MD01G1083700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
19003556 .. 19006841
3286 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1083700.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGGCAGCAGCAGAAGCAAGGGCTGTGTGGCAGAGAGCAGCTAATCGTTGTTTCGTCCAAGAGGATGCCAAAAGAGCTCCCAAGTTAGCGTGCTGCCAATCCTCTTCTTCCACAACTAGGCAGGTTGATGCTGGGCCTGCAATTGGAGCAGAAGGGCCAGATCATCCTGCCGCCGGTTTCATGCCTGTCAACCGGAATCCATATTCTAGTCGACCCCCCGGTACAAGATGGTGGCTGCAACCTAGCCATGGGCACCAAAAGGATTTTACATACGAACAGTTAAATGCTTTGGAGGCTGACATGGAAACACTGAGAGCTGGGTTCGTGAAATCAACACCCAACACTAGCGAGGTCCACCAGCAAAAAGCAGAATTCACTGATGCGGATAGTATCTCCGCTGTTTGTACGAAGACAGGCTACGAAGTGCAAAAGCAAGATGTTAGCACCAAATATTGTGAAAACATGCAGGAACTTCTCCAATACGAAATGAAGGGAAAATGTGAAATAATGGGGATGGATACCATTGATTGCCCAGTTTCCAAGAAACCCAAGGAGTTTTGTTGTGATTATCCTTGGCTTGGAGGTGGGAGAGCTGAACCATGGTGGCGGACAACGGACAGAGATGAATTGGCTTCCTTGGTTGCTCAGAAGTCGCTTAACCATATTGAGAACTGCGACCTTCCCCCACCTCAGAAAATGTATCATAAGAGACATCCATATGCTGATATTGGTTGTTCTGACCCGAATGTGATATTGGGGACATCTTTAGATGCGAAGGCCCAAGCGAACTATCTTTCCAATATGACCACTCCTGCACATCGCTATCGTGAATCTGGAAAGGGAGAAGCATCCGGAGAAGGGCACTCCGACAAGTCATTCAGAGACGTCATGGAGATTCAACAACCTTCTGAGGGTGAGCCTACAAAAGCTCAGCTAATGGAGGCACTCTGCCATTCTCAAACACGTGCAAGGGAAGCTGAGATGGCGGCGAAGCAAGCTTATGCCGAGAAGGAGCACATCTTTAAGCTCTTCTTCAGACAAGCCTCTGAACTCTTTGCCTATAAGCAGTGGTTCCGATTGCTGCAGCTGGAAAGCCTTTATCTCCAGATCAAAAACAATGACCAGCGTCCAAGCGCCACTGTTTTACCGGAGGGACTTCCATGGATGCCATCCAAAGGCAAGAAACTGCGGAGGAGCCGGCGTAAGGGTGCCAAGGGTAAAGGAGGAAGGAGGGCCGAACCCAGACACGACATTACAACGTATGCTGTTGCTTTTGCATTGGGGTTCGGTCTTGTTGGTGCTGGGTTGCTGCTGGGATGGACTGTGGGGTGGATGTTACCCCATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

450

Amino Acids

50.34

Weight (kDa)

8.59

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 888
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 2 cut(s) 252, 1208
AccI GTMKAC 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 851
AciI CCGC 6 cut(s) 171, 383, 396, 607, 986, 1189
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 1018
AcvI CACGTG 1 cut(s) 965
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 2 cut(s) 223, 406
AfiI CCNNNNNNNGG 9 cut(s) 117, 143, 173, 248, 578, 858, 911, 1175, 1204
AflIII ACRYGT 1 cut(s) 962
AgsI TTSAA 1 cut(s) 899
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AloI GAACNNNNNNTCC 2 cut(s) 779, 811
Alw21I GWGCWC 2 cut(s) 79, 1017
Alw26I GTCTC 2 cut(s) 703, 876
Aor13HI TCCGGA 1 cut(s) 851
AoxI GGCC 4 cut(s) 134, 155, 777, 1233
ApeKI GCWGC 8 cut(s) 5, 8, 38, 93, 235, 1081, 1084, 1309
ApoI RAATTY 1 cut(s) 371
AspLEI GCGC 1 cut(s) 1136
AspS9I GGNCC 5 cut(s) 134, 155, 352, 778, 1233
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 926
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 2 cut(s) 255, 864
BanI GGYRCC 2 cut(s) 252, 1208
BanII GRGCYC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbrPI CACGTG 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 79, 1017
BbvI GCAGC 8 cut(s) 17, 20, 50, 80, 222, 1068, 1096, 1296
BccI CCATC 5 cut(s) 222, 508, 976, 1177, 1311
BciVI GTATCC 1 cut(s) 511
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 703, 876
BfaI CTAG 5 cut(s) 117, 207, 243, 345, 1348
BfmI CTRYAG 1 cut(s) 1082
BfoI RGCGCY 1 cut(s) 1137
