Rmu_ssc0000368.1_g000040

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000368.1
Physical Location & Seq
Reverse (-)
210984 .. 212571
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000368.1_g000040.1.cds

Sequence Viewer

Length: 1365 bp
atggcgggagcagaagcaagggctgtgtggcagagaacagctaatcgttgctttgtccaagaagatgcaaaaagagctcccaaattagcttattgtcaatcctcatcttcaacaaccaagcaggtgggtgctgggcctgcaactgcaacagaaggattagatcatcctggtgttggcttcatgcctattaataggaatcgttcatattccaatctacccccagacacaagatggtggctgcaaatgcaacctaactatggctaccaaaaagatttaacctatgaacagttaaatgagttggaggctgacatggaaacactgagagctgggtttgtagaacaaacatccaaaaacagtgagttcaaccaacataaaggaaaatttactgatggtgattgtatgaagacaggttatgaagtccaaaagaaagatgtagacgctgaatatggtgagaacatacaggaacttcggtacaaggacatgagggaaacatatgaaaaaatggggatagataccattgattgcccagtttcagaacagtccaaggagttgtcttgtgaaccagaatatccttggatgggaggtgggaggactgaaccttggtggcggacaactgatagagatgaactggcctccttggttgcacaaaagtcacttaaccatattgagaactgtgatcttcccccacctcagaaactgtatcataagagacatccatatgctgctcatgttgggttttctgactgcgatggaatattggggacatctttagacaggaaggctcaagccagtggtttttccagtatgactactcatgcacagggatatgctgatactgggataacacatggaaaaaatggagatgcagctgatgaagagcactccgacacatcaatcagggatctcttagatctgcaacaacttactgagggtgaccctaccaaagctcagctaattgaagcactgtgccattctcaaacacgtgcaagggaagctgagaaggcagcaaagcaagcttgtgctgagaaggagcatatttttaagctcttctttaaacaagcttctcagctctttgcctataggcagtggttccaattgctgcagctggaaaccctttatgtccagattaagaacaaggaccaggtaggctccactgttctcccagtggtccttccttggatgtcaagcagacgtcgaaaatcgcacaggagctggcgtaaggttcccaaaggtaaacgaagcaggcgggtctaccccggatatgacatttccaagtacgccgttgctcttgcactggggttcggtctcgttggggctgggttgctcctgggatggactgtgggttggatgttaccttctttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

51.34

Weight (kDa)

7.17

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
AatII GACGTC 1 cut(s) 1195
Acc36I ACCTGC 1 cut(s) 112
AccI GTMKAC 2 cut(s) 435, 1251
AciI CCGC 3 cut(s) 5, 607, 1246
AclWI GGATC 1 cut(s) 909
AcsI RAATTY 1 cut(s) 380
AcvI CACGTG 1 cut(s) 983
AcyI GRCGYC 1 cut(s) 1192
AfaI GTAC 2 cut(s) 473, 1277
AfiI CCNNNNNNNGG 3 cut(s) 173, 257, 578
AflIII ACRYGT 1 cut(s) 980
AgsI TTSAA 3 cut(s) 111, 364, 959
AjnI CCWGG 3 cut(s) 166, 1140, 1326
Alw21I GWGCWC 2 cut(s) 79, 882
Alw26I GTCTC 2 cut(s) 703, 1310
AlwI GGATC 1 cut(s) 909
AlwNI CAGNNNCTG 2 cut(s) 697, 1212
AoxI GGCC 2 cut(s) 134, 630
ApeKI GCWGC 6 cut(s) 238, 722, 866, 1004, 1099, 1102
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 1 cut(s) 189
AspS9I GGNCC 3 cut(s) 134, 1138, 1168
AsuC2I CCSGG 1 cut(s) 1257
