RchiOBHm_Chr1g0360101

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
51907591 .. 51911073
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58512

Sequence Viewer

Length: 1356 bp
ATGGCGGGAGCAGAAGCAAGGGCCGTGTGGCAGAGAACAGCTAATCGTTGCTTTGTCCAAGAAGATGCAAAAAGAGCTCCCAAATTAGCTTATTGTCAATCCTCATCTTCAACAACCAAGCAGGTGGGTGCTGGGCCTGCAACTGCAACAGAAGGATTAGATCATCCTGGTGTTGGCTTCATGCCTATTAATAGGAATCGTTCATATTCCAATCTACCCCCGGACACAAGATGGTGGCTGCAAATGCAACCTAACTATGGCTACCAAAAAGATTTAACCTATGAACAGTTAAATGAGTTGGAGGCTGACATGGAAACACTGAGAGCTGGGTTTGTAGAACAAACATCCAAAAACAGTGAGTTCGACCAACATAAAGGAAAATTTACTGATATGAAGACAGGTTATGAAGTCCAAAAGAAAGATGTGGACGCTGAATATGGTGAGAACATACAGGAACTTCAGTACAAGGACATGAGGGAAACATATGAAAAAATGGGGATGGATACCATTGATTGCCCAGTTTCAGAACAGTCCAAGGAGTTGTCTTGTGAACCAGAATATCCCTGGATGGGAGGTGGGAGGACTGAACCTTGGTGGCGGACAACTGATAGAGATGAACTGGCCTCCTTGGTTGCACAAAAGTCACTTAACCATATTGAGAACTGTGATCTTCCCCCACCTCAGAAACTGTATCATAAGAGACATCCATATGCTGCTCATATTGGGTTTTCTGACCGCGATGGAATATTGGGGACATCTTTAGACAGGAAGGCTCAAGCCAGTGGTTTTTCCAGTATGACTACTCATCCACAGGGATATGCTGATACTGGGATAACACATGGAAAAAATGGAGATGCAGCTGATGAAGAGCACTCTGACACATCAATCAGGGATCTCTTAGATCTGCAACAACTTACTGAGGGTGACCCTACCAAAGCTCAGCTAATTGAAGCACTGTGCCATTCTCAAACACGTGCAAGGGAAGCTGAGAAGGCAGCAAAGCAAGCTTGTGCTGAGAAGGAGCATATTTTTAAGCTCTTCTTTAAACAAGCTTCTCAGCTCTTTGCCTATAAGCAGTGGTTCCAATTGCTGCAGCTGGAAACCCTTTATGTCCAGATTAAGAACAAGGACCAGGCAGGCTCCACTGTTCTCCCGGTGGTCCTTCCTTGGATGTCAAGCAGACGTCGAAAATCACACAAGAGCTGGCGTAAGGTTCCCAAAGGTAAACGAAGCAGGCGGGTCAACCCCGGATATGACATTTCCAAGTATGCCGTTGCACTTGCACTGGGGTTCGGTCTCGTTGGTGCTGGCGTGCTCCTGGGATGGACTGTGGTTTTTTTTTTTTTTTCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

51.06

Weight (kDa)

7.18

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
AatII GACGTC 1 cut(s) 1186
Acc36I ACCTGC 1 cut(s) 112
AccII CGCG 1 cut(s) 738
AciI CCGC 4 cut(s) 5, 598, 736, 1237
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 443
AcvI CACGTG 1 cut(s) 974
AcyI GRCGYC 1 cut(s) 1183
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 173, 257, 569
AflIII ACRYGT 1 cut(s) 971
AgsI TTSAA 2 cut(s) 111, 950
AjnI CCWGG 4 cut(s) 166, 563, 1131, 1317
Alw21I GWGCWC 3 cut(s) 79, 873, 1317
Alw26I GTCTC 2 cut(s) 694, 1301
AlwI GGATC 1 cut(s) 900
AlwNI CAGNNNCTG 1 cut(s) 688
AoxI GGCC 3 cut(s) 21, 134, 621
ApeKI GCWGC 6 cut(s) 238, 713, 857, 995, 1090, 1093
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 21, 134, 1129, 1159
AsuC2I CCSGG 3 cut(s) 221, 1154, 1248
AsuHPI GGTGA 2 cut(s) 452, 935
AvaII GGWCC 2 cut(s) 1129, 1159
BanII GRGCYC 1 cut(s) 79
BbrPI CACGTG 1 cut(s) 974
