Rroxscaffold_7G00173860

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003052
Physical Location & Seq
Reverse (-)
13719591 .. 13723384
3794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173860.1

Sequence Viewer

Length: 714 bp
ATGGCAGAGAAGCAAGTGATGGTTGTGGCGGCCGACGAGAGCGAGCACAGCGCCTACGCTCTGGAGTGGACTCTGGAACACTTCTTCACCCCGTTCGGCCCCAACACGCCGTTCAAGCTCGTCATCGTCCACGCCAAGCCCATGCCTTCCTCTGTCGTCGGCCTCGCCGGTCCCGGCGCGGCGGAGGTTCTGCCGATTGTGGATGCTGATTTGAAGAGGCAGGCTGCCCGCGTTAGTGAGAACGCCAGGGAATTTTGTGCTTCTAAATCGATAAAAGATGTGGCCGTAGAGGTGATAGAAGGCGATGCCAGGAATGTACTCTGTGATGCTGTGGAAAGACACCATGCATCCGTCTTGGTTCTGGGTAGTCATGGCTATGGAGCCATCAAAAGGTATTCGTCACACCCTGTTCCAATGTCGCCGATTTTGAGAGGCGGTTTTGGGAAGTGGGGACCTGAAGTTTTGCCAACTCTGGAGGCAGACCTGAAGAAGATCGCTCTTCGAGTTGTAGACAAGGCCAAGAAAATTTGCGCCAGCAAGTTGGTGACTGATGTGGTAGTGGAAGTGGTTGCTGGGGGTGCTAGGGATGTTTTCTGTGAGGCTGTAGAGAGACACAAGGCATCCGTATTGGCTTCTGGTAGCCATGGCTATGGAGTTATCAAAAGAGCTGTTTTGGGTAGCGTAAGTGATTACTGTGCTCATCGTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

237

Amino Acids

25.32

Weight (kDa)

7.73

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 132 2.6e-12 Universal stress protein family
Usp PF00582 170 - 237 1.2e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 510
AccII CGCG 2 cut(s) 179, 231
AciI CCGC 5 cut(s) 29, 179, 182, 229, 435
AcoI YGGCCR 2 cut(s) 30, 282
AcsI RAATTY 2 cut(s) 251, 525
AcuI CTGAAG 2 cut(s) 477, 506
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 2 cut(s) 115, 214
AjnI CCWGG 2 cut(s) 245, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 118, 668
AluI AGCT 2 cut(s) 118, 668
Alw21I GWGCWC 3 cut(s) 48, 700, 709
Alw26I GTCTC 1 cut(s) 604
AoxI GGCC 5 cut(s) 30, 97, 160, 282, 516
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 251, 525
AspLEI GCGC 3 cut(s) 53, 179, 533
AspS9I GGNCC 3 cut(s) 98, 170, 452
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 79, 304, 556
AvaII GGWCC 2 cut(s) 170, 452
Bbv12I GWGCWC 3 cut(s) 48, 700, 709
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 13, 392
BceAI ACGGC 2 cut(s) 94, 269
BciT130I CCWGG 2 cut(s) 247, 310
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 3 cut(s) 30, 180, 225
BlsI GCNGC 3 cut(s) 31, 181, 226
Bme1390I CCNGG 3 cut(s) 174, 247, 310
Bme18I GGWCC 2 cut(s) 170, 452
BmgT120I GGNCC 3 cut(s) 98, 170, 452
BmiI GGNNCC 4