AsuHPI GGTGA 3 cut(s) 404, 461, 944
AvaII GGWCC 2 cut(s) 1138, 1168
BanII GRGCYC 1 cut(s) 79
BbrPI CACGTG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 79, 882
BbvI GCAGC 6 cut(s) 225, 709, 878, 1016, 1086, 1114
BccI CCATC 5 cut(s) 225, 383, 571, 743, 1326
BceAI ACGGC 1 cut(s) 1265
BciT130I CCWGG 3 cut(s) 168, 1142, 1328
BcnI CCSGG 1 cut(s) 1257
BcoDI GTCTC 2 cut(s) 703, 1310
BfaI CTAG 1 cut(s) 1363
BfmI CTRYAG 2 cut(s) 1078, 1100
BfuAI ACCTGC 1 cut(s) 112
BglII AGATCT 1 cut(s) 910
BisI GCNGC 6 cut(s) 239, 723, 867, 1005, 1100, 1103
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 6 cut(s) 240, 724, 868, 1006, 1101, 1104
Bme1390I CCNGG 4 cut(s) 168, 1142, 1257, 1328
Bme18I GGWCC 2 cut(s) 1138, 1168
BmgT120I GGNCC 3 cut(s) 134, 1138, 1168
BmiI GGNNCC 3 cut(s) 1091, 1150, 1224
BmrFI CCNGG 4 cut(s) 168, 1142, 1257, 1328
BmrI ACTGGG 4 cut(s) 521, 846, 1157, 1304
BmsI GCATC 2 cut(s) 55, 853
BmuI ACTGGG 4 cut(s) 521, 846, 1157, 1304
BpiI GAAGAC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 768
BpuMI CCSGG 1 cut(s) 1257
BsaAI YACGTR 1 cut(s) 983
BsaHI GRCGYC 1 cut(s) 1192
BsaI GGTCTC 1 cut(s) 1310
BsaJI CCNNGG 7 cut(s) 543, 572, 599, 636, 1175, 1255, 1327
BsaXI ACNNNNNCTCC 2 cut(s) 1201, 1231
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 257, 578
Bse1I ACTGG 7 cut(s) 527, 633, 789, 801, 841, 1163, 1299
BseBI CCWGG 3 cut(s) 168, 1142, 1328
BseDI CCNNGG 7 cut(s) 543, 572, 599, 636, 1175, 1255, 1327
BseGI GGATG 7 cut(s) 163, 344, 582, 712, 1185, 1337, 1353
BseLI CCNNNNNNNGG 3 cut(s) 173, 257, 578
BseMII CTCAG 7 cut(s) 311, 704, 918, 962, 987, 1014, 1079
BseNI ACTGG 7 cut(s) 527, 633, 789, 801, 841, 1163, 1299
BseXI GCAGC 6 cut(s) 225, 709, 878, 1016, 1086, 1114
BseYI CCCAGC 3 cut(s) 131, 326, 1316
BshFI GGCC 2 cut(s) 136, 632
BsiHKAI GWGCWC 2 cut(s) 79, 882
BsiSI CCGG 1 cut(s) 1257
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 3 cut(s) 173, 257, 578
BsmAI GTCTC 2 cut(s) 703, 1310
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 2 cut(s) 136, 632
Bso31I GGTCTC 1 cut(s) 1310
Bsp1286I GDGCHC 2 cut(s) 79, 882
Bsp143I GATC 4 cut(s) 160, 676, 901, 910
Bsp1720I GCTNAGC 1 cut(s) 948
BspACI CCGC 3 cut(s) 5, 607, 1246
BspANI GGCC 2 cut(s) 136, 632
BspCNI CTCAG 7 cut(s) 312, 703, 919, 961, 988, 1015, 1078
BspLI GGNNCC 3 cut(s) 1091, 1150, 1224
BspMAI CTGCAG 1 cut(s) 1104
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 909
BspQI GCTCTTC 2 cut(s) 870, 1052
BspTNI GGTCTC 1 cut(s) 1310
BsrI ACTGG 7 cut(s) 527, 633, 789, 801, 841, 1163, 1299
