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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46550 AT2G46550 AT2G46550 |
| fragaria_vesca | FvH4_7g16870 FvH4_7g31981 |
| malus_domestica | MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1 |
| prunus_persica | Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 |
| pyrus_communis | pycom01g23210 pycom07g15050 |
| rosa_chinensis | RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491 |
| rosa_laevigata | RLG00000026228 RLG00000027833 |
| rosa_multiflora | Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040 |
| rosa_roxburghii | Rroxscaffold_4G00278620 |
| rosa_rugosa | Rorug01G0275000 Rorug01G0275100 Rorug01G0428900 |
| rosa_samantha | Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700 |
| rosa_wichuraiana | Rw1G025620 Rw1G039470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 213 |
| Acc36I | ACCTGC | 2 cut(s) | 689, 1295 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 249, 661 |
| AccII | CGCG | 3 cut(s) | 122, 769, 1280 |
| AciI | CCGC | 7 cut(s) | 50, 278, 696, 767, 769, 1236, 1280 |
| AclWI | GGATC | 2 cut(s) | 521, 837 |
| AcsI | RAATTY | 4 cut(s) | 14, 128, 337, 952 |
| AdeI | CACNNNGTG | 1 cut(s) | 246 |
| AfaI | GTAC | 3 cut(s) | 403, 472, 569 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 249, 272, 273, 661, 1230 |
| AgsI | TTSAA | 7 cut(s) | 32, 256, 329, 337, 604, 743, 1084 |
| AjnI | CCWGG | 3 cut(s) | 258, 312, 453 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 118, 150 |
| AluBI | AGCT | 9 cut(s) | 304, 505, 615, 882, 982, 992, 1016, 1135, 1156 |
| AluI | AGCT | 9 cut(s) | 304, 505, 615, 882, 982, 992, 1016, 1135, 1156 |
| Alw21I | GWGCWC | 3 cut(s) | 64, 507, 617 |
| AlwI | GGATC | 2 cut(s) | 521, 837 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 170, 1120 |
| Ama87I | CYCGRG | 2 cut(s) | 553, 1136 |
| AoxI | GGCC | 4 cut(s) | 275, 770, 1089, 1221 |
| ApeKI | GCWGC | 7 cut(s) | 53, 76, 1034, 1120, 1129, 1132, 1153 |
| ApoI | RAATTY | 4 cut(s) | 14, 128, 337, 952 |
| AspLEI | GCGC | 4 cut(s) | 122, 124, 693, 1218 |
| AspS9I | GGNCC | 5 cut(s) | 275, 797, 1168, 1179, 1221 |
| AsuC2I | CCSGG | 1 cut(s) | 1300 |
| AsuNHI | GCTAGC | 1 cut(s) | 304 |
| AvaI | CYCGRG | 2 cut(s) | 553, 1136 |
| AvaII | GGWCC | 3 cut(s) | 797, 1168, 1179 |
| AxyI | CCTNAGG | 1 cut(s) | 774 |
| BanII | GRGCYC | 2 cut(s) | 507, 617 |
| BauI | CACGAG | 2 cut(s) | 905, 1011 |
| BbsI | GAAGAC | 2 cut(s) | 630, 966 |
| Bbv12I | GWGCWC | 3 cut(s) | 64, 507, 617 |
| BbvI | GCAGC | 7 cut(s) | 65, 88, 1046, 1107, 1116, 1144, 1165 |
| BccI | CCATC | 5 cut(s) | 28, 829, 1314, 1321, 1326 |
