Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040454.1

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 264

Gene Structure 263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040454.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 263 bp

atggcagcagccgaagcacggactggatggcagcatagagcgaattgttgtttttcccaagacaatgtgaggagtgctcaaagatttgcgcgtcacccgtcatcgtcttcctcaacagaatctgatagtgctcctgagaatgcttcgtatgggattgatcaccttatcccagattgcatgccctataactcaaatccggagctaacacccagcactaggtggtggttgaacctggaacctaactttgggcctcagaaggaatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.75

Weight (kDa)

5.5

Isoelectric Point (pI)

64.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	91
AccIII	TCCGGA	1 cut(s)	196
AdeI	CACNNNGTG	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	18, 216, 245
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	2 cut(s)	79, 133
AlwNI	CAGNNNCTG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	5, 8, 31
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	86, 152
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	79, 133
BbvI	GCAGC	3 cut(s)	17, 20, 43
BccI	CCATC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	157
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	6, 9, 32
BlsI	GCNGC	3 cut(s)	7, 10, 33
Bme1390I	CCNGG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 216, 245
Bse1I	ACTGG	1 cut(s)	28
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	3 cut(s)	18, 216, 245
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	3 cut(s)	17, 20, 43
BseYI	CCCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	79, 133
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	18, 216, 245
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	79, 133
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	135, 252
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	17, 20, 43
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	3 cut(s)	11, 202, 250
CviKI_1	RGCY	3 cut(s)	11, 202, 250
DdeI	CTNAG	2 cut(s)	135, 252
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	36, 150, 179, 186
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	6, 9, 32
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	6, 9, 32
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	6, 9, 32
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	86, 152
Hpy188I	TCNGA	2 cut(s)	124, 255
Hpy188III	TCNNGA	2 cut(s)	134, 197
HpyAV	CCTTC	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	135, 252
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	136, 199
LpnPI	CCDG	7 cut(s)	9, 147, 183, 210, 218, 223, 245
Lsp1109I	GCAGC	3 cut(s)	17, 20, 43
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	79, 133
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	3 cut(s)	63, 121, 261
MroI	TCCGGA	1 cut(s)	196
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	7, 10, 33
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	122
SatI	GCNGC	3 cut(s)	6, 9, 32
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	79, 133
SetI	ASST	5 cut(s)	165, 204, 221, 234, 241
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	231
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	3 cut(s)	5, 8, 31
Tsp45I	GTSAC	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	34
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.