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 3 cut(s) 79, 873, 1317
BbvI GCAGC 6 cut(s) 225, 700, 869, 1007, 1077, 1105
BccI CCATC 5 cut(s) 225, 493, 562, 734, 1317
BceAI ACGGC 2 cut(s) 8, 1256
BciT130I CCWGG 4 cut(s) 168, 565, 1133, 1319
BciVI GTATCC 1 cut(s) 496
BcnI CCSGG 3 cut(s) 221, 1154, 1248
BcoDI GTCTC 2 cut(s) 694, 1301
BfmI CTRYAG 1 cut(s) 1091
BfuAI ACCTGC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 1 cut(s) 901
BisI GCNGC 6 cut(s) 239, 714, 858, 996, 1091, 1094
BlpI GCTNAGC 1 cut(s) 939
BlsI GCNGC 6 cut(s) 240, 715, 859, 997, 1092, 1095
Bme1390I CCNGG 7 cut(s) 168, 221, 565, 1133, 1154, 1248, 1319
Bme18I GGWCC 2 cut(s) 1129, 1159
BmgT120I GGNCC 4 cut(s) 21, 134, 1129, 1159
BmiI GGNNCC 3 cut(s) 1082, 1141, 1215
BmrFI CCNGG 7 cut(s) 168, 221, 565, 1133, 1154, 1248, 1319
BmrI ACTGGG 3 cut(s) 512, 837, 1295
BmsI GCATC 2 cut(s) 55, 844
BmuI ACTGGG 3 cut(s) 512, 837, 1295
BpiI GAAGAC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 759
BpuMI CCSGG 3 cut(s) 221, 1154, 1248
BsaAI YACGTR 1 cut(s) 974
BsaHI GRCGYC 1 cut(s) 1183
BsaI GGTCTC 1 cut(s) 1301
BsaJI CCNNGG 8 cut(s) 219, 534, 563, 590, 627, 1166, 1246, 1318
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 257, 569
Bse1I ACTGG 6 cut(s) 518, 624, 780, 792, 832, 1290
BseBI CCWGG 4 cut(s) 168, 565, 1133, 1319
BseDI CCNNGG 8 cut(s) 219, 534, 563, 590, 627, 1166, 1246, 1318
BseGI GGATG 8 cut(s) 163, 344, 504, 573, 703, 805, 1176, 1328
BseLI CCNNNNNNNGG 3 cut(s) 173, 257, 569
BseMII CTCAG 7 cut(s) 311, 695, 909, 953, 978, 1005, 1070
BseNI ACTGG 6 cut(s) 518, 624, 780, 792, 832, 1290
BseXI GCAGC 6 cut(s) 225, 700, 869, 1007, 1077, 1105
BseYI CCCAGC 2 cut(s) 131, 326
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 3 cut(s) 23, 136, 623
BsiHKAI GWGCWC 3 cut(s) 79, 873, 1317
BsiSI CCGG 3 cut(s) 221, 1154, 1248
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 3 cut(s) 173, 257, 569
BsmAI GTCTC 2 cut(s) 694, 1301
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 3 cut(s) 23, 136, 623
Bso31I GGTCTC 1 cut(s) 1301
Bsp1286I GDGCHC 3 cut(s) 79, 873, 1317
Bsp143I GATC 4 cut(s) 160, 667, 892, 901
Bsp1720I GCTNAGC 1 cut(s) 939
BspACI CCGC 4 cut(s) 5, 598, 736, 1237
BspANI GGCC 3 cut(s) 23, 136, 623
BspCNI CTCAG 7 cut(s) 312, 694, 910, 952, 979, 1006, 1069
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 3 cut(s) 1082, 1141, 1215
BspMAI CTGCAG 1 cut(s) 1095
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 900
BspQI GCTCTTC 2 cut(s) 861, 1043
BspTNI GGTCTC 1 cut(s) 1301