BfuAI ACCTGC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 511
BlpI GCTNAGC 1 cut(s) 930
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 5 cut(s) 134, 155, 352, 778, 1233
BmiI GGNNCC 4 cut(s) 254, 1073, 1196, 1210
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 6 cut(s) 55, 118, 370, 760, 857, 1155
BmuI ACTGGG 1 cut(s) 527
BoxI GACNNNNGTC 1 cut(s) 1125
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 1088
Bpu1102I GCTNAGC 1 cut(s) 930
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 965
BsaHI GRCGYC 1 cut(s) 885
BsaJI CCNNGG 8 cut(s) 217, 247, 549, 572, 599, 636, 1160, 1212
BsaWI WCCGGW 3 cut(s) 192, 851, 1147
BsaXI ACNNNNNCTCC 2 cut(s) 1186, 1216
Bsc4I CCNNNNNNNGG 9 cut(s) 117, 143, 173, 248, 578, 858, 911, 1175, 1204
Bse118I RCCGGY 2 cut(s) 173, 1197
Bse1I ACTGG 1 cut(s) 533
BseAI TCCGGA 1 cut(s) 851
BseDI CCNNGG 8 cut(s) 217, 247, 549, 572, 599, 636, 1160, 1212
BseGI GGATG 9 cut(s) 70, 163, 519, 712, 848, 1169, 1170, 1322, 1338
BseLI CCNNNNNNNGG 9 cut(s) 117, 143, 173, 248, 578, 858, 911, 1175, 1204
BseMII CTCAG 6 cut(s) 302, 659, 704, 900, 944, 969
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 1207
BseSI GKGCMC 2 cut(s) 255, 864
BseXI GCAGC 8 cut(s) 17, 20, 50, 80, 222, 1068, 1096, 1296
BseYI CCCAGC 4 cut(s) 131, 317, 1301, 1312
BsgI GTGCAG 1 cut(s) 798
BshFI GGCC 4 cut(s) 136, 157, 779, 1235
BshNI GGYRCC 2 cut(s) 252, 1208
BsiHKAI GWGCWC 2 cut(s) 79, 1017
BsiSI CCGG 6 cut(s) 174, 193, 219, 852, 1148, 1198
BslFI GGGAC 2 cut(s) 772, 1167
BslI CCNNNNNNNGG 9 cut(s) 117, 143, 173, 248, 578, 858, 911, 1175, 1204
BsmAI GTCTC 2 cut(s) 703, 876
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 2 cut(s) 772, 1167
BsnI GGCC 4 cut(s) 136, 157, 779, 1235
Bsp1286I GDGCHC 4 cut(s) 79, 255, 864, 1017
Bsp13I TCCGGA 1 cut(s) 851
Bsp143I GATC 2 cut(s) 160, 1107
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 3 cut(s) 247, 599, 1160
BspACI CCGC 6 cut(s) 171, 383, 396, 607, 986, 1189
BspANI GGCC 4 cut(s) 136, 157, 779, 1235
BspCNI CTCAG 6 cut(s) 303, 658, 703, 901, 943, 970
BspEI TCCGGA 1 cut(s) 851
BspLI GGNNCC 4 cut(s) 254, 1073, 1196, 1210
BspMAI CTGCAG 1 cut(s) 1086
BspMI ACCTGC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 1034
BspT107I GGYRCC 2 cut(s) 252, 1208
BsrFI RCCGGY 2 cut(s) 173, 1197
BsrI ACTGG 1 cut(s) 533
BssAI RCCGGY 2 cut(s) 173, 1197
BssECI CCNNGG 8 cut(s) 217, 247, 549, 572, 599, 636, 1160, 1212
BssMI GATC 2 cut(s) 160, 1107
BssNI GRCGYC 1 cut(s) 885
BssT1I CCWWGG 7 cut(s) 247, 549, 572, 599, 636, 1160, 1212
Bst4CI ACNGT 3 cut(s) 279, 1141, 1324
Bst6I CTCTTC 2 cut(s) 109, 1034
BstACI GRCGYC 1 cut(s) 885
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 4 cut(s) 91, 138, 996, 1199
BstDEI CTNAG 6 cut(s) 311, 645, 690, 909, 930, 978
BstDSI CCRYGG 3 cut(s) 247, 599, 1160
BstF5I GGATG 9 cut(s) 70, 163, 519, 712, 848, 1169, 1170, 1322, 1338
BstH2I RGCGCY 1 cut(s) 1137
BstHHI GCGC 1 cut(s) 1136
BstKTI GATC 2 cut(s) 163, 1110
BstMAI GTCTC 2 cut(s) 703, 876
BstMBI GATC 2 cut(s) 160, 1107
BstMWI GCNNNNNNNGC 8 cut(s) 14, 74, 137, 146, 293, 974, 983, 995
BstNSI RCATGY 1 cut(s) 466
BstPAI GACNNNNGTC 1 cut(s) 1125
