Rorug01G0275100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002482
Physical Location & Seq
Reverse (-)
38722244 .. 38724386
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0275100.1

Sequence Viewer

Length: 798 bp
ATGCCGCGGTGGTTCGACCTCAAGCTTGATCGGCGCAAAGCGATTCTGCTGAAGAAGGCCGTCGGCGCCATGGCTCAGGTAGCCTTTACCGACAGAGAGCTCGCCGGCCGCCCCCAAACCGCCGACCTCTGCATCACTCCGGAGATCGTCGCACTGGTTTCCAAAACCAAGTCAACTGATGCCGTCGGCGTGCTGCTGATGCCGGAACCGTTGATGTCGAGCTTCGAGTGCTACGAAAGCCGGAATCTGCAGTTCAATCTGCACAGCTTGCTTTGCCTATTGGAGCAGAACACTGAGTTTGCGGTCACTCTTTATGGCGAGGTAGAAGATGAGGATGTGATTTGGTACGAGCTTGAGGAAGGATTTCGCACGATTTACACCTCTACAATGCGGCTGGTTTCATGGACTAAGGATGAGATGGACCTGGGTTTCTTGGTATATAAATATCCAGTGCGCCTCGGCTTGTCTGCAAAGAGCTTTTGTGACCTTATCACTGATATGGGTTCTCATGGGTGTACAGTTCATGCCACACTGTTCAAAAATGCAGTTGTTTTCCGTGTAGTGAATTACGAGCTTGTCTTCCCAACAGAGCCCTTGATTTGCGAGACACAGAGTGATCGTGGATTTCCTTGTGTGTTGAAGTTTGATATCCAGCACAAAAGAGCGCTTCTCAATGCCGCTACGTTGTCAGAGATGATATGGATATGGTTCTCGGATTCGTTCACCATGCTCAATTTCCCAATTCGTGGCCTGGGTAAACTTGTCTTTGGCCATCATAACTTTATGGTGACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.28

Weight (kDa)