BsrI ACTGG 6 cut(s) 518, 624, 780, 792, 832, 1290
BssECI CCNNGG 8 cut(s) 219, 534, 563, 590, 627, 1166, 1246, 1318
BssMI GATC 4 cut(s) 160, 667, 892, 901
BssNI GRCGYC 1 cut(s) 1183
BssT1I CCWWGG 4 cut(s) 534, 590, 627, 1166
Bst2UI CCWGG 4 cut(s) 168, 565, 1133, 1319
Bst4CI ACNGT 8 cut(s) 288, 356, 531, 665, 690, 957, 1147, 1330
Bst6I CTCTTC 2 cut(s) 861, 1043
BstACI GRCGYC 1 cut(s) 1183
BstBAI YACGTR 1 cut(s) 974
BstC8I GCNNGC 7 cut(s) 138, 1005, 1138, 1205, 1235, 1309, 1313
BstDEI CTNAG 8 cut(s) 320, 681, 898, 918, 939, 987, 1014, 1056
BstEII GGTNACC 1 cut(s) 923
BstF5I GGATG 8 cut(s) 163, 344, 504, 573, 703, 805, 1176, 1328
BstFNI CGCG 1 cut(s) 738
BstKTI GATC 4 cut(s) 163, 670, 895, 904
BstMAI GTCTC 2 cut(s) 694, 1301
BstMBI GATC 4 cut(s) 160, 667, 892, 901
BstMWI GCNNNNNNNGC 6 cut(s) 74, 137, 244, 983, 992, 1004
BstNI CCWGG 4 cut(s) 168, 565, 1133, 1319
BstPI GGTNACC 1 cut(s) 923
BstSCI CCNGG 7 cut(s) 166, 219, 563, 1131, 1152, 1246, 1317
BstSFI CTRYAG 1 cut(s) 1091
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 6 cut(s) 225, 700, 869, 1007, 1077, 1105
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 892, 901
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 892, 901
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 3 cut(s) 23, 136, 623
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 8 cut(s) 163, 344, 504, 573, 703, 805, 1176, 1328
BtsI GCAGTG 1 cut(s) 1082
BtsIMutI CAGTG 7 cut(s) 317, 361, 787, 953, 1082, 1143, 1283
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 7 cut(s) 138, 1005, 1138, 1205, 1235, 1309, 1313
CaiI CAGNNNCTG 1 cut(s) 688
Cfr13I GGNCC 4 cut(s) 21, 134, 1129, 1159
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 463
CviAII CATG 4 cut(s) 181, 310, 472, 839
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 8 cut(s) 320, 681, 898, 918, 939, 987, 1014, 1056
DpnI GATC 4 cut(s) 162, 669, 894, 903
DpnII GATC 4 cut(s) 160, 667, 892, 901
DraI TTTAAA 1 cut(s) 1045
Eam1104I CTCTTC 2 cut(s) 861, 1043
EarI CTCTTC 2 cut(s) 861, 1043
EciI GGCGGA 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 4 cut(s) 534, 590, 627, 1166
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 1301
Eco47I GGWCC 2 cut(s) 1129, 1159
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 443
Eco72I CACGTG 1 cut(s) 974
Eco91I GGTNACC 1 cut(s) 923
EcoICRI GAGCTC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 923
EcoRII CCWGG 4 cut(s) 166, 563, 1131, 1317
EcoT14I CCWWGG 4 cut(s) 534, 590, 627, 1166