| BceAI | ACGGC | 1 cut(s) | 433 |
| BciT130I | CCWGG | 3 cut(s) | 260, 314, 455 |
| BclI | TGATCA | 1 cut(s) | 577 |
| BcnI | CCSGG | 1 cut(s) | 1300 |
| BfaI | CTAG | 3 cut(s) | 230, 305, 1017 |
| BfmI | CTRYAG | 2 cut(s) | 1130, 1151 |
| BfoI | RGCGCY | 1 cut(s) | 694 |
| BfuAI | ACCTGC | 2 cut(s) | 689, 1295 |
| Bme1390I | CCNGG | 4 cut(s) | 260, 314, 455, 1300 |
| Bme18I | GGWCC | 3 cut(s) | 797, 1168, 1179 |
| BmeT110I | CYCGRG | 2 cut(s) | 553, 1136 |
| BmgT120I | GGNCC | 5 cut(s) | 275, 797, 1168, 1179, 1221 |
| BmiI | GGNNCC | 5 cut(s) | 264, 624, 798, 799, 1181 |
| BmrFI | CCNGG | 4 cut(s) | 260, 314, 455, 1300 |
| BmrI | ACTGGG | 1 cut(s) | 649 |
| BmsI | GCATC | 2 cut(s) | 100, 793 |
| BmtI | GCTAGC | 1 cut(s) | 308 |
| BmuI | ACTGGG | 1 cut(s) | 649 |
| BpiI | GAAGAC | 2 cut(s) | 630, 966 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 1 cut(s) | 631 |
| BpuMI | CCSGG | 1 cut(s) | 1300 |
| BsaAI | YACGTR | 1 cut(s) | 294 |
| BsaBI | GATNNNNATC | 1 cut(s) | 579 |
| BsaJI | CCNNGG | 8 cut(s) | 683, 720, 767, 825, 1175, 1244, 1299, 1315 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 278, 308 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 249, 272, 273, 661, 1230 |
| Bse1I | ACTGG | 3 cut(s) | 382, 642, 655 |
| Bse21I | CCTNAGG | 1 cut(s) | 774 |
| Bse8I | GATNNNNATC | 1 cut(s) | 579 |
| BseBI | CCWGG | 3 cut(s) | 260, 314, 455 |
| BseDI | CCNNGG | 8 cut(s) | 683, 720, 767, 825, 1175, 1244, 1299, 1315 |
| BseGI | GGATG | 3 cut(s) | 937, 1325, 1337 |
| BseJI | GATNNNNATC | 1 cut(s) | 579 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 249, 272, 273, 661, 1230 |
| BseMII | CTCAG | 6 cut(s) | 174, 585, 609, 660, 743, 788 |
| BseNI | ACTGG | 3 cut(s) | 382, 642, 655 |
| BsePI | GCGCGC | 1 cut(s) | 120 |
| BseRI | GAGGAG | 1 cut(s) | 1304 |
| BseXI | GCAGC | 7 cut(s) | 65, 88, 1046, 1107, 1116, 1144, 1165 |
| Bsh1236I | CGCG | 3 cut(s) | 122, 769, 1280 |
| BshFI | GGCC | 4 cut(s) | 277, 772, 1091, 1223 |
| BsiHKAI | GWGCWC | 3 cut(s) | 64, 507, 617 |
| BsiHKCI | CYCGRG | 2 cut(s) | 553, 1136 |
| BsiSI | CCGG | 2 cut(s) | 1224, 1299 |
| BslFI | GGGAC | 2 cut(s) | 783, 1165 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 249, 272, 273, 661, 1230 |
| BsmFI | GGGAC | 2 cut(s) | 783, 1165 |
| BsmI | GAATGC | 2 cut(s) | 501, 1274 |
| BsnI | GGCC | 4 cut(s) | 277, 772, 1091, 1223 |
| BsoBI | CYCGRG | 2 cut(s) | 553, 1136 |
| Bsp1286I | GDGCHC | 3 cut(s) | 64, 507, 617 |
| Bsp1407I | TGTACA | 1 cut(s) | 470 |
| Bsp143I | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| Bsp19I | CCATGG | 2 cut(s) | 825, 1175 |