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 1082
BstSLI GKGCMC 2 cut(s) 255, 864
BstV1I GCAGC 8 cut(s) 17, 20, 50, 80, 222, 1068, 1096, 1296
BstV2I GAAGAC 1 cut(s) 416
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 4 cut(s) 136, 157, 779, 1235
BtgI CCRYGG 3 cut(s) 247, 599, 1160
BtgZI GCGATG 1 cut(s) 803
BtsCI GGATG 9 cut(s) 70, 163, 519, 712, 848, 1169, 1170, 1322, 1338
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 4 cut(s) 308, 375, 1073, 1137
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 4 cut(s) 91, 138, 996, 1199
CfoI GCGC 1 cut(s) 1136
Cfr10I RCCGGY 2 cut(s) 173, 1197
Cfr13I GGNCC 5 cut(s) 134, 155, 352, 778, 1233
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 2 cut(s) 222, 405
CviAII CATG 7 cut(s) 181, 248, 301, 463, 600, 889, 1161
CviQI GTAC 2 cut(s) 222, 405
DdeI CTNAG 6 cut(s) 311, 645, 690, 909, 930, 978
DpnI GATC 2 cut(s) 162, 1109
DpnII GATC 2 cut(s) 160, 1107
Eam1104I CTCTTC 2 cut(s) 109, 1034
EarI CTCTTC 2 cut(s) 109, 1034
EciI GGCGGA 1 cut(s) 622
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 7 cut(s) 247, 549, 572, 599, 636, 1160, 1212
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 1018
Eco72I CACGTG 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 371
EcoT14I CCWWGG 7 cut(s) 247, 549, 572, 599, 636, 1160, 1212
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 7 cut(s) 247, 549, 572, 599, 636, 1160, 1212
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 7 cut(s) 184, 251, 304, 466, 603, 892, 1164
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FaqI GGGAC 2 cut(s) 772, 1167
FatI CATG 7 cut(s) 180, 247, 300, 462, 599, 888, 1160
FauNDI CATATG 1 cut(s) 718
FblI GTMKAC 1 cut(s) 211
FokI GGATG 9 cut(s) 77, 150, 526, 699, 835, 1156, 1177, 1329, 1345
FriOI GRGCYC 1 cut(s) 79
FspBI CTAG 5 cut(s) 117, 207, 243, 345, 1348
GlaI GCGC 1 cut(s) 1135
GsaI CCCAGC 4 cut(s) 135, 321, 1305, 1316
GsuI CTGGAG 1 cut(s) 1088
HaeII RGCGCY 1 cut(s) 1137
HaeIII GGCC 4 cut(s) 136, 157, 779, 1235
HapII CCGG 6 cut(s) 174, 193, 219, 852, 1148, 1198
HgaI GACGC 1 cut(s) 1115
HhaI GCGC 1 cut(s) 1136
Hin1I GRCGYC 1 cut(s) 885
Hin1II CATG 7 cut(s) 184, 251, 304, 466, 603, 892, 1164
Hin6I GCGC 1 cut(s) 1134
HinP1I GCGC 1 cut(s) 1134
HincII GTYRAC 2 cut(s) 190, 212
HindII GTYRAC 2 cut(s) 190, 212
HindIII AAGCTT 1 cut(s) 996
HinfI GANTC 3 cut(s) 196, 830, 895
HpaII CCGG 6 cut(s) 174, 193, 219, 852, 1148, 1198
HphI GGTGA 1 cut(s) 926
Hpy166II GTNNAC 3 cut(s) 190, 212, 355
Hpy188I TCNGA 9 cut(s) 648, 693, 739, 868, 881, 910, 1037, 1048, 1076
Hpy188III TCNNGA 5 cut(s) 325, 827, 834, 852, 1105
Hpy8I GTNNAC 3 cut(s) 190, 212, 355
HpyAV CCTTC 8 cut(s) 146, 484, 689, 769, 851, 915, 1003, 1221
HpyCH4III ACNGT 3 cut(s) 279, 1141, 1324
HpyCH4IV ACGT 3 cut(s) 885, 964, 1259
HpyCH4V TGCA 8 cut(s) 140, 238, 427, 466, 815, 968, 1084, 1277
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 74, 137, 146, 293, 974, 983, 995
HpyF3I CTNAG 6 cut(s) 311, 645, 690, 909, 930, 978
HpySE526I ACGT 3 cut(s) 885, 964, 1259
Hsp92I GRCGYC 1 cut(s) 885
Hsp92II CATG 7 cut(s) 184, 251, 304, 466, 603, 892, 1164
HspAI GCGC 1 cut(s) 1134
Kpn2I TCCGGA 1 cut(s) 851