BssECI CCNNGG 7 cut(s) 543, 572, 599, 636, 1175, 1255, 1327
BssMI GATC 4 cut(s) 160, 676, 901, 910
BssNI GRCGYC 1 cut(s) 1192
BssT1I CCWWGG 5 cut(s) 543, 572, 599, 636, 1175
Bst2UI CCWGG 3 cut(s) 168, 1142, 1328
Bst4CI ACNGT 8 cut(s) 288, 356, 540, 674, 699, 966, 1156, 1339
Bst6I CTCTTC 2 cut(s) 870, 1052
BstACI GRCGYC 1 cut(s) 1192
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 4 cut(s) 138, 1014, 1214, 1244
BstDEI CTNAG 8 cut(s) 320, 690, 907, 927, 948, 996, 1023, 1065
BstEII GGTNACC 1 cut(s) 932
BstF5I GGATG 7 cut(s) 163, 344, 582, 712, 1185, 1337, 1353
BstKTI GATC 4 cut(s) 163, 679, 904, 913
BstMAI GTCTC 2 cut(s) 703, 1310
BstMBI GATC 4 cut(s) 160, 676, 901, 910
BstMWI GCNNNNNNNGC 6 cut(s) 74, 137, 244, 992, 1001, 1013
BstNI CCWGG 3 cut(s) 168, 1142, 1328
BstPI GGTNACC 1 cut(s) 932
BstSCI CCNGG 4 cut(s) 166, 1140, 1255, 1326
BstSFI CTRYAG 2 cut(s) 1078, 1100
BstV1I GCAGC 6 cut(s) 225, 709, 878, 1016, 1086, 1114
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 901, 910
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 901, 910
BsuRI GGCC 2 cut(s) 136, 632
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 7 cut(s) 163, 344, 582, 712, 1185, 1337, 1353
BtsI GCAGTG 1 cut(s) 1091
BtsIMutI CAGTG 8 cut(s) 317, 361, 796, 962, 1091, 1152, 1170, 1292
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 4 cut(s) 138, 1014, 1214, 1244
CaiI CAGNNNCTG 2 cut(s) 697, 1212
Cfr13I GGNCC 3 cut(s) 134, 1138, 1168
CseI GACGC 1 cut(s) 446
CsiI ACCWGGT 1 cut(s) 1140
Csp6I GTAC 2 cut(s) 472, 1276
CviAII CATG 6 cut(s) 181, 310, 481, 728, 815, 848
CviQI GTAC 2 cut(s) 472, 1276
DdeI CTNAG 8 cut(s) 320, 690, 907, 927, 948, 996, 1023, 1065
DpnI GATC 4 cut(s) 162, 678, 903, 912
DpnII GATC 4 cut(s) 160, 676, 901, 910
DraI TTTAAA 1 cut(s) 1054
Eam1104I CTCTTC 2 cut(s) 870, 1052
EarI CTCTTC 2 cut(s) 870, 1052
EciI GGCGGA 1 cut(s) 622
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 5 cut(s) 543, 572, 599, 636, 1175
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 1310
Eco47I GGWCC 2 cut(s) 1138, 1168
Eco53kI GAGCTC 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 983
Eco91I GGTNACC 1 cut(s) 932
EcoICRI GAGCTC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 932
EcoRII CCWGG 3 cut(s) 166, 1140, 1326
EcoT14I CCWWGG 5 cut(s) 543, 572, 599, 636, 1175
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 5 cut(s) 543, 572, 599, 636, 1175
FaeI CATG 6 cut(s) 184, 313, 484, 731, 818, 851
FalI AAGNNNNNCTT 2 cut(s) 1034, 1066
