Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Reverse (-)

23073925 .. 23075590

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCAGCAGCTGAAGCACGGAGAGCATGGCAGCATAGAGCGAATTGTTGTTTTTCCCAAGATGATGGGAGGAGTGCTCAAAGATTTTCACGTCACCCGTCATCATCTTCCTCAAAAGAATCTGATAGTGCTCATGAGAATGCTTCATATGGGATTGATCACCTTATCCCAGAACGCACGCCTTATAACTCAACTCCGGAGCTAACACCCAGCACTAGATGGTGGTTAAACCTGGAACCAAACTTTGGGCCTCAAAAGGAATTTATTGATGATCAGCGAAAAAGCCTGGACGCTGAAGTGTTAAATTCTGGATATATCAATAAAACTGCCATCATAAATGATTATTATCAGTGCAAGGAGGTATTTAGTACTCAAAGTGATAGTGAAAAGAGTGTCAACTGTTTTTTGGAGAAACCATGTACTGTTTCAGTCACTTCTCCAAAAGGTGACCAAAGTAAGAGAATACAAGAACTCAAGGCTGGAACTGGTAATGGTCCACAGTTGCCTAAGAAAAGGGACACAGGAGAGTTTTGGTGCTGCGATGATGACTTCATGAACTTGGATTCTTTCAACAGCTTGGATTCTGAACAAAGCAAGAAGCTGTCTCCTGATTTGGATACCCAATGGGTGGGAAGTGAGAAGTCTGAACCATGGTGGCGCTCTGCTGGTAAAGATGAGTTGGCTTCCTTGGTTGCTCAGAAGTCACTTGAAAATGTTGAGAATTGTGATCTTCCACGGCCCCAGATTAGGATGGGCGCTCTCGCTTCTACAAAGTTTCCTGACCCTAATTTATCCTTAGATCAGATGACTGAACTGGGTTTATCCAATGTCACCACTTATACTCAGGGAAGCTTAACTTCAGGTCACTCAGCATATGATCCAGATAGTTCACTAAGCCACAACAATGATTATGCTGCAACCAACCAAGATGAGCCAGAAGATGAGCGGAGCAAAGCTCAGCTGCTGGAAGCGTTGTGTCATTCTCAGACACGAGCTAGGAAAGCTGAGAATGCTGCACAGCAGGCCTATACAGAGAAGGAGCACATCATCAGTCTCTTTTTCAAACAGGCATCACAGCTGTTTGCCTACAAGCAGTGGCTCCATCTGCTCCAAATTGAGAACTTTTGCCTGCAGCTGAACAAAAAAGATGGCTTACCATGGTCCCCATACAAGGGCAGACCCTTAAAAAAGAAGGGTCAGCGCAGGGCGGGAAGGAGGAGCGGCGGCAGGATAAGGTATGAGATCAGCAAGGGTGCTGTTGCTTTTGCTCTAGGATTAGGTCTTGCTGGTGCGGGCTTGCTCCTCGGATGGACTATGGGGTGGTTGTTTCCAGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

50.0

Weight (kDa)

6.35

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB7I	CCANNNNNTGG	2 cut(s)	245, 628
AccBSI	CCGCTC	2 cut(s)	946, 1221
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	5 cut(s)	946, 1208, 1221, 1224, 1292
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	2 cut(s)	260, 304
AcuI	CTGAAG	3 cut(s)	33, 315, 843
AfaI	GTAC	2 cut(s)	370, 421
AfiI	CCNNNNNNNGG	5 cut(s)	245, 628, 747, 1171, 1172
AgsI	TTSAA	3 cut(s)	571, 710, 1063
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	231, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
Alw21I	GWGCWC	3 cut(s)	79, 133, 1044
Alw26I	GTCTC	2 cut(s)	609, 1058
AlwI	GGATC	1 cut(s)	872
AlwNI	CAGNNNCTG	2 cut(s)	11, 964
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	248, 737, 1023
ApeKI	GCWGC	8 cut(s)	5, 8, 31, 537, 914, 961, 1013, 1132
ApoI	RAATTY	2 cut(s)	260, 304
AspLEI	GCGC	3 cut(s)	660, 758, 1203
AspS9I	GGNCC	4 cut(s)	248, 494, 738, 1161
AsuHPI	GGTGA	4 cut(s)	86, 152, 458, 823
AvaII	GGWCC	2 cut(s)	494, 1161
BauI	CACGAG	1 cut(s)	990
Bbv12I	GWGCWC	3 cut(s)	79, 133, 1044
BbvI	GCAGC	8 cut(s)	17, 20, 43, 524, 901, 948, 1000, 1144
BccI	CCATC	7 cut(s)	59, 213, 338, 745, 1110, 1142, 1302
BceAI	ACGGC	1 cut(s)	752
BciT130I	CCWGG	2 cut(s)	233, 287
BciVI	GTATCC	1 cut(s)	610
BclI	TGATCA	2 cut(s)	157, 271
BcoDI	GTCTC	2 cut(s)	609, 1058
BfaI	CTAG	3 cut(s)	216, 996, 1271
BfmI	CTRYAG	1 cut(s)	1130
