MD07G1152400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
22195485 .. 22198862
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1152400.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGGCGGCAGCAGAAGCAAGGGCTGTGTGGCAGAGAACAGCTAATCGTTGTTTTGTCCAAGAGGATGCTAAAAGAGCTCCCAAGTTAGCTTGCTGCCAATCCTCGTCTTCGACAACTAGGCAGGTTGATGCTGGGCCTGCAACTGTAGCAGAAGGGCCAGATCATCCTGCCACTGGTTTCATGCCTATCAATCGGAATCCTTCATATTCTAGTCTACCCCCCGATACAAGATGGTGGCTGCAAATGCAACCTAGCTATGGGTACCAAAAGGATTTTACATACGAACAGTTAAGTGCATTGGAGGCTGACATGGAAACACTGAGAGCTGGGTTCGTGAAATCAACACCCAAAACTAGCGAGGTCCACCAGCAAAAAGCAGAATTCACTGATGCAGTCTCCGCTGTTTGTATGAAGACAGGCTACGAAGCCCAAAAGCAAGATGTAAGCGCCAAATATAGTAAGAACATGCAGGAACCTCTTCAATACGAAATGAAGGAAAAATATGAAATAATGGGGATGGATACCATTGATTGCCCAGTTTCCAATCAACCCAAGGAGTTTTGTTGTGACTATCCTTGGATTGGAGGTGGGAGGGCTGAACCATGGTGGCGGACAACTGACAGAGATGAATTGGCTTCCTTGGTTGCTCAGAAGTCGCTTAACCATATGGAGAACTGCGACCTTCCCCCACCTCAAAAAACGTATCATAAGAGACATCCATATGCTGATATTGGATGTTCTGACCCGAATGTGATATTGGGGACATCTTTAGATGCGAAGGCCCAAGCAACCAGTCTTTCCAGTATGACTACTCCTGCACATGGCTATCCTGATTCTGGAAGGGGAGAAATGTCTGGAGAAGGGCACTCCGACAAGTCATTCAGAGACATCACGGAGATACAACAACTTTCTGAGGGTGAGCCTACAAAAGCTCAGCTAATGGAAGCACTCTGCCATTCTCAAACACGAGCAAGGGAAGCCGAGAAGGCAGCAAAGCAAGCTTATGCCGAAAAGGAGCACATCTTTAAGCTCTTCTTCACACAAGCCTCTCAACTCTTTGCCTATAAGCAGTGGTTCCAATTGCTGCAACTGGAAAGTCTTTACCTCCAGATTAAAAACAACGAACAGCCTCCAAGTGCCACTGTTTTCCCGGAGGGACTTCCATGGATGCCAGCCAAAGGCAAGAAACTGCGGAGGAACTGGCGTAAGGGTGCCAAGGGTAAAAGAGGAAGGATGGCCGAACCCAGGCACGACATTGCAACGTATGCTGTTGCTTTTGCGTTGGGGTTCGGTCTCGTTGGTGCTGGCTTGTTCCTGGGATGGACTGTGGGGTGGATGTTACCCCATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

50.49

Weight (kDa)

7.56

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 261, 1211
AccI GTMKAC 1 cut(s) 214
AciI CCGC 4 cut(s) 5, 399, 610, 1192
AcoI YGGCCR 1 cut(s) 1236
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 7 cut(s) 173, 257, 581, 821, 836, 1178, 1245
AgsI TTSAA 1 cut(s) 482
AjnI CCWGG 2 cut(s) 1244, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 9 cut(s) 41, 77, 89, 255, 326, 932, 937, 1001, 1030
AluI AGCT 9 cut(s) 41, 77, 89, 255, 326, 932, 937, 1001, 1030
Alw21I GWGCWC 2 cut(s) 79, 1020
Alw26I GTCTC 4 cut(s) 400, 706, 879, 1298
AoxI GGCC 4 cut(s) 134, 155, 780, 1236
ApeKI GCWGC 5 cut(s) 8, 93, 238, 989, 1084
ApoI RAATTY 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 4 cut(s) 134, 155, 361, 781
AsuC2I CCSGG 1 cut(s) 1151
AsuHPI GGTGA 1 cut(s) 929
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 867
BanI GGYRCC 2 cut(s) 261, 1211
BanII GRGCYC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BauI CACGAG 1 cut(s) 966
BbsI GAAGAC 2 cut(s) 99, 419
Bbv12I GWGCWC 2 cut(s) 79, 1020
BbvI GCAGC 5 cut(s) 20, 80, 225, 1001, 1071
BccI CCATC 4 cut(s) 225, 511, 1228, 1314
BciT130I CCWGG 2 cut(s) 1246, 1316
BciVI GTATCC 1 cut(s) 514
BcnI CCSGG 1 cut(s) 1151
BcoDI GTCTC 4 cut(s) 400, 706, 879, 1298