FaqI GGGAC 1 cut(s) 775
FatI CATG 6 cut(s) 180, 309, 480, 727, 814, 847
FauI CCCGC 1 cut(s) 1239
FauNDI CATATG 2 cut(s) 493, 718
FblI GTMKAC 2 cut(s) 435, 1251
Fnu4HI GCNGC 6 cut(s) 239, 723, 867, 1005, 1100, 1103
FokI GGATG 7 cut(s) 150, 331, 589, 699, 1192, 1344, 1360
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 239, 723, 867, 1005, 1100, 1103
FspBI CTAG 1 cut(s) 1363
GluI GCNGC 6 cut(s) 239, 723, 867, 1005, 1100, 1103
GsaI CCCAGC 3 cut(s) 135, 330, 1320
HaeIII GGCC 2 cut(s) 136, 632
HapII CCGG 1 cut(s) 1257
HgaI GACGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 1192
Hin1II CATG 6 cut(s) 184, 313, 484, 731, 818, 851
HindIII AAGCTT 2 cut(s) 1014, 1059
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 1257
HphI GGTGA 3 cut(s) 404, 461, 944
Hpy166II GTNNAC 4 cut(s) 436, 560, 1235, 1252
Hpy188I TCNGA 4 cut(s) 535, 693, 742, 886
Hpy188III TCNNGA 1 cut(s) 1123
Hpy8I GTNNAC 4 cut(s) 436, 560, 1235, 1252
Hpy99I CGWCG 1 cut(s) 1197
HpyAV CCTTC 6 cut(s) 146, 772, 994, 1021, 1181, 1365
HpyCH4III ACNGT 8 cut(s) 288, 356, 540, 674, 699, 966, 1156, 1339
HpyCH4IV ACGT 2 cut(s) 982, 1192
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 137, 244, 992, 1001, 1013
HpyF3I CTNAG 8 cut(s) 320, 690, 907, 927, 948, 996, 1023, 1065
HpySE526I ACGT 2 cut(s) 982, 1192
Hsp92I GRCGYC 1 cut(s) 1192
Hsp92II CATG 6 cut(s) 184, 313, 484, 731, 818, 851
Kzo9I GATC 4 cut(s) 160, 676, 901, 910
LguI GCTCTTC 2 cut(s) 870, 1052
LmnI GCTCC 6 cut(s) 8, 82, 1030, 1154, 1209, 1329
Lsp1109I GCAGC 6 cut(s) 225, 709, 878, 1016, 1086, 1114
LweI GCATC 2 cut(s) 55, 853
MabI ACCWGGT 1 cut(s) 1140
MaeI CTAG 1 cut(s) 1363
MaeII ACGT 2 cut(s) 982, 1192
MaeIII GTNAC 3 cut(s) 651, 932, 1350
MalI GATC 4 cut(s) 162, 678, 903, 912
MboI GATC 4 cut(s) 160, 676, 901, 910
MboII GAAGA 6 cut(s) 74, 99, 415, 671, 887, 1039
MfeI CAATTG 1 cut(s) 1094
MflI RGATCY 2 cut(s) 901, 910
MhlI GDGCHC 2 cut(s) 79, 882
MluCI AATT 4 cut(s) 83, 380, 954, 1094
MmeI TCCRAC 3 cut(s) 279, 909, 1325
MnlI CCTC 8 cut(s) 112, 295, 477, 575, 582, 643, 699, 922
MseI TTAA 7 cut(s) 189, 275, 290, 657, 1041, 1053, 1128
MslI CAYNNNNRTG 2 cut(s) 168, 717
MspA1I CMGCKG 2 cut(s) 869, 1105
MspI CCGG 1 cut(s) 1257
MspR9I CCNGG 4 cut(s) 168, 1142, 1257, 1328
MunI CAATTG 1 cut(s) 1094
MvaI CCWGG 3 cut(s) 168, 1142, 1328
MwoI GCNNNNNNNGC 6 cut(s) 74, 137, 244, 992, 1001, 1013
NciI CCSGG 1 cut(s) 1257
NdeI CATATG 2 cut(s) 493, 718
NdeII GATC 4 cut(s) 160, 676, 901, 910
NlaIII CATG 6 cut(s) 184, 313, 484, 731, 818, 851