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 4 cut(s) 534, 590, 627, 1166
FaeI CATG 4 cut(s) 184, 313, 475, 842
FalI AAGNNNNNCTT 2 cut(s) 1025, 1057
FaqI GGGAC 1 cut(s) 766
FatI CATG 4 cut(s) 180, 309, 471, 838
FauI CCCGC 1 cut(s) 1230
FauNDI CATATG 2 cut(s) 484, 709
Fnu4HI GCNGC 6 cut(s) 239, 714, 858, 996, 1091, 1094
FokI GGATG 8 cut(s) 150, 331, 511, 580, 690, 792, 1183, 1335
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 239, 714, 858, 996, 1091, 1094
GluI GCNGC 6 cut(s) 239, 714, 858, 996, 1091, 1094
GsaI CCCAGC 2 cut(s) 135, 330
HaeIII GGCC 3 cut(s) 23, 136, 623
HapII CCGG 3 cut(s) 221, 1154, 1248
HgaI GACGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 1183
Hin1II CATG 4 cut(s) 184, 313, 475, 842
HincII GTYRAC 1 cut(s) 1243
HindII GTYRAC 1 cut(s) 1243
HindIII AAGCTT 2 cut(s) 1005, 1050
HinfI GANTC 1 cut(s) 196
HpaII CCGG 3 cut(s) 221, 1154, 1248
HphI GGTGA 2 cut(s) 452, 935
Hpy166II GTNNAC 4 cut(s) 427, 551, 1226, 1243
Hpy188I TCNGA 4 cut(s) 526, 684, 733, 877
Hpy188III TCNNGA 1 cut(s) 1114
Hpy8I GTNNAC 4 cut(s) 427, 551, 1226, 1243
Hpy99I CGWCG 1 cut(s) 1188
HpyAV CCTTC 5 cut(s) 146, 763, 985, 1012, 1172
HpyCH4III ACNGT 8 cut(s) 288, 356, 531, 665, 690, 957, 1147, 1330
HpyCH4IV ACGT 2 cut(s) 973, 1183
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 137, 244, 983, 992, 1004
HpyF3I CTNAG 8 cut(s) 320, 681, 898, 918, 939, 987, 1014, 1056
HpySE526I ACGT 2 cut(s) 973, 1183
Hsp92I GRCGYC 1 cut(s) 1183
Hsp92II CATG 4 cut(s) 184, 313, 475, 842
Kzo9I GATC 4 cut(s) 160, 667, 892, 901
LguI GCTCTTC 2 cut(s) 861, 1043
LmnI GCTCC 5 cut(s) 8, 82, 1021, 1145, 1320
Lsp1109I GCAGC 6 cut(s) 225, 700, 869, 1007, 1077, 1105
LweI GCATC 2 cut(s) 55, 844
MaeII ACGT 2 cut(s) 973, 1183
MaeIII GTNAC 2 cut(s) 642, 923
MalI GATC 4 cut(s) 162, 669, 894, 903
MboI GATC 4 cut(s) 160, 667, 892, 901
MboII GAAGA 6 cut(s) 74, 99, 406, 662, 878, 1030
MfeI CAATTG 1 cut(s) 1085
MflI RGATCY 2 cut(s) 892, 901
MhlI GDGCHC 3 cut(s) 79, 873, 1317
MluCI AATT 4 cut(s) 83, 380, 945, 1085
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 8 cut(s) 112, 295, 468, 566, 573, 634, 690, 913
MseI TTAA 8 cut(s) 189, 275, 290, 648, 1032, 1044, 1119, 1354
MslI CAYNNNNRTG 2 cut(s) 168, 708
MspA1I CMGCKG 2 cut(s) 860, 1096
MspI CCGG 3 cut(s) 221, 1154, 1248
MspR9I CCNGG 7 cut(s) 168, 221, 565, 1133, 1154, 1248, 1319
MunI CAATTG 1 cut(s) 1085
MvaI CCWGG 4 cut(s) 168, 565, 1133, 1319
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 6 cut(s) 74, 137, 244, 983, 992, 1004
NciI CCSGG 3 cut(s) 221, 1154, 1248