BfoI	RGCGCY	2 cut(s)	661, 759
BfuI	GTATCC	1 cut(s)	610
BlpI	GCTNAGC	1 cut(s)	957
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	233, 287
Bme18I	GGWCC	2 cut(s)	494, 1161
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	4 cut(s)	248, 494, 738, 1161
BmiI	GGNNCC	4 cut(s)	237, 740, 1100, 1163
BmrFI	CCNGG	2 cut(s)	233, 287
BmrI	ACTGGG	1 cut(s)	824
BmsI	GCATC	1 cut(s)	1079
BmuI	ACTGGG	1 cut(s)	824
BplI	GAGNNNNNCTC	4 cut(s)	61, 93, 940, 972
Bpu1102I	GCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	5 cut(s)	650, 687, 734, 1157, 1303
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	5 cut(s)	245, 628, 747, 1171, 1172
Bse1I	ACTGG	2 cut(s)	490, 819
Bse8I	GATNNNNATC	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	233, 287
BseDI	CCNNGG	5 cut(s)	650, 687, 734, 1157, 1303
BseGI	GGATG	2 cut(s)	756, 1313
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	5 cut(s)	245, 628, 747, 1171, 1172
BseMII	CTCAG	6 cut(s)	710, 857, 882, 971, 996, 998
BseNI	ACTGG	2 cut(s)	490, 819
BseRI	GAGGAG	3 cut(s)	85, 1231, 1292
BseXI	GCAGC	8 cut(s)	17, 20, 43, 524, 901, 948, 1000, 1144
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	999
BshFI	GGCC	3 cut(s)	250, 739, 1025
BsiHKAI	GWGCWC	3 cut(s)	79, 133, 1044
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	2 cut(s)	530, 1147
BslI	CCNNNNNNNGG	5 cut(s)	245, 628, 747, 1171, 1172
BsmAI	GTCTC	2 cut(s)	609, 1058
BsmFI	GGGAC	2 cut(s)	530, 1147
BsmI	GAATGC	2 cut(s)	145, 1015
BsnI	GGCC	3 cut(s)	250, 739, 1025
Bsp1286I	GDGCHC	3 cut(s)	79, 133, 1044
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
Bsp1720I	GCTNAGC	1 cut(s)	957
Bsp19I	CCATGG	2 cut(s)	650, 1157
BspACI	CCGC	5 cut(s)	946, 1208, 1221, 1224, 1292
BspANI	GGCC	3 cut(s)	250, 739, 1025
BspCNI	CTCAG	6 cut(s)	709, 856, 881, 970, 997, 997
BspEI	TCCGGA	1 cut(s)	196
BspHI	TCATGA	2 cut(s)	133, 552
BspLI	GGNNCC	4 cut(s)	237, 740, 1100, 1163
BspMAI	CTGCAG	1 cut(s)	1134
BspPI	GGATC	1 cut(s)	872
BsrBI	CCGCTC	2 cut(s)	946, 1221
BsrI	ACTGG	2 cut(s)	490, 819
BssECI	CCNNGG	5 cut(s)	650, 687, 734, 1157, 1303
BssMI	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
BssSI	CACGAG	1 cut(s)	990
BssT1I	CCWWGG	3 cut(s)	650, 687, 1157
Bst2BI	CACGAG	1 cut(s)	990
Bst2UI	CCWGG	2 cut(s)	233, 287
Bst4CI	ACNGT	3 cut(s)	401, 424, 501
BstC8I	GCNNGC	5 cut(s)	179, 1023, 1130, 1294, 1298
BstDEI	CTNAG	9 cut(s)	507, 696, 796, 843, 868, 893, 957, 984, 1005
BstDSI	CCRYGG	3 cut(s)	650, 734, 1157
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	756, 1313
BstH2I	RGCGCY	2 cut(s)	661, 759
BstHHI	GCGC	3 cut(s)	660, 758, 1203
BstKTI	GATC	6 cut(s)	160, 274, 730, 802, 880, 1245
BstMAI	GTCTC	2 cut(s)	609, 1058
BstMBI	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 23, 1001, 1010, 1022, 1105
BstNI	CCWGG	2 cut(s)	233, 287
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	231, 285
BstSFI	CTRYAG	1 cut(s)	1130
BstV1I	GCAGC	8 cut(s)	17, 20, 43, 524, 901, 948, 1000, 1144
