RLG00000011918

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003052
Physical Location & Seq
Reverse (-)
13770073 .. 13771432
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011918

Sequence Viewer

Length: 480 bp
ATGGCAGAGAAGCAAGTGATGGTTGTGGCGGCCGACGAGAGCGAGCACAGCGCCTACGCTCTGGAGTGGACTTTGGAACACTTCTTCACCCCGTTCGGCCCCAACACGCCCTTCAAGCTCGTCATCATCCACGCCAAGCCCATGCCTTCCTCTGTCGTCGGCCTCGCCGGTCCCAGCGCGGCGGAGGTTCTACCGATTGTGGATGCTGATTTGAAGAGGCAGGCTTCCCGCGTTAGTGAGAAGGCCAAGGAATTTTGTGCTTCTAAATCGGTAAAAGATGTGGCCGTAGAGGTGATAGAAGGCGATGCTAGGAATGTTCTCTGTGAGGCTGTGGAAAGACACCATGCAGCCGTCTTGGTTTTGGGTAGTCATGGCTATGGAGCCATCAAAAGGGCGGTTTTGGGAAGTGTAAGTGACTATTGTGCTCATCACGCTCACTGCAGTGTTATGATCGTGAAGAGGCCTAAAGCCAAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

160

Amino Acids

17.13

Weight (kDa)

7.15

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 153 4.6e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 179, 231
AciI CCGC 5 cut(s) 29, 179, 182, 229, 395
AcoI YGGCCR 2 cut(s) 30, 282
AcsI RAATTY 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 2 cut(s) 115, 214
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AleI CACNNNNGTG 1 cut(s) 441
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 2 cut(s) 48, 427
AoxI GGCC 6 cut(s) 30, 97, 160, 243, 282, 461
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 53, 179
AspS9I GGNCC 2 cut(s) 98, 170
AsuHPI GGTGA 2 cut(s) 79, 304
AvaII GGWCC 1 cut(s) 170
Bbv12I GWGCWC 2 cut(s) 48, 427
BbvI GCAGC 1 cut(s) 359
BccI CCATC 2 cut(s) 13, 392
BceAI ACGGC 2 cut(s) 269, 335
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 439
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 3 cut(s) 30, 180, 348
BlsI GCNGC 3 cut(s) 31, 181, 349
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 98, 170
BmiI GGNNCC 3 cut(s) 100, 172, 382
BmsI GCATC 2 cut(s) 193, 295
BpmI CTGGAG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 126, 208
BseLI CCNNNNNNNGG 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 359
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 179, 231
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 6 cut(s) 32, 99, 162, 245, 284, 463
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 48, 427
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 6 cut(s) 32, 99, 162, 245, 284, 463
Bsp1286I GDGCHC 2 cut(s) 48, 427
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 5 cut(s) 29, 179, 182, 229, 395
BspANI GGCC 6 cut(s) 32, 99, 162, 245, 284, 463
BspFNI CGCG 2 cut(s) 179, 231
BspLI GGNNCC 3 cut(s) 100, 172, 382
BspMAI CTGCAG 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 209, 452
BstC8I GCNNGC 2 cut(s) 44, 222
BstF5I GGATG 2 cut(s) 126, 208
BstFNI CGCG 2 cut(s) 179, 231
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 179
BstKTI GATC 1 cut(s) 453
BstMBI GATC 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 48, 115, 431
BstSFI CTRYAG 1 cut(s) 439
BstUI CGCG 2 cut(s) 179, 231
BstV1I GCAGC 1 cut(s) 359
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 6 cut(s) 32, 99, 162, 245, 284, 463
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 126, 208
BtsI GCAGTG 2 cut(s) 436, 448
BtsIMutI CAGTG 2 cut(s) 436, 448
Cac8I GCNNGC 2 cut(s) 44, 222
CfoI GCGC 2 cut(s) 53, 179
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 98, 170
CviAII CATG 3 cut(s) 142, 344, 371
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
EaeI YGGCCR 2 cut(s) 30, 282
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 209, 452
EarI CTCTTC 2 cut(s) 209, 452
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 145, 347, 374
FaiI YATR 5 cut(s) 143, 345, 372, 378, 449
FaqI GGGAC 1 cut(s) 156
FatI CATG 3 cut(s) 141, 343, 370
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 30, 180, 348
FokI GGATG 2 cut(s) 113, 215
Fsp4HI GCNGC 3 cut(s) 30, 180, 348
FspBI CTAG 1 cut(s) 309
GlaI GCGC 2 cut(s) 52, 178
GluI GCNGC 3 cut(s) 30, 180, 348
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 6 cut(s) 32, 99, 162, 245, 284, 463
HapII CCGG 1 cut(s) 168
HhaI GCGC 2 cut(s) 53, 179
Hin1II CATG 3 cut(s) 145, 347, 374
Hin6I GCGC 2 cut(s) 51, 177
HinP1I GCGC 2 cut(s) 51, 177
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 79, 304
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 62, 454
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 2 cut(s) 38, 161
HpyAV CCTTC 4 cut(s) 121, 156, 235, 293
HpyCH4V TGCA 2 cut(s) 347, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 115, 431
Hsp92II CATG 3 cut(s) 145, 347, 374
HspAI GCGC 2 cut(s) 51, 177
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 4 cut(s) 47, 181, 187, 206
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 2 cut(s) 193, 295
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 413
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 3 cut(s) 76, 226, 469
MhlI GDGCHC 2 cut(s) 48, 427
MluCI AATT 1 cut(s) 251
MnlI CCTC 7 cut(s) 160, 173, 178, 210, 283, 319, 453
MslI CAYNNNNRTG 2 cut(s) 375, 441
MspI CCGG 1 cut(s) 168
MvnI CGCG 2 cut(s) 179, 231
MwoI GCNNNNNNNGC 3 cut(s) 48, 115, 431
NdeII GATC 1 cut(s) 450
NlaIII CATG 3 cut(s) 145, 347, 374
NlaIV GGNNCC 3 cut(s) 100, 172, 382
NmuCI GTSAC 1 cut(s) 413
OliI CACNNNNGTG 1 cut(s) 441
PceI AGGCCT 1 cut(s) 463
PkrI GCNGC 3 cut(s) 31, 181, 349
PspFI CCCAGC 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 100, 172, 382
PspPI GGNCC 2 cut(s) 98, 170
PstI CTGCAG 1 cut(s) 443
RseI CAYNNNNRTG 2 cut(s) 375, 441
SatI GCNGC 3 cut(s) 30, 180, 348
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 98, 170
SduI GDGCHC 2 cut(s) 48, 427
SetI ASST 3 cut(s) 120, 189, 294
SfaNI GCATC 2 cut(s) 193, 295
SfcI CTRYAG 1 cut(s) 439
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 375, 441
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 5 cut(s) 29, 179, 182, 229, 395
SspMI CTAG 1 cut(s) 309
StuI AGGCCT 1 cut(s) 463
StyI CCWWGG 1 cut(s) 246
TasI AATT 1 cut(s) 251
TauI GCSGC 2 cut(s) 32, 182
TscAI CASTG 2 cut(s) 443, 448
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 413
TspRI CASTG 2 cut(s) 443, 448
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 251
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.