Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Reverse (-)

10653870 .. 10655167

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGGAAGGTAGTGAGAACAAGGGGAAGCCGCTGATGCTAGTTGCAGTGGACGACAGTGAGCATAGCTTTTATGCATTGGAGTGGACGTTGGACCATTTCTTTGCTCACGGCACCAACCACCCTTTCAAGCTCATCGTCATTCATGCTAGGAGTTCTGCCTCTTCTGCCCTCGGCGTCGCCGGATTTGGTTCTGTGGACTTTATGACTTCTTTGGAGGCGGATATGAAGAAATCCACTGGTAAGACCGTGCAGAAAGCTAAGGATGTTTGCACCAGCAAAAAGGTGGAAAATGTAGAAGTGGAAGTAATGGAAGGTGATCCCAGAAATGTTATGTGTGACGCTGTTGATAAACATCAGGCCTCCCTTTTGGTTGTTGGAAGTCATGGTTATGGAATTGTAAAGAGGGCAGTTCTTGGAAGTGTAAGCGACTACTGTGCTCATCATGTTAAATGCTCCGTCATGATTGTGAAGCAACCCACAAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

164

Amino Acids

17.62

Weight (kDa)

6.74

Isoelectric Point (pI)

13.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	3 cut(s)	5, 32, 221
AclWI	GGATC	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	69, 133, 260
AluI	AGCT	3 cut(s)	69, 133, 260
Alw21I	GWGCWC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BfaI	CTAG	2 cut(s)	41, 150
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	3 cut(s)	5, 32, 221
BspANI	GGCC	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	59, 250, 437
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 167
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 64, 237
CciI	TCATGA	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	2 cut(s)	166, 350
CviAII	CATG	4 cut(s)	146, 386, 446, 463
CviJI	RGCY	6 cut(s)	31, 69, 133, 260, 362, 487
CviKI_1	RGCY	6 cut(s)	31, 69, 133, 260, 362, 487
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	2 cut(s)	20, 236
Eco147I	AGGCCT	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	4 cut(s)	149, 389, 449, 466
FatI	CATG	4 cut(s)	145, 385, 445, 462
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	2 cut(s)	41, 150
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	166, 350
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	149, 389, 449, 466
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	3 cut(s)	52, 87, 199
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	3 cut(s)	52, 87, 199
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	59, 250, 437
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	47, 77, 253, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 167
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	149, 389, 449, 466
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	5 cut(s)	196, 225, 289, 337, 344
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	41, 150
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	156, 241
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	1 cut(s)	396
MmeI	TCCRAC	2 cut(s)	72, 358
MnlI	CCTC	5 cut(s)	172, 182, 211, 373, 399
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	3 cut(s)	82, 390, 467
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	37, 167
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	4 cut(s)	149, 389, 449, 466
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	79
PagI	TCATGA	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	94
RseI	CAYNNNNRTG	3 cut(s)	82, 390, 467
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	7 cut(s)	13, 71, 92, 135, 262, 288, 319
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	3 cut(s)	82, 390, 467
Sse9I	AATT	1 cut(s)	396
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	3 cut(s)	5, 32, 221
SspMI	CTAG	2 cut(s)	41, 150
StuI	AGGCCT	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	59, 250, 437
TaiI	ACGT	1 cut(s)	92
TasI	AATT	1 cut(s)	396
TauI	GCSGC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	3 cut(s)	54, 64, 244
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	134, 242
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	3 cut(s)	54, 64, 244
VpaK11BI	GGWCC	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	41, 150
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.