BstXI	CCANNNNNNTGG	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	250, 739, 1025
BtgI	CCRYGG	3 cut(s)	650, 734, 1157
BtgZI	GCGATG	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	756, 1313
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	2 cut(s)	356, 1100
Cac8I	GCNNGC	5 cut(s)	179, 1023, 1130, 1294, 1298
CaiI	CAGNNNCTG	2 cut(s)	11, 964
CciI	TCATGA	2 cut(s)	133, 552
CfoI	GCGC	3 cut(s)	660, 758, 1203
Cfr13I	GGNCC	4 cut(s)	248, 494, 738, 1161
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	369, 420
CviAII	CATG	6 cut(s)	27, 134, 417, 553, 651, 1158
CviQI	GTAC	2 cut(s)	369, 420
DdeI	CTNAG	9 cut(s)	507, 696, 796, 843, 868, 893, 957, 984, 1005
DpnI	GATC	6 cut(s)	159, 273, 729, 801, 879, 1244
DpnII	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
Eco130I	CCWWGG	3 cut(s)	650, 687, 1157
Eco147I	AGGCCT	1 cut(s)	1025
Eco47I	GGWCC	2 cut(s)	494, 1161
Eco57I	CTGAAG	3 cut(s)	33, 315, 843
Eco91I	GGTNACC	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	231, 285
EcoT14I	CCWWGG	3 cut(s)	650, 687, 1157
ErhI	CCWWGG	3 cut(s)	650, 687, 1157
FaeI	CATG	6 cut(s)	30, 137, 420, 556, 654, 1161
FalI	AAGNNNNNCTT	2 cut(s)	841, 873
FaqI	GGGAC	2 cut(s)	530, 1147
FatI	CATG	6 cut(s)	26, 133, 416, 552, 650, 1157
FauI	CCCGC	2 cut(s)	1201, 1285
FauNDI	CATATG	2 cut(s)	148, 874
FbaI	TGATCA	2 cut(s)	157, 271
FokI	GGATG	2 cut(s)	763, 1320
FspBI	CTAG	3 cut(s)	216, 996, 1271
GlaI	GCGC	3 cut(s)	659, 757, 1202
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	2 cut(s)	661, 759
HaeIII	GGCC	3 cut(s)	250, 739, 1025
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	3 cut(s)	660, 758, 1203
Hin1II	CATG	6 cut(s)	30, 137, 420, 556, 654, 1161
Hin6I	GCGC	3 cut(s)	658, 756, 1201
HinP1I	GCGC	3 cut(s)	658, 756, 1201
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	3 cut(s)	119, 563, 581
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	4 cut(s)	86, 152, 458, 823
Hpy166II	GTNNAC	3 cut(s)	397, 497, 890
Hpy188I	TCNGA	7 cut(s)	124, 586, 646, 699, 804, 987, 1307
Hpy188III	TCNNGA	7 cut(s)	134, 197, 309, 553, 608, 779, 881
Hpy8I	GTNNAC	3 cut(s)	397, 497, 890
HpyAV	CCTTC	3 cut(s)	1030, 1186, 1206
HpyCH4III	ACNGT	3 cut(s)	401, 424, 501
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	354, 917, 1016, 1132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 23, 1001, 1010, 1022, 1105
HpyF3I	CTNAG	9 cut(s)	507, 696, 796, 843, 868, 893, 957, 984, 1005
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	6 cut(s)	30, 137, 420, 556, 654, 1161
HspAI	GCGC	3 cut(s)	658, 756, 1201
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	2 cut(s)	157, 271
Kzo9I	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
LmnI	GCTCC	7 cut(s)	199, 948, 1039, 1104, 1113, 1218, 1305
Lsp1109I	GCAGC	8 cut(s)	17, 20, 43, 524, 901, 948, 1000, 1144
LweI	GCATC	1 cut(s)	1079
MaeI	CTAG	3 cut(s)	216, 996, 1271
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	6 cut(s)	92, 430, 446, 702, 829, 863
