Rw0G009250

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00362
OG0003052
Physical Location & Seq
Forward (+)
27 .. 362
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009250.1

Sequence Viewer

Length: 222 bp
ATGCAGGTGGAAATTGTGCTAGTGGAAGTTATGGAAGGTGATCCGAGAAATGTTATGCCCGAAGCTGTGGATAAACACAAAGCAGTTCTCTTGGTTCTCGGCAGTCATGGTTATGGAGCGGTAAAGAGGGCAGTTCTGGGGAGTGTAAGCGACTTCTGTGCTCATCATGCTAACTGTTCAGTGATGATTGTGAAGAGGCCAACCAAGCCTGCTGCCAAGTAG

Protein Analysis

73

Amino Acids

7.84

Weight (kDa)

8.71

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 65 1.7e-16 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 119
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 35
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 163
AlwI GGATC 1 cut(s) 35
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BfaI CTAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 163
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 119
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 167, 205
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 210
CviAII CATG 2 cut(s) 107, 167
CviJI RGCY 3 cut(s) 65, 199, 208
CviKI_1 RGCY 3 cut(s) 65, 199, 208
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
FaeI CATG 2 cut(s) 110, 170
FaiI YATR 5 cut(s) 32, 56, 108, 114, 168
FatI CATG 2 cut(s) 106, 166
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 2 cut(s) 110, 170
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 205
Hsp92II CATG 2 cut(s) 110, 170
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 42
MbiI CCGCTC 1 cut(s) 119
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 12
MnlI CCTC 2 cut(s) 120, 189
MslI CAYNNNNRTG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 167, 205
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 110, 170
NmeAIII GCCGAG 1 cut(s) 78
PkrI GCNGC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 40
SduI GDGCHC 1 cut(s) 163
SetI ASST 3 cut(s) 9, 40, 67
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 176
TasI AATT 1 cut(s) 12
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 212
TspRI CASTG 1 cut(s) 186
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.