KroI GCCGGC 1 cut(s) 1197
KroNI GCCGGC 1 cut(s) 1199
Kzo9I GATC 2 cut(s) 160, 1107
LguI GCTCTTC 1 cut(s) 1034
LmnI GCTCC 4 cut(s) 82, 146, 1012, 1194
Lsp1109I GCAGC 8 cut(s) 17, 20, 50, 80, 222, 1068, 1096, 1296
LweI GCATC 6 cut(s) 55, 118, 370, 760, 857, 1155
MaeI CTAG 5 cut(s) 117, 207, 243, 345, 1348
MaeII ACGT 3 cut(s) 885, 964, 1259
MaeIII GTNAC 1 cut(s) 1335
MalI GATC 2 cut(s) 162, 1109
MboI GATC 2 cut(s) 160, 1107
MboII GAAGA 5 cut(s) 96, 99, 421, 1021, 1024
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 4 cut(s) 79, 255, 864, 1017
MluCI AATT 3 cut(s) 141, 371, 626
MmeI TCCRAC 1 cut(s) 891
MroI TCCGGA 1 cut(s) 851
MroNI GCCGGC 1 cut(s) 1197
MseI TTAA 3 cut(s) 281, 657, 1023
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 2 cut(s) 398, 1087
MspI CCGG 6 cut(s) 174, 193, 219, 852, 1148, 1198
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 8 cut(s) 14, 74, 137, 146, 293, 974, 983, 995
NaeI GCCGGC 1 cut(s) 1199
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 3 cut(s) 247, 599, 1160
NdeI CATATG 1 cut(s) 718
NdeII GATC 2 cut(s) 160, 1107
NgoMIV GCCGGC 1 cut(s) 1197
NlaIII CATG 7 cut(s) 184, 251, 304, 466, 603, 892, 1164
NlaIV GGNNCC 4 cut(s) 254, 1073, 1196, 1210
NmeAIII GCCGAG 1 cut(s) 1030
NspI RCATGY 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 1034
PdiI GCCGGC 1 cut(s) 1199
PfeI GAWTC 3 cut(s) 196, 830, 895
PmaCI CACGTG 1 cut(s) 965
PmlI CACGTG 1 cut(s) 965
Ppu21I YACGTR 1 cut(s) 965
PshAI GACNNNNGTC 1 cut(s) 1125
Psp124BI GAGCTC 1 cut(s) 79
PspCI CACGTG 1 cut(s) 965
PspFI CCCAGC 4 cut(s) 131, 317, 1301, 1312
PspN4I GGNNCC 4 cut(s) 254, 1073, 1196, 1210
PspPI GGNCC 5 cut(s) 134, 155, 352, 778, 1233
PstI CTGCAG 1 cut(s) 1086
PvuII CAGCTG 1 cut(s) 1087
RsaI GTAC 2 cut(s) 223, 406
RsaNI GTAC 2 cut(s) 222, 405
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 79
SalI GTCGAC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 1034
SaqAI TTAA 3 cut(s) 281, 657, 1023
Sau3AI GATC 2 cut(s) 160, 1107
Sau96I GGNCC 5 cut(s) 134, 155, 352, 778, 1233
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 4 cut(s) 79, 255, 864, 1017
SfaNI GCATC 6 cut(s) 55, 118, 370, 760, 857, 1155
SfcI CTRYAG 1 cut(s) 1082
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 717
Sse9I AATT 3 cut(s) 141, 371, 626
SsiI CCGC 6 cut(s) 171, 383, 396, 607, 986, 1189
SspI AATATT 1 cut(s) 452
SspMI CTAG 5 cut(s) 117, 207, 243, 345, 1348
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 7 cut(s) 247, 549, 572, 599, 636, 1160, 1212
TaaI ACNGT 3 cut(s) 279, 1141, 1324
TaiI ACGT 3 cut(s) 888, 967, 1262
TaqI TCGA 1 cut(s) 211
TaqII GACCGA 1 cut(s) 1277
TasI AATT 3 cut(s) 141, 371, 626
TauI GCSGC 2 cut(s) 173, 989
TfiI GAWTC 3 cut(s) 196, 830, 895
Tru1I TTAA 3 cut(s) 281, 657, 1023
Tru9I TTAA 3 cut(s) 281, 657, 1023
TscAI CASTG 4 cut(s) 315, 382, 1073, 1144
TseI GCWGC 8 cut(s) 5, 8, 38, 93, 235, 1081, 1084, 1309
TspDTI ATGAA 3 cut(s) 169, 503, 639
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 4 cut(s) 315, 382, 1073, 1144
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 5 cut(s) 117, 207, 243, 345, 1348
ZraI GACGTC 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.