5.57

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 746
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 7 cut(s) 5, 7, 109, 120, 302, 391, 678
AcoI YGGCCR 2 cut(s) 106, 769
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 347, 517
AfeI AGCGCT 1 cut(s) 666
AfiI CCNNNNNNNGG 1 cut(s) 746
AgsI TTSAA 3 cut(s) 256, 538, 640
AjnI CCWGG 2 cut(s) 423, 750
AluBI AGCT 7 cut(s) 25, 100, 222, 267, 352, 477, 574
AluI AGCT 7 cut(s) 25, 100, 222, 267, 352, 477, 574
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 139
Aor51HI AGCGCT 1 cut(s) 666
AoxI GGCC 4 cut(s) 57, 106, 748, 769
ApeKI GCWGC 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 4 cut(s) 36, 68, 456, 667
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 2 cut(s) 102, 594
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 412, 780
BceAI ACGGC 2 cut(s) 44, 167
BciT130I CCWGG 2 cut(s) 425, 752
BcoDI GTCTC 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 248
BfoI RGCGCY 2 cut(s) 69, 668
BisI GCNGC 5 cut(s) 5, 109, 194, 392, 678
BlsI GCNGC 5 cut(s) 6, 110, 195, 393, 679
Bme1390I CCNGG 2 cut(s) 425, 752
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 2 cut(s) 67, 207
BmrFI CCNGG 2 cut(s) 425, 752
BmsI GCATC 3 cut(s) 141, 169, 189
BpiI GAAGAC 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 654, 686
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 5, 374
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 5 cut(s) 5, 69, 424, 457, 751
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 159, 449
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 2 cut(s) 425, 752
BseDI CCNNGG 5 cut(s) 5, 69, 424, 457, 751
BseGI GGATG 2 cut(s) 340, 418
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMII CTCAG 2 cut(s) 89, 285
BseNI ACTGG 2 cut(s) 159, 449
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 59, 108, 750, 771
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 4 cut(s) 105, 140, 203, 241
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 1 cut(s) 599
BsnI GGCC 4 cut(s) 59, 108, 750, 771
Bsp1286I GDGCHC 2 cut(s) 102, 594
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 515
Bsp143I GATC 3 cut(s) 28, 144, 616
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 7 cut(s) 5, 7, 109, 120, 302, 391, 678
BspANI GGCC 4 cut(s) 59, 108, 750, 771
BspCNI CTCAG 2 cut(s) 88, 286
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 67, 207
BspMAI CTGCAG 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 515
BsrI ACTGG 2 cut(s) 159, 449
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 5 cut(s) 5, 69, 424, 457, 751
BssMI GATC 3 cut(s) 28, 144, 616
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 425, 752
Bst4CI ACNGT 3 cut(s) 210, 520, 534
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 102, 106, 191, 269
BstDEI CTNAG 3 cut(s) 75, 294, 408
BstDSI CCRYGG 2 cut(s) 5, 69
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 2 cut(s) 340, 418
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 2 cut(s) 69, 668
BstHHI GCGC 4 cut(s) 36, 68, 456, 667
BstKTI GATC 3 cut(s) 31, 147, 619
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 3 cut(s) 28, 144, 616
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 8 cut(s) 31, 65, 80, 199, 228, 237, 268, 273
BstNI CCWGG 2 cut(s) 425, 752
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 2 cut(s) 423, 750
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 571
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 4 cut(s) 59, 108, 750, 771
BtgI CCRYGG 2 cut(s) 5, 69
BtsCI GGATG 2 cut(s) 340, 418
BtsIMutI CAGTG 5 cut(s) 152, 291, 456, 492, 530
Cac8I GCNNGC 4 cut(s) 102, 106, 191, 269
CfoI GCGC 4 cut(s) 36, 68, 456, 667
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 421
Cfr42I CCGCGG 1 cut(s) 8
Csp6I GTAC 2 cut(s) 346, 516
CviAII CATG 5 cut(s) 70, 402, 509, 524, 727
CviQI GTAC 2 cut(s) 346, 516
DdeI CTNAG 3 cut(s) 75, 294, 408
DinI GGCGCC 1 cut(s) 67
DpnI GATC 3 cut(s) 30, 146, 618
DpnII GATC 3 cut(s) 28, 144, 616
DraIII CACNNNGTG 1 cut(s) 614
EaeI YGGCCR 2 cut(s) 106, 769
EagI CGGCCG 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 102, 594
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 421
Eco47III AGCGCT 1 cut(s) 666
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 787