| BspACI | CCGC | 7 cut(s) | 50, 278, 696, 767, 769, 1236, 1280 |
| BspANI | GGCC | 4 cut(s) | 277, 772, 1091, 1223 |
| BspCNI | CTCAG | 6 cut(s) | 175, 584, 610, 661, 742, 787 |
| BspFNI | CGCG | 3 cut(s) | 122, 769, 1280 |
| BspHI | TCATGA | 1 cut(s) | 585 |
| BspLI | GGNNCC | 5 cut(s) | 264, 624, 798, 799, 1181 |
| BspMAI | CTGCAG | 2 cut(s) | 1134, 1155 |
| BspMI | ACCTGC | 2 cut(s) | 689, 1295 |
| BspOI | GCTAGC | 1 cut(s) | 308 |
| BspPI | GGATC | 2 cut(s) | 521, 837 |
| BsrGI | TGTACA | 1 cut(s) | 470 |
| BsrI | ACTGG | 3 cut(s) | 382, 642, 655 |
| BssECI | CCNNGG | 8 cut(s) | 683, 720, 767, 825, 1175, 1244, 1299, 1315 |
| BssHII | GCGCGC | 1 cut(s) | 120 |
| BssMI | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| BssSI | CACGAG | 2 cut(s) | 905, 1011 |
| BssT1I | CCWWGG | 4 cut(s) | 720, 825, 1175, 1244 |
| Bst2BI | CACGAG | 2 cut(s) | 905, 1011 |
| Bst2UI | CCWGG | 3 cut(s) | 260, 314, 455 |
| Bst4CI | ACNGT | 4 cut(s) | 92, 272, 684, 1348 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1120, 1129 |
| BstAUI | TGTACA | 1 cut(s) | 470 |
| BstBAI | YACGTR | 1 cut(s) | 294 |
| BstC8I | GCNNGC | 8 cut(s) | 64, 122, 206, 306, 1044, 1089, 1151, 1196 |
| BstDEI | CTNAG | 7 cut(s) | 183, 540, 571, 618, 669, 729, 774 |
| BstDSI | CCRYGG | 4 cut(s) | 683, 767, 825, 1175 |
| BstF5I | GGATG | 3 cut(s) | 937, 1325, 1337 |
| BstFNI | CGCG | 3 cut(s) | 122, 769, 1280 |
| BstH2I | RGCGCY | 1 cut(s) | 694 |
| BstHHI | GCGC | 4 cut(s) | 122, 124, 693, 1218 |
| BstKTI | GATC | 5 cut(s) | 366, 529, 580, 763, 832 |
| BstMBI | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 59, 119, 1022, 1031, 1043, 1093, 1120, 1126, 1129 |
| BstNI | CCWGG | 3 cut(s) | 260, 314, 455 |
| BstNSI | RCATGY | 1 cut(s) | 208 |
| BstSCI | CCNGG | 4 cut(s) | 258, 312, 453, 1298 |
| BstSFI | CTRYAG | 2 cut(s) | 1130, 1151 |
| BstSNI | TACGTA | 1 cut(s) | 294 |
| BstUI | CGCG | 3 cut(s) | 122, 769, 1280 |
| BstV1I | GCAGC | 7 cut(s) | 65, 88, 1046, 1107, 1116, 1144, 1165 |
| BstV2I | GAAGAC | 2 cut(s) | 630, 966 |
| Bsu36I | CCTNAGG | 1 cut(s) | 774 |
| BsuRI | GGCC | 4 cut(s) | 277, 772, 1091, 1223 |
| BtgI | CCRYGG | 4 cut(s) | 683, 767, 825, 1175 |
| BtsCI | GGATG | 3 cut(s) | 937, 1325, 1337 |
| BtsI | GCAGTG | 1 cut(s) | 1121 |
| BtsIMutI | CAGTG | 2 cut(s) | 662, 1121 |
| BveI | ACCTGC | 2 cut(s) | 689, 1295 |
| Cac8I | GCNNGC | 8 cut(s) | 64, 122, 206, 306, 1044, 1089, 1151, 1196 |
| CaiI | CAGNNNCTG | 2 cut(s) | 170, 1120 |
| CciI | TCATGA | 1 cut(s) | 585 |
| CfoI | GCGC | 4 cut(s) | 122, 124, 693, 1218 |
| Cfr13I | GGNCC | 5 cut(s) | 275, 797, 1168, 1179, 1221 |
| Cfr42I | CCGCGG | 1 cut(s) | 770 |