BfaI CTAG 5 cut(s) 117, 210, 252, 354, 1351
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 986
BisI GCNGC 6 cut(s) 6, 9, 94, 239, 990, 1085
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 6 cut(s) 7, 10, 95, 240, 991, 1086
Bme1390I CCNGG 3 cut(s) 1151, 1246, 1316
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 4 cut(s) 134, 155, 361, 781
BmiI GGNNCC 4 cut(s) 263, 474, 1076, 1213
BmrFI CCNGG 3 cut(s) 1151, 1246, 1316
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 5 cut(s) 55, 118, 379, 763, 1158
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 2 cut(s) 99, 419
BpmI CTGGAG 2 cut(s) 876, 1091
Bpu1102I GCTNAGC 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 1298
BsaJI CCNNGG 8 cut(s) 552, 575, 602, 639, 1163, 1215, 1244, 1315
Bsc4I CCNNNNNNNGG 7 cut(s) 173, 257, 581, 821, 836, 1178, 1245
Bse1I ACTGG 6 cut(s) 178, 536, 792, 801, 1095, 1205
Bse3DI GCAATG 1 cut(s) 1254
BseBI CCWGG 2 cut(s) 1246, 1316
BseDI CCNNGG 8 cut(s) 552, 575, 602, 639, 1163, 1215, 1244, 1315
BseGI GGATG 9 cut(s) 70, 163, 522, 715, 740, 1173, 1239, 1325, 1341
BseLI CCNNNNNNNGG 7 cut(s) 173, 257, 581, 821, 836, 1178, 1245
BseMI GCAATG 1 cut(s) 1254
BseMII CTCAG 4 cut(s) 311, 662, 903, 947
BseNI ACTGG 6 cut(s) 178, 536, 792, 801, 1095, 1205
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 5 cut(s) 20, 80, 225, 1001, 1071
BseYI CCCAGC 2 cut(s) 131, 326
BsgI GTGCAG 1 cut(s) 801
BshFI GGCC 4 cut(s) 136, 157, 782, 1238
BshNI GGYRCC 2 cut(s) 261, 1211
BsiHKAI GWGCWC 2 cut(s) 79, 1020
BsiSI CCGG 1 cut(s) 1151
BslFI GGGAC 2 cut(s) 775, 1170
BslI CCNNNNNNNGG 7 cut(s) 173, 257, 581, 821, 836, 1178, 1245
BsmAI GTCTC 4 cut(s) 400, 706, 879, 1298
BsmFI GGGAC 2 cut(s) 775, 1170
BsnI GGCC 4 cut(s) 136, 157, 782, 1238
Bso31I GGTCTC 1 cut(s) 1298
Bsp1286I GDGCHC 3 cut(s) 79, 867, 1020
Bsp143I GATC 1 cut(s) 160
Bsp1720I GCTNAGC 1 cut(s) 933
Bsp19I CCATGG 2 cut(s) 602, 1163
BspACI CCGC 4 cut(s) 5, 399, 610, 1192
BspANI GGCC 4 cut(s) 136, 157, 782, 1238
BspCNI CTCAG 4 cut(s) 312, 661, 904, 946
BspLI GGNNCC 4 cut(s) 263, 474, 1076, 1213
BspMI ACCTGC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 1037
BspT107I GGYRCC 2 cut(s) 261, 1211
BspTNI GGTCTC 1 cut(s) 1298
BsrDI GCAATG 1 cut(s) 1254
BsrI ACTGG 6 cut(s) 178, 536, 792, 801, 1095, 1205
BssECI CCNNGG 8 cut(s) 552, 575, 602, 639, 1163, 1215, 1244, 1315
BssMI GATC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 966
BssT1I CCWWGG 6 cut(s) 552, 575, 602, 639, 1163, 1215
Bst2BI CACGAG 1 cut(s) 966
Bst2UI CCWGG 2 cut(s) 1246, 1316
Bst4CI ACNGT 4 cut(s) 145, 288, 1144, 1327
Bst6I CTCTTC 2 cut(s) 483, 1037
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstC8I GCNNGC 5 cut(s) 91, 138, 999, 1173, 1306
BstDEI CTNAG 4 cut(s) 320, 648, 912, 933
BstDSI CCRYGG 2 cut(s) 602, 1163
BstF5I GGATG 9 cut(s) 70, 163, 522, 715, 740, 1173, 1239, 1325, 1341
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 4 cut(s) 400, 706, 879, 1298