MalI	GATC	6 cut(s)	159, 273, 729, 801, 879, 1244
MbiI	CCGCTC	2 cut(s)	946, 1221
MboI	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
MboII	GAAGA	3 cut(s)	99, 722, 950
MhlI	GDGCHC	3 cut(s)	79, 133, 1044
MluCI	AATT	6 cut(s)	43, 260, 304, 721, 787, 1113
MnlI	CCTC	6 cut(s)	63, 121, 261, 352, 1209, 1313
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	4 cut(s)	227, 302, 854, 1184
MslI	CAYNNNNRTG	2 cut(s)	138, 903
MspA1I	CMGCKG	4 cut(s)	11, 961, 1078, 1135
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	233, 287
Mva1269I	GAATGC	2 cut(s)	145, 1015
MvaI	CCWGG	2 cut(s)	233, 287
MwoI	GCNNNNNNNGC	6 cut(s)	14, 23, 1001, 1010, 1022, 1105
NcoI	CCATGG	2 cut(s)	650, 1157
NdeI	CATATG	2 cut(s)	148, 874
NdeII	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
NlaIII	CATG	6 cut(s)	30, 137, 420, 556, 654, 1161
NlaIV	GGNNCC	4 cut(s)	237, 740, 1100, 1163
NmuCI	GTSAC	6 cut(s)	92, 430, 446, 702, 829, 863
PagI	TCATGA	2 cut(s)	133, 552
PceI	AGGCCT	1 cut(s)	1025
PctI	GAATGC	2 cut(s)	145, 1015
PfeI	GAWTC	3 cut(s)	119, 563, 581
PflMI	CCANNNNNTGG	2 cut(s)	245, 628
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	231, 285
PspEI	GGTNACC	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	231, 285
PspN4I	GGNNCC	4 cut(s)	237, 740, 1100, 1163
PspPI	GGNCC	4 cut(s)	248, 494, 738, 1161
PstI	CTGCAG	1 cut(s)	1134
PstNI	CAGNNNCTG	2 cut(s)	11, 964
PvuII	CAGCTG	4 cut(s)	11, 961, 1078, 1135
RsaI	GTAC	2 cut(s)	370, 421
RsaNI	GTAC	2 cut(s)	369, 420
RseI	CAYNNNNRTG	2 cut(s)	138, 903
SaqAI	TTAA	4 cut(s)	227, 302, 854, 1184
Sau3AI	GATC	6 cut(s)	157, 271, 727, 799, 877, 1242
Sau96I	GGNCC	4 cut(s)	248, 494, 738, 1161
ScaI	AGTACT	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	233, 287
SduI	GDGCHC	3 cut(s)	79, 133, 1044
SfaNI	GCATC	1 cut(s)	1079
SfcI	CTRYAG	1 cut(s)	1130
SinI	GGWCC	2 cut(s)	494, 1161
SmiMI	CAYNNNNRTG	2 cut(s)	138, 903
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	6 cut(s)	43, 260, 304, 721, 787, 1113
SseBI	AGGCCT	1 cut(s)	1025
SsiI	CCGC	5 cut(s)	946, 1208, 1221, 1224, 1292
SspMI	CTAG	3 cut(s)	216, 996, 1271
StuI	AGGCCT	1 cut(s)	1025
StyD4I	CCNGG	2 cut(s)	231, 285
StyI	CCWWGG	3 cut(s)	650, 687, 1157
TaaI	ACNGT	3 cut(s)	401, 424, 501
TaiI	ACGT	1 cut(s)	94
TasI	AATT	6 cut(s)	43, 260, 304, 721, 787, 1113
TatI	WGTACW	2 cut(s)	368, 419
TauI	GCSGC	2 cut(s)	1224, 1227
TfiI	GAWTC	3 cut(s)	119, 563, 581
Tru1I	TTAA	4 cut(s)	227, 302, 854, 1184
Tru9I	TTAA	4 cut(s)	227, 302, 854, 1184
TscAI	CASTG	2 cut(s)	356, 1100
TseFI	GTSAC	6 cut(s)	92, 430, 446, 702, 829, 863
TseI	GCWGC	8 cut(s)	5, 8, 31, 537, 914, 961, 1013, 1132
Tsp45I	GTSAC	6 cut(s)	92, 430, 446, 702, 829, 863
TspDTI	ATGAA	3 cut(s)	135, 541, 569
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	356, 1100
Van91I	CCANNNNNTGG	2 cut(s)	245, 628
VpaK11BI	GGWCC	2 cut(s)	494, 1161
XapI	RAATTY	2 cut(s)	260, 304
XspI	CTAG	3 cut(s)	216, 996, 1271
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.