Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8290353.1

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 801

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8290353.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

tataactcaaatccggagctaacacccagcactaggtggtggttgaacctggaacctaactttgggcctcagaaggaatttatctatgatcagcaaaagagcctggacgctgaacttgaagttttgaattctggatatattaataaaactgccatcataagtgattattatcagtgcaaggaggtatttagtactcagagtgatagtgagaagggtgtcaacagttttgtggagaaaccatgcaaggtttcagtcacttctccgagaaatgacccgagtaagagaatgcaagaactcaaggctggaattggtgatggtctgcagctgcctaagaaaagggacacaggggagttttggtactccgatgatgatttcatgaacttggattctttcagtagcttggattctgaacaaaacaaaaagctgtctcccgatttggattcccaatgggtgggaagtgagaagtctgaaccctggtggcgctctgctggtaaagatgagttggcttccttggttgctcagaaatcacttgaaaatgttgagaattgtgatcttccacggccccagattaagcatagtaggatgggtcctatcgcttctacaaagtttcctgaccctaatttgtccttagatcagatgactgaactgggattgtccaatgtcaccacttatactcagggaagctttacttcaggtcactcaatatatgattcagacagtccactaaggtatttttttatcttgagctgttctgtatattctttcttggatagccatcgcttatgtagattgtccttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.24

Weight (kDa)