BstMBI GATC 1 cut(s) 160
BstNI CCWGG 2 cut(s) 1246, 1316
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 1149, 1244, 1314
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 867
BstV1I GCAGC 5 cut(s) 20, 80, 225, 1001, 1071
BstV2I GAAGAC 2 cut(s) 99, 419
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 4 cut(s) 136, 157, 782, 1238
BtgI CCRYGG 2 cut(s) 602, 1163
BtsCI GGATG 9 cut(s) 70, 163, 522, 715, 740, 1173, 1239, 1325, 1341
BtsI GCAGTG 1 cut(s) 1076
BtsIMutI CAGTG 5 cut(s) 171, 317, 384, 1076, 1140
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 5 cut(s) 91, 138, 999, 1173, 1306
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 4 cut(s) 134, 155, 361, 781
Csp6I GTAC 1 cut(s) 262
CviAII CATG 6 cut(s) 181, 310, 466, 603, 821, 1164
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 4 cut(s) 320, 648, 912, 933
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 1236
Eam1104I CTCTTC 2 cut(s) 483, 1037
EarI CTCTTC 2 cut(s) 483, 1037
EciI GGCGGA 1 cut(s) 625
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 6 cut(s) 552, 575, 602, 639, 1163, 1215
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 1298
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 1244, 1314
EcoT14I CCWWGG 6 cut(s) 552, 575, 602, 639, 1163, 1215
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 6 cut(s) 552, 575, 602, 639, 1163, 1215
FaeI CATG 6 cut(s) 184, 313, 469, 606, 824, 1167
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 2 cut(s) 775, 1170
FatI CATG 6 cut(s) 180, 309, 465, 602, 820, 1163
FauNDI CATATG 2 cut(s) 666, 721
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 6 cut(s) 6, 9, 94, 239, 990, 1085
FokI GGATG 9 cut(s) 77, 150, 529, 702, 747, 1180, 1246, 1332, 1348
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 6, 9, 94, 239, 990, 1085
FspBI CTAG 5 cut(s) 117, 210, 252, 354, 1351
GlaI GCGC 1 cut(s) 448
GluI GCNGC 6 cut(s) 6, 9, 94, 239, 990, 1085
GsaI CCCAGC 2 cut(s) 135, 330
GsuI CTGGAG 2 cut(s) 876, 1091
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 4 cut(s) 136, 157, 782, 1238
HapII CCGG 1 cut(s) 1151
HhaI GCGC 1 cut(s) 449
Hin1II CATG 6 cut(s) 184, 313, 469, 606, 824, 1167
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HindIII AAGCTT 1 cut(s) 999
HinfI GANTC 2 cut(s) 196, 833
HpaII CCGG 1 cut(s) 1151
HphI GGTGA 1 cut(s) 929
Hpy166II GTNNAC 2 cut(s) 215, 364
Hpy188I TCNGA 6 cut(s) 195, 651, 742, 871, 884, 913
Hpy188III TCNNGA 5 cut(s) 334, 830, 837, 855, 1108
Hpy8I GTNNAC 2 cut(s) 215, 364
HpyAV CCTTC 9 cut(s) 146, 210, 487, 692, 772, 834, 854, 979, 1224
HpyCH4III ACNGT 4 cut(s) 145, 288, 1144, 1327
HpyCH4IV ACGT 2 cut(s) 701, 1262
HpyCH4V TGCA 9 cut(s) 140, 241, 247, 296, 392, 469, 818, 1087, 1259
HpyF3I CTNAG 4 cut(s) 320, 648, 912, 933
HpySE526I ACGT 2 cut(s) 701, 1262
Hsp92II CATG 6 cut(s) 184, 313, 469, 606, 824, 1167
