1 cut(s) 427
ScrFI CCNGG 3 cut(s) 284, 338, 709
SduI GDGCHC 3 cut(s) 130, 184, 1110
SfaNI GCATC 1 cut(s) 1145
SfcI CTRYAG 2 cut(s) 554, 1196
SinI GGWCC 2 cut(s) 821, 1227
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SphI GCATGC 1 cut(s) 232
Sse9I AATT 7 cut(s) 94, 190, 311, 361, 540, 778, 853
SseBI AGGCCT 1 cut(s) 1091
SsiI CCGC 2 cut(s) 1267, 1287
SspMI CTAG 2 cut(s) 267, 1062
StuI AGGCCT 1 cut(s) 1091
StyD4I CCNGG 3 cut(s) 282, 336, 707
StyI CCWWGG 3 cut(s) 744, 1223, 1298
TaaI ACNGT 2 cut(s) 458, 953
TaqI TCGA 1 cut(s) 1182
TasI AATT 7 cut(s) 94, 190, 311, 361, 540, 778, 853
TatI WGTACW 1 cut(s) 425
TauI GCSGC 1 cut(s) 1290
TfiI GAWTC 5 cut(s) 170, 620, 638, 674, 944
Tru1I TTAA 5 cut(s) 38, 375, 804, 1203, 1405
Tru9I TTAA 5 cut(s) 38, 375, 804, 1203, 1405
TscAI CASTG 2 cut(s) 413, 1166
TseFI GTSAC 4 cut(s) 143, 487, 895, 929
Tsp45I GTSAC 4 cut(s) 143, 487, 895, 929
TspDTI ATGAA 4 cut(s) 598, 626, 1023, 1265
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 413, 1166
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 821, 1227
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 3 cut(s) 190, 311, 361
XceI RCATGY 1 cut(s) 232
XspI CTAG 2 cut(s) 267, 1062
ZrmI AGTACT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.