4.89

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	77, 127
AcuI	CTGAAG	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	193, 359
AfiI	CCNNNNNNNGG	3 cut(s)	33, 62, 451
AgsI	TTSAA	4 cut(s)	46, 119, 127, 533
AjnI	CCWGG	3 cut(s)	48, 102, 473
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	6 cut(s)	19, 325, 399, 424, 684, 747
AluI	AGCT	6 cut(s)	19, 325, 399, 424, 684, 747
Alw26I	GTCTC	1 cut(s)	432
Ama87I	CYCGRG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	2 cut(s)	65, 560
ApeKI	GCWGC	2 cut(s)	322, 325
ApoI	RAATTY	2 cut(s)	77, 127
AseI	ATTAAT	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	3 cut(s)	65, 561, 587
AsuHPI	GGTGA	2 cut(s)	323, 655
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	312, 334
BccI	CCATC	4 cut(s)	161, 308, 577, 783
BceAI	ACGGC	1 cut(s)	575
BciT130I	CCWGG	3 cut(s)	50, 104, 475
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	484
BisI	GCNGC	2 cut(s)	323, 326
BlsI	GCNGC	2 cut(s)	324, 327
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	50, 104, 475
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	65, 561, 587
BmiI	GGNNCC	3 cut(s)	54, 563, 588
BmrFI	CCNGG	3 cut(s)	50, 104, 475
BmrI	ACTGGG	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	281, 763
BsaBI	GATNNNNATC	2 cut(s)	168, 774
BsaJI	CCNNGG	3 cut(s)	473, 510, 557
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 62, 451
Bse1I	ACTGG	1 cut(s)	651
Bse8I	GATNNNNATC	2 cut(s)	168, 774
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	3 cut(s)	50, 104, 475
BseDI	CCNNGG	3 cut(s)	473, 510, 557
BseGI	GGATG	1 cut(s)	588
BseJI	GATNNNNATC	2 cut(s)	168, 774
BseLI	CCNNNNNNNGG	3 cut(s)	33, 62, 451
BseMII	CTCAG	4 cut(s)	83, 209, 533, 689
BseNI	ACTGG	1 cut(s)	651
BseXI	GCAGC	2 cut(s)	312, 334
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	67, 562
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	3 cut(s)	33, 62, 451
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	67, 562
BsoBI	CYCGRG	1 cut(s)	274
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	88, 550, 631
BspANI	GGCC	2 cut(s)	67, 562
BspCNI	CTCAG	4 cut(s)	82, 208, 532, 688
BspEI	TCCGGA	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	54, 563, 588
BspMAI	CTGCAG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	3 cut(s)	473, 510, 557
BssMI	GATC	3 cut(s)	88, 550, 631
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	50, 104, 475
Bst4CI	ACNGT	2 cut(s)	224, 719
BstDEI	CTNAG	7 cut(s)	69, 195, 330, 519, 628, 675, 725
BstDSI	CCRYGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	588
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	3 cut(s)	91, 553, 634
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	3 cut(s)	88, 550, 631
BstNI	CCWGG	3 cut(s)	50, 104, 475
BstSCI	CCNGG	3 cut(s)	48, 102, 473
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	312, 334
BsuRI	GGCC	2 cut(s)	67, 562
BtgI	CCRYGG	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	761
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	3 cut(s)	65, 561, 587
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	192, 358
CviAII	CATG	2 cut(s)	240, 376
CviQI	GTAC	2 cut(s)	192, 358
DdeI	CTNAG	7 cut(s)	69, 195, 330, 519, 628, 675, 725
DpnI	GATC	3 cut(s)	90, 552, 633
DpnII	GATC	3 cut(s)	88, 550, 631
DraIII	CACNNNGTG	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	3 cut(s)	48, 102, 473
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	2 cut(s)	243, 379
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	239, 375
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	323, 326
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	323, 326
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	323, 326
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	67, 562
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	243, 379
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	4 cut(s)	386, 404, 440, 710
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	2 cut(s)	323, 655
Hpy166II	GTNNAC	2 cut(s)	220, 722
Hpy188I	TCNGA	9 cut(s)	72, 198, 264, 364, 409, 469, 522, 636, 715
Hpy188III	TCNNGA	6 cut(s)	14, 132, 376, 431, 611, 742
Hpy8I	GTNNAC	2 cut(s)	220, 722
HpyAV	CCTTC	2 cut(s)	67, 205
HpyCH4III	ACNGT	2 cut(s)	224, 719
HpyCH4V	TGCA	4 cut(s)	177, 243, 289, 322
HpyF3I	CTNAG	7 cut(s)	69, 195, 330, 519, 628, 675, 725
Hsp92II	CATG	2 cut(s)	243, 379
HspAI	GCGC	1 cut(s)	481
Kpn2I	TCCGGA	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	88, 550, 631
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	312, 334
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	253, 661, 695
MalI	GATC	3 cut(s)	90, 552, 633
MboI	GATC	3 cut(s)	88, 550, 631
MboII	GAAGA	1 cut(s)	545
MluCI	AATT	5 cut(s)	77, 127, 306, 544, 619
MnlI	CCTC	2 cut(s)	78, 175
MroI	TCCGGA	1 cut(s)	13
MseI	TTAA	2 cut(s)	141, 570
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	50, 104, 475
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	3 cut(s)	50, 104, 475
NdeII	GATC	3 cut(s)	88, 550, 631
NlaIII	CATG	2 cut(s)	243, 379
NlaIV	GGNNCC	3 cut(s)	54, 563, 588
NmuCI	GTSAC	3 cut(s)	253, 661, 695
PagI	TCATGA	1 cut(s)	375
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	386, 404, 440, 710
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	2 cut(s)	324, 327
PpuMI	RGGWCCY	1 cut(s)	587
PshBI	ATTAAT	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	3 cut(s)	48, 102, 473
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	3 cut(s)	48, 102, 473
PspN4I	GGNNCC	3 cut(s)	54, 563, 588
PspPI	GGNCC	3 cut(s)	65, 561, 587
PspPPI	RGGWCCY	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	193, 359
RsaNI	GTAC	2 cut(s)	192, 358
SaqAI	TTAA	2 cut(s)	141, 570
SatI	GCNGC	2 cut(s)	323, 326
Sau3AI	GATC	3 cut(s)	88, 550, 631
Sau96I	GGNCC	3 cut(s)	65, 561, 587
ScaI	AGTACT	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	50, 104, 475
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	2 cut(s)	296, 742
SmoI	CTYRAG	2 cut(s)	296, 742
Sse9I	AATT	5 cut(s)	77, 127, 306, 544, 619
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	48, 102, 473
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	224, 719
TasI	AATT	5 cut(s)	77, 127, 306, 544, 619
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	386, 404, 440, 710
Tru1I	TTAA	2 cut(s)	141, 570
Tru9I	TTAA	2 cut(s)	141, 570
TscAI	CASTG	1 cut(s)	179
TseFI	GTSAC	3 cut(s)	253, 661, 695
TseI	GCWGC	2 cut(s)	322, 325
Tsp45I	GTSAC	3 cut(s)	253, 661, 695
TspDTI	ATGAA	2 cut(s)	364, 392
TspRI	CASTG	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	2 cut(s)	77, 127
XspI	CTAG	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.