NlaIV GGNNCC 3 cut(s) 1091, 1150, 1224
NmuCI GTSAC 2 cut(s) 651, 932
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 2 cut(s) 870, 1052
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 6 cut(s) 240, 724, 868, 1006, 1101, 1104
PmaCI CACGTG 1 cut(s) 983
PmlI CACGTG 1 cut(s) 983
Ppu21I YACGTR 1 cut(s) 983
PshBI ATTAAT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 166, 1140, 1326
PspCI CACGTG 1 cut(s) 983
PspEI GGTNACC 1 cut(s) 932
PspFI CCCAGC 3 cut(s) 131, 326, 1316
PspGI CCWGG 3 cut(s) 166, 1140, 1326
PspN4I GGNNCC 3 cut(s) 1091, 1150, 1224
PspPI GGNCC 3 cut(s) 134, 1138, 1168
PstI CTGCAG 1 cut(s) 1104
PstNI CAGNNNCTG 2 cut(s) 697, 1212
PsuI RGATCY 2 cut(s) 901, 910
PvuII CAGCTG 2 cut(s) 869, 1105
RsaI GTAC 2 cut(s) 473, 1277
RsaNI GTAC 2 cut(s) 472, 1276
RseI CAYNNNNRTG 2 cut(s) 168, 717
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 2 cut(s) 870, 1052
SaqAI TTAA 7 cut(s) 189, 275, 290, 657, 1041, 1053, 1128
SatI GCNGC 6 cut(s) 239, 723, 867, 1005, 1100, 1103
Sau3AI GATC 4 cut(s) 160, 676, 901, 910
Sau96I GGNCC 3 cut(s) 134, 1138, 1168
ScrFI CCNGG 4 cut(s) 168, 1142, 1257, 1328
SduI GDGCHC 2 cut(s) 79, 882
SexAI ACCWGGT 1 cut(s) 1140
SfaNI GCATC 2 cut(s) 55, 853
SfcI CTRYAG 2 cut(s) 1078, 1100
SinI GGWCC 2 cut(s) 1138, 1168
SmiMI CAYNNNNRTG 2 cut(s) 168, 717
SmlI CTYRAG 1 cut(s) 783
SmoI CTYRAG 1 cut(s) 783
Sse9I AATT 4 cut(s) 83, 380, 954, 1094
SsiI CCGC 3 cut(s) 5, 607, 1246
SspI AATATT 1 cut(s) 756
SspMI CTAG 1 cut(s) 1363
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 4 cut(s) 166, 1140, 1255, 1326
StyI CCWWGG 5 cut(s) 543, 572, 599, 636, 1175
TaaI ACNGT 8 cut(s) 288, 356, 540, 674, 699, 966, 1156, 1339
TaiI ACGT 2 cut(s) 985, 1195
TaqI TCGA 1 cut(s) 1195
TaqII GACCGA 1 cut(s) 1292
TasI AATT 4 cut(s) 83, 380, 954, 1094
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 7 cut(s) 189, 275, 290, 657, 1041, 1053, 1128
Tru9I TTAA 7 cut(s) 189, 275, 290, 657, 1041, 1053, 1128
TscAI CASTG 8 cut(s) 324, 361, 796, 969, 1091, 1159, 1170, 1299
TseFI GTSAC 2 cut(s) 651, 932
TseI GCWGC 6 cut(s) 238, 722, 866, 1004, 1099, 1102
Tsp45I GTSAC 2 cut(s) 651, 932
TspDTI ATGAA 8 cut(s) 169, 192, 297, 416, 429, 510, 639, 888
TspRI CASTG 8 cut(s) 324, 361, 796, 969, 1091, 1159, 1170, 1299
VpaK11BI GGWCC 2 cut(s) 1138, 1168
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 2 cut(s) 228, 570
XmiI GTMKAC 2 cut(s) 435, 1251
XspI CTAG 1 cut(s) 1363
ZraI GACGTC 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.