EcoRII CCWGG 2 cut(s) 423, 750
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 102, 594
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 5 cut(s) 73, 405, 512, 527, 730
FatI CATG 5 cut(s) 69, 401, 508, 523, 726
Fnu4HI GCNGC 5 cut(s) 5, 109, 194, 392, 678
FokI GGATG 2 cut(s) 347, 425
FriOI GRGCYC 2 cut(s) 102, 594
Fsp4HI GCNGC 5 cut(s) 5, 109, 194, 392, 678
GlaI GCGC 4 cut(s) 35, 67, 455, 666
GluI GCNGC 5 cut(s) 5, 109, 194, 392, 678
HaeII RGCGCY 2 cut(s) 69, 668
HaeIII GGCC 4 cut(s) 59, 108, 750, 771
HapII CCGG 4 cut(s) 105, 140, 203, 241
HhaI GCGC 4 cut(s) 36, 68, 456, 667
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 5 cut(s) 73, 405, 512, 527, 730
Hin6I GCGC 4 cut(s) 34, 66, 454, 665
HinP1I GCGC 4 cut(s) 34, 66, 454, 665
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 43, 244, 716
HpaII CCGG 4 cut(s) 105, 140, 203, 241
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 4 cut(s) 174, 516, 723, 758
Hpy188I TCNGA 2 cut(s) 691, 715
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 4 cut(s) 174, 516, 723, 758
Hpy99I CGWCG 3 cut(s) 65, 152, 188
HpyAV CCTTC 2 cut(s) 49, 353
HpyCH4III ACNGT 3 cut(s) 210, 520, 534
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 5 cut(s) 132, 250, 262, 470, 545
HpyF10VI GCNNNNNNNGC 8 cut(s) 31, 65, 80, 199, 228, 237, 268, 273
HpyF3I CTNAG 3 cut(s) 75, 294, 408
HpySE526I ACGT 1 cut(s) 683
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 5 cut(s) 73, 405, 512, 527, 730
HspAI GCGC 4 cut(s) 34, 66, 454, 665
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 3 cut(s) 28, 144, 616
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 3 cut(s) 141, 169, 189
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 3 cut(s) 304, 482, 787
MalI GATC 3 cut(s) 30, 146, 618
MboI GATC 3 cut(s) 28, 144, 616
MboII GAAGA 3 cut(s) 64, 338, 571
MhlI GDGCHC 2 cut(s) 102, 594
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 4 cut(s) 565, 733, 741, 793
MluNI TGGCCA 1 cut(s) 771
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 7 cut(s) 29, 137, 313, 325, 349, 391, 467
Mox20I TGGCCA 1 cut(s) 771
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 4 cut(s) 105, 140, 203, 241
MspR9I CCNGG 2 cut(s) 425, 752
MvaI CCWGG 2 cut(s) 425, 752
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 8 cut(s) 31, 65, 80, 199, 228, 237, 268, 273
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 66
NcoI CCATGG 1 cut(s) 69
NdeII GATC 3 cut(s) 28, 144, 616
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 73, 405, 512, 527, 730
NlaIV GGNNCC 2 cut(s) 67, 207
NmeAIII GCCGAG 1 cut(s) 438
NmuCI GTSAC 3 cut(s) 304, 482, 787
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 43, 244, 716
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 5 cut(s) 6, 110, 195, 393, 679
PluTI GGCGCC 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 423, 750
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 2 cut(s) 423, 750
PspN4I GGNNCC 2 cut(s) 67, 207
PspPI GGNCC 1 cut(s) 421
PstI CTGCAG 1 cut(s) 252
RsaI GTAC 2 cut(s) 347, 517
RsaNI GTAC 2 cut(s) 346, 516
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 8
SatI GCNGC 5 cut(s) 5, 109, 194, 392, 678
Sau3AI GATC 3 cut(s) 28, 144, 616
Sau96I GGNCC 1 cut(s) 421
ScrFI CCNGG 2 cut(s) 425, 752
SduI GDGCHC 2 cut(s) 102, 594
SfaNI GCATC 3 cut(s) 141, 169, 189
SfcI CTRYAG 1 cut(s) 248
SfoI GGCGCC 1 cut(s) 67
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 20, 353
SmoI CTYRAG 2 cut(s) 20, 353
Sse9I AATT 4 cut(s) 565, 733, 741, 793
SsiI CCGC 7 cut(s) 5, 7, 109, 120, 302, 391, 678
SspDI GGCGCC 1 cut(s) 65
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 423, 750
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 210, 520, 534
TaiI ACGT 1 cut(s) 686
TaqI TCGA 3 cut(s) 15, 218, 225
TasI AATT 4 cut(s) 565, 733, 741, 793
TatI WGTACW 1 cut(s) 515
TauI GCSGC 4 cut(s) 7, 111, 394, 680
TfiI GAWTC 3 cut(s) 43, 244, 716
TscAI CASTG 5 cut(s) 159, 298, 456, 499, 537
TseFI GTSAC 3 cut(s) 304, 482, 787
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 3 cut(s) 304, 482, 787
TspDTI ATGAA 2 cut(s) 390, 512
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 5 cut(s) 159, 298, 456, 499, 537
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.