| Csp6I | GTAC | 3 cut(s) | 402, 471, 568 |
| CviAII | CATG | 7 cut(s) | 72, 205, 586, 826, 873, 1176, 1201 |
| CviQI | GTAC | 3 cut(s) | 402, 471, 568 |
| DdeI | CTNAG | 7 cut(s) | 183, 540, 571, 618, 669, 729, 774 |
| DpnI | GATC | 5 cut(s) | 365, 528, 579, 762, 831 |
| DpnII | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| DraIII | CACNNNGTG | 1 cut(s) | 246 |
| Ecl136II | GAGCTC | 2 cut(s) | 505, 615 |
| Eco105I | TACGTA | 1 cut(s) | 294 |
| Eco130I | CCWWGG | 4 cut(s) | 720, 825, 1175, 1244 |
| Eco147I | AGGCCT | 1 cut(s) | 1091 |
| Eco24I | GRGCYC | 2 cut(s) | 507, 617 |
| Eco47I | GGWCC | 3 cut(s) | 797, 1168, 1179 |
| Eco53kI | GAGCTC | 2 cut(s) | 505, 615 |
| Eco81I | CCTNAGG | 1 cut(s) | 774 |
| Eco88I | CYCGRG | 2 cut(s) | 553, 1136 |
| EcoICRI | GAGCTC | 2 cut(s) | 505, 615 |
| EcoO109I | RGGNCCY | 1 cut(s) | 797 |
| EcoRI | GAATTC | 3 cut(s) | 14, 337, 952 |
| EcoRII | CCWGG | 3 cut(s) | 258, 312, 453 |
| EcoT14I | CCWWGG | 4 cut(s) | 720, 825, 1175, 1244 |
| EcoT38I | GRGCYC | 2 cut(s) | 507, 617 |
| ErhI | CCWWGG | 4 cut(s) | 720, 825, 1175, 1244 |
| FaeI | CATG | 7 cut(s) | 75, 208, 589, 829, 876, 1179, 1204 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 871, 903 |
| FaqI | GGGAC | 2 cut(s) | 783, 1165 |
| FatI | CATG | 7 cut(s) | 71, 204, 585, 825, 872, 1175, 1200 |
| FauI | CCCGC | 1 cut(s) | 774 |
| FbaI | TGATCA | 1 cut(s) | 577 |
| FokI | GGATG | 3 cut(s) | 944, 1332, 1344 |
| FriOI | GRGCYC | 2 cut(s) | 507, 617 |
| FspBI | CTAG | 3 cut(s) | 230, 305, 1017 |
| GlaI | GCGC | 4 cut(s) | 121, 123, 692, 1217 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeII | RGCGCY | 1 cut(s) | 694 |
| HaeIII | GGCC | 4 cut(s) | 277, 772, 1091, 1223 |
| HapII | CCGG | 2 cut(s) | 1224, 1299 |
| HhaI | GCGC | 4 cut(s) | 122, 124, 693, 1218 |
| Hin1II | CATG | 7 cut(s) | 75, 208, 589, 829, 876, 1179, 1204 |
| Hin6I | GCGC | 4 cut(s) | 120, 122, 691, 1216 |
| HinP1I | GCGC | 4 cut(s) | 120, 122, 691, 1216 |
| HindIII | AAGCTT | 2 cut(s) | 880, 990 |
| HinfI | GANTC | 6 cut(s) | 167, 345, 551, 596, 650, 908 |
| HpaII | CCGG | 2 cut(s) | 1224, 1299 |
| Hpy166II | GTNNAC | 1 cut(s) | 291 |
| Hpy188I | TCNGA | 8 cut(s) | 172, 363, 574, 619, 732, 834, 958, 1319 |
| Hpy188III | TCNNGA | 5 cut(s) | 11, 224, 342, 586, 1138 |
| Hpy8I | GTNNAC | 1 cut(s) | 291 |
| Hpy99I | CGWCG | 1 cut(s) | 148 |
| HpyAV | CCTTC | 4 cut(s) | 277, 787, 1051, 1201 |
| HpyCH4III | ACNGT | 4 cut(s) | 92, 272, 684, 1348 |
| HpyCH4IV | ACGT | 1 cut(s) | 293 |
| HpyCH4V | TGCA | 8 cut(s) | 179, 204, 499, 915, 1123, 1132, 1153, 1274 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 59, 119, 1022, 1031, 1043, 1093, 1120, 1126, 1129 |
| HpyF3I | CTNAG | 7 cut(s) | 183, 540, 571, 618, 669, 729, 774 |
| HpySE526I | ACGT | 1 cut(s) | 293 |
| Hsp92II | CATG | 7 cut(s) | 75, 208, 589, 829, 876, 1179, 1204 |
| HspAI | GCGC | 4 cut(s) | 120, 122, 691, 1216 |
| KflI | GGGWCCC | 1 cut(s) | 797 |
| Ksp22I | TGATCA | 1 cut(s) | 577 |
| KspI | CCGCGG | 1 cut(s) | 770 |
| Kzo9I | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| LmnI | GCTCC | 4 cut(s) | 59, 117, 698, 1317 |
| Lsp1109I | GCAGC | 7 cut(s) | 65, 88, 1046, 1107, 1116, 1144, 1165 |
| LweI | GCATC | 2 cut(s) | 100, 793 |
| MaeI | CTAG | 3 cut(s) | 230, 305, 1017 |
| MaeII | ACGT | 1 cut(s) | 293 |
| MaeIII | GTNAC | 6 cut(s) | 371, 463, 479, 735, 893, 1184 |
| MalI | GATC | 5 cut(s) | 365, 528, 579, 762, 831 |
| MboI | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| MboII | GAAGA | 8 cut(s) | 44, 119, 126, 144, 430, 630, 971, 1216 |
| MfeI | CAATTG | 1 cut(s) | 1124 |
| MhlI | GDGCHC | 3 cut(s) | 64, 507, 617 |
| MlyI | GAGTC | 2 cut(s) | 545, 917 |
| MmeI | TCCRAC | 2 cut(s) | 411, 966 |
| MnlI | CCTC | 9 cut(s) | 166, 200, 310, 613, 783, 811, 928, 1102, 1325 |
| MseI | TTAA | 3 cut(s) | 780, 923, 1257 |
| MspA1I | CMGCKG | 1 cut(s) | 769 |
| MspI | CCGG | 2 cut(s) | 1224, 1299 |
| MspR9I | CCNGG | 4 cut(s) | 260, 314, 455, 1300 |
| MunI | CAATTG | 1 cut(s) | 1124 |
| Mva1269I | GAATGC | 2 cut(s) | 501, 1274 |
| MvaI | CCWGG | 3 cut(s) | 260, 314, 455 |
| MvnI | CGCG | 3 cut(s) | 122, 769, 1280 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 59, 119, 1022, 1031, 1043, 1093, 1120, 1126, 1129 |
| NciI | CCSGG | 1 cut(s) | 1300 |
| NcoI | CCATGG | 2 cut(s) | 825, 1175 |
| NdeII | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| NheI | GCTAGC | 1 cut(s) | 304 |
| NlaIII | CATG | 7 cut(s) | 75, 208, 589, 829, 876, 1179, 1204 |
| NlaIV | GGNNCC | 5 cut(s) | 264, 624, 798, 799, 1181 |
| NmeAIII | GCCGAG | 1 cut(s) | 1003 |
| NmuCI | GTSAC | 6 cut(s) | 371, 463, 479, 735, 893, 1184 |
| NspI | RCATGY | 1 cut(s) | 208 |
| PaeI | GCATGC | 1 cut(s) | 208 |
| PaeR7I | CTCGAG | 1 cut(s) | 1136 |
| PagI | TCATGA | 1 cut(s) | 585 |
| PauI | GCGCGC | 1 cut(s) | 120 |
| PceI | AGGCCT | 1 cut(s) | 1091 |
| PctI | GAATGC | 2 cut(s) | 501, 1274 |
| PfeI | GAWTC | 4 cut(s) | 167, 345, 596, 650 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 249, 661 |
| PfoI | TCCNGGA | 1 cut(s) | 312 |
| PleI | GAGTC | 2 cut(s) | 545, 916 |
| PpsI | GAGTC | 2 cut(s) | 545, 916 |
| Ppu21I | YACGTR | 1 cut(s) | 294 |
| PpuMI | RGGWCCY | 1 cut(s) | 797 |
| PsiI | TTATAA | 1 cut(s) | 213 |
| Psp124BI | GAGCTC | 2 cut(s) | 507, 617 |
| Psp5II | RGGWCCY | 1 cut(s) | 797 |
| Psp6I | CCWGG | 3 cut(s) | 258, 312, 453 |
| PspGI | CCWGG | 3 cut(s) | 258, 312, 453 |
| PspN4I | GGNNCC | 5 cut(s) | 264, 624, 798, 799, 1181 |
| PspPI | GGNCC | 5 cut(s) | 275, 797, 1168, 1179, 1221 |
| PspPPI | RGGWCCY | 1 cut(s) | 797 |
| PstI | CTGCAG | 2 cut(s) | 1134, 1155 |
| PstNI | CAGNNNCTG | 2 cut(s) | 170, 1120 |
| PteI | GCGCGC | 1 cut(s) | 120 |
| RsaI | GTAC | 3 cut(s) | 403, 472, 569 |
| RsaNI | GTAC | 3 cut(s) | 402, 471, 568 |
| SacI | GAGCTC | 2 cut(s) | 507, 617 |
| SacII | CCGCGG | 1 cut(s) | 770 |
| SaqAI | TTAA | 3 cut(s) | 780, 923, 1257 |
| Sau3AI | GATC | 5 cut(s) | 363, 526, 577, 760, 829 |
| Sau96I | GGNCC | 5 cut(s) | 275, 797, 1168, 1179, 1221 |
| SchI | GAGTC | 2 cut(s) | 545, 917 |
| ScrFI | CCNGG | 4 cut(s) | 260, 314, 455, 1300 |
| SduI | GDGCHC | 3 cut(s) | 64, 507, 617 |
| SfaNI | GCATC | 2 cut(s) | 100, 793 |
| SfcI | CTRYAG | 2 cut(s) | 1130, 1151 |
| Sfr274I | CTCGAG | 1 cut(s) | 1136 |
| Sfr303I | CCGCGG | 1 cut(s) | 770 |
| SgrBI | CCGCGG | 1 cut(s) | 770 |
| SinI | GGWCC | 3 cut(s) | 797, 1168, 1179 |
| SlaI | CTCGAG | 1 cut(s) | 1136 |
| SmlI | CTYRAG | 2 cut(s) | 610, 1136 |
| SmoI | CTYRAG | 2 cut(s) | 610, 1136 |
| SnaBI | TACGTA | 1 cut(s) | 294 |
| SphI | GCATGC | 1 cut(s) | 208 |
| SseBI | AGGCCT | 1 cut(s) | 1091 |
| SsiI | CCGC | 7 cut(s) | 50, 278, 696, 767, 769, 1236, 1280 |
| SspMI | CTAG | 3 cut(s) | 230, 305, 1017 |
| SstI | GAGCTC | 2 cut(s) | 507, 617 |
| StuI | AGGCCT | 1 cut(s) | 1091 |
| StyD4I | CCNGG | 4 cut(s) | 258, 312, 453, 1298 |
| StyI | CCWWGG | 4 cut(s) | 720, 825, 1175, 1244 |
| TaaI | ACNGT | 4 cut(s) | 92, 272, 684, 1348 |
| TaiI | ACGT | 1 cut(s) | 296 |
| TaqI | TCGA | 3 cut(s) | 810, 967, 1137 |
| TatI | WGTACW | 1 cut(s) | 470 |
| TauI | GCSGC | 4 cut(s) | 53, 280, 772, 1239 |
| TfiI | GAWTC | 4 cut(s) | 167, 345, 596, 650 |
| Tru1I | TTAA | 3 cut(s) | 780, 923, 1257 |
| Tru9I | TTAA | 3 cut(s) | 780, 923, 1257 |
| TscAI | CASTG | 2 cut(s) | 662, 1121 |
| TseFI | GTSAC | 6 cut(s) | 371, 463, 479, 735, 893, 1184 |
| TseI | GCWGC | 7 cut(s) | 53, 76, 1034, 1120, 1129, 1132, 1153 |
| Tsp45I | GTSAC | 6 cut(s) | 371, 463, 479, 735, 893, 1184 |
| TspDTI | ATGAA | 5 cut(s) | 312, 341, 431, 602, 1217 |
| TspRI | CASTG | 2 cut(s) | 662, 1121 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 249, 661 |
| VpaK11BI | GGWCC | 3 cut(s) | 797, 1168, 1179 |
| XapI | RAATTY | 4 cut(s) | 14, 128, 337, 952 |
| XceI | RCATGY | 1 cut(s) | 208 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 394, 832 |
| XhoI | CTCGAG | 1 cut(s) | 1136 |
| XspI | CTAG | 3 cut(s) | 230, 305, 1017 |