NdeI CATATG 2 cut(s) 484, 709
NdeII GATC 4 cut(s) 160, 667, 892, 901
NlaIII CATG 4 cut(s) 184, 313, 475, 842
NlaIV GGNNCC 3 cut(s) 1082, 1141, 1215
NmuCI GTSAC 2 cut(s) 642, 923
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 2 cut(s) 861, 1043
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 6 cut(s) 240, 715, 859, 997, 1092, 1095
PmaCI CACGTG 1 cut(s) 974
PmlI CACGTG 1 cut(s) 974
Ppu21I YACGTR 1 cut(s) 974
PshBI ATTAAT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 4 cut(s) 166, 563, 1131, 1317
PspCI CACGTG 1 cut(s) 974
PspEI GGTNACC 1 cut(s) 923
PspFI CCCAGC 2 cut(s) 131, 326
PspGI CCWGG 4 cut(s) 166, 563, 1131, 1317
PspN4I GGNNCC 3 cut(s) 1082, 1141, 1215
PspPI GGNCC 4 cut(s) 21, 134, 1129, 1159
PstI CTGCAG 1 cut(s) 1095
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 892, 901
PvuII CAGCTG 2 cut(s) 860, 1096
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 2 cut(s) 168, 708
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 2 cut(s) 861, 1043
SaqAI TTAA 8 cut(s) 189, 275, 290, 648, 1032, 1044, 1119, 1354
SatI GCNGC 6 cut(s) 239, 714, 858, 996, 1091, 1094
Sau3AI GATC 4 cut(s) 160, 667, 892, 901
Sau96I GGNCC 4 cut(s) 21, 134, 1129, 1159
ScrFI CCNGG 7 cut(s) 168, 221, 565, 1133, 1154, 1248, 1319
SduI GDGCHC 3 cut(s) 79, 873, 1317
SfaNI GCATC 2 cut(s) 55, 844
SfcI CTRYAG 1 cut(s) 1091
SinI GGWCC 2 cut(s) 1129, 1159
SmiMI CAYNNNNRTG 2 cut(s) 168, 708
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
Sse9I AATT 4 cut(s) 83, 380, 945, 1085
SsiI CCGC 4 cut(s) 5, 598, 736, 1237
SspI AATATT 1 cut(s) 747
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 7 cut(s) 166, 219, 563, 1131, 1152, 1246, 1317
StyI CCWWGG 4 cut(s) 534, 590, 627, 1166
TaaI ACNGT 8 cut(s) 288, 356, 531, 665, 690, 957, 1147, 1330
TaiI ACGT 2 cut(s) 976, 1186
TaqI TCGA 2 cut(s) 363, 1186
TaqII GACCGA 1 cut(s) 1283
TasI AATT 4 cut(s) 83, 380, 945, 1085
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 8 cut(s) 189, 275, 290, 648, 1032, 1044, 1119, 1354
Tru9I TTAA 8 cut(s) 189, 275, 290, 648, 1032, 1044, 1119, 1354
TscAI CASTG 7 cut(s) 324, 361, 787, 960, 1082, 1150, 1290
TseFI GTSAC 2 cut(s) 642, 923
TseI GCWGC 6 cut(s) 238, 713, 857, 995, 1090, 1093
Tsp45I GTSAC 2 cut(s) 642, 923
TspDTI ATGAA 8 cut(s) 169, 192, 297, 407, 420, 501, 630, 879
TspRI CASTG 7 cut(s) 324, 361, 787, 960, 1082, 1150, 1290
VpaK11BI GGWCC 2 cut(s) 1129, 1159
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
ZraI GACGTC 1 cut(s) 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.