HspAI GCGC 1 cut(s) 447
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 1037
LmnI GCTCC 2 cut(s) 82, 1015
Lsp1109I GCAGC 5 cut(s) 20, 80, 225, 1001, 1071
LweI GCATC 5 cut(s) 55, 118, 379, 763, 1158
MaeI CTAG 5 cut(s) 117, 210, 252, 354, 1351
MaeII ACGT 2 cut(s) 701, 1262
MaeIII GTNAC 2 cut(s) 566, 1338
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 5 cut(s) 99, 424, 470, 1024, 1027
MfeI CAATTG 1 cut(s) 1079
MhlI GDGCHC 3 cut(s) 79, 867, 1020
MluCI AATT 3 cut(s) 380, 629, 1079
MmeI TCCRAC 1 cut(s) 894
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 4 cut(s) 290, 660, 1026, 1113
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 1 cut(s) 1151
MspR9I CCNGG 3 cut(s) 1151, 1246, 1316
MunI CAATTG 1 cut(s) 1079
MvaI CCWGG 2 cut(s) 1246, 1316
NciI CCSGG 1 cut(s) 1151
NcoI CCATGG 2 cut(s) 602, 1163
NdeI CATATG 2 cut(s) 666, 721
NdeII GATC 1 cut(s) 160
NlaIII CATG 6 cut(s) 184, 313, 469, 606, 824, 1167
NlaIV GGNNCC 4 cut(s) 263, 474, 1076, 1213
NmeAIII GCCGAG 1 cut(s) 1006
NmuCI GTSAC 1 cut(s) 566
NspI RCATGY 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 1037
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 196, 833
PfoI TCCNGGA 1 cut(s) 1149
PkrI GCNGC 6 cut(s) 7, 10, 95, 240, 991, 1086
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 1244, 1314
PspFI CCCAGC 2 cut(s) 131, 326
PspGI CCWGG 2 cut(s) 1244, 1314
PspN4I GGNNCC 4 cut(s) 263, 474, 1076, 1213
PspPI GGNCC 4 cut(s) 134, 155, 361, 781
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 720
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 1037
SaqAI TTAA 4 cut(s) 290, 660, 1026, 1113
SatI GCNGC 6 cut(s) 6, 9, 94, 239, 990, 1085
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 4 cut(s) 134, 155, 361, 781
ScrFI CCNGG 3 cut(s) 1151, 1246, 1316
SduI GDGCHC 3 cut(s) 79, 867, 1020
SfaNI GCATC 5 cut(s) 55, 118, 379, 763, 1158
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 720
Sse9I AATT 3 cut(s) 380, 629, 1079
SsiI CCGC 4 cut(s) 5, 399, 610, 1192
SspMI CTAG 5 cut(s) 117, 210, 252, 354, 1351
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 1149, 1244, 1314
StyI CCWWGG 6 cut(s) 552, 575, 602, 639, 1163, 1215
TaaI ACNGT 4 cut(s) 145, 288, 1144, 1327
TaiI ACGT 2 cut(s) 704, 1265
TaqI TCGA 1 cut(s) 110
TaqII GACCGA 1 cut(s) 1280
TasI AATT 3 cut(s) 380, 629, 1079
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 196, 833
Tru1I TTAA 4 cut(s) 290, 660, 1026, 1113
Tru9I TTAA 4 cut(s) 290, 660, 1026, 1113
TscAI CASTG 5 cut(s) 178, 324, 391, 1076, 1147
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 5 cut(s) 8, 93, 238, 989, 1084
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 6 cut(s) 169, 192, 425, 506, 519, 642
TspGWI ACGGA 1 cut(s) 908
TspRI CASTG 5 cut(s) 178, 324, 391, 1076, 1147
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 5 cut(s) 117, 210, 252, 354, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.