Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Reverse (-)

19554724 .. 19556126

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCCACCGGAGATGGGAAATCGGTGATGGTCGTCGGAGTTGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACGCTCGATCGTTTCTTCGCTCCTTACGCTCCCAATTATCCTTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGCCGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGCTGATCTGAAGCATACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAGATCGGTTCATGGCGCGGTGATCGAAGTTTTCGAAGGTGATGCAAGGAATATCCTATGTGAAGTTGTAGATAAGCATCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTATCAAGAGGGCGGTTCTCGGGAGTACGAGTGACTACTGCGCTCATCATGCTCATTGCTCGGTGATGATCGTGAAGAAGCCTAAGATCAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.3

Weight (kDa)

7.74

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	10 - 156	3.4e-25	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AciI	CCGC	5 cut(s)	162, 191, 231, 290, 404
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	2 cut(s)	201, 418
AfiI	CCNNNNNNNGG	2 cut(s)	15, 75
AluBI	AGCT	2 cut(s)	127, 392
AluI	AGCT	2 cut(s)	127, 392
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	163, 176
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	290, 434
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	4 cut(s)	37, 304, 323, 466
AsuII	TTCGAA	1 cut(s)	306
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	8, 22
BceAI	ACGGC	2 cut(s)	140, 149
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	163, 176
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	3 cut(s)	202, 304, 358
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	183
BsaBI	GATNNNNATC	2 cut(s)	216, 348
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	69, 379
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 406, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 75
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	2 cut(s)	216, 348
BseDI	CCNNGG	2 cut(s)	69, 379
BseJI	GATNNNNATC	2 cut(s)	216, 348
BseLI	CCNNNNNNNGG	2 cut(s)	15, 75
BseMI	GCAATG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	9, 183
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	15, 75
BsmAI	GTCTC	2 cut(s)	163, 176
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	5 cut(s)	162, 191, 231, 290, 404
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	69, 379
BssMI	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
BssT1I	CCWWGG	2 cut(s)	69, 379
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	237, 474
BstDSI	CCRYGG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	290, 434
BstKTI	GATC	6 cut(s)	88, 220, 278, 297, 462, 480
BstMAI	GTCTC	2 cut(s)	163, 176
BstMBI	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 104, 161, 440
BstSCI	CCNGG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	2 cut(s)	290, 434
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	200, 417
CviAII	CATG	4 cut(s)	284, 353, 380, 440
CviJI	RGCY	6 cut(s)	5, 127, 254, 378, 392, 472
CviKI_1	RGCY	6 cut(s)	5, 127, 254, 378, 392, 472
CviQI	GTAC	2 cut(s)	200, 417
DdeI	CTNAG	2 cut(s)	237, 474
DpnI	GATC	6 cut(s)	87, 219, 277, 296, 461, 479
DpnII	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	69, 379
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	69, 379
ErhI	CCWWGG	2 cut(s)	69, 379
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	4 cut(s)	287, 356, 383, 443
FaiI	YATR	8 cut(s)	207, 228, 285, 331, 354, 381, 387, 441
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	4 cut(s)	283, 352, 379, 439
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
GlaI	GCGC	2 cut(s)	289, 433
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	9, 183
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	290, 434
Hin1II	CATG	4 cut(s)	287, 356, 383, 443
Hin6I	GCGC	2 cut(s)	288, 432
HinP1I	GCGC	2 cut(s)	288, 432
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	9, 183
HphI	GGTGA	4 cut(s)	37, 304, 323, 466
Hpy166II	GTNNAC	3 cut(s)	43, 78, 139
Hpy188I	TCNGA	4 cut(s)	38, 222, 270, 488
Hpy188III	TCNNGA	4 cut(s)	247, 397, 412, 463
Hpy8I	GTNNAC	3 cut(s)	43, 78, 139
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 104, 161, 440
HpyF3I	CTNAG	2 cut(s)	237, 474
Hsp92II	CATG	4 cut(s)	287, 356, 383, 443
HspAI	GCGC	2 cut(s)	288, 432
Kzo9I	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	3 cut(s)	103, 112, 389
LpnPI	CCDG	3 cut(s)	22, 162, 196
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	202, 304, 358
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	6 cut(s)	87, 219, 277, 296, 461, 479
MboI	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
MboII	GAAGA	3 cut(s)	85, 121, 478
MhlI	GDGCHC	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	112, 261
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	187, 393
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	9, 183
MspR9I	CCNGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	57, 104, 161, 440
NciI	CCSGG	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
NlaIII	CATG	4 cut(s)	287, 356, 383, 443
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	422
NspV	TTCGAA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 303
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	235
Ple19I	CGATCG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	201, 418
RsaNI	GTAC	2 cut(s)	200, 417
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	85, 217, 275, 294, 459, 477
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	8 cut(s)	129, 151, 198, 205, 243, 313, 394, 486
SfaNI	GCATC	3 cut(s)	202, 304, 358
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	2 cut(s)	112, 261
SsiI	CCGC	5 cut(s)	162, 191, 231, 290, 404
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	69, 379
TaqI	TCGA	4 cut(s)	84, 246, 297, 306
TasI	AATT	2 cut(s)	112, 261
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	121, 272
VpaK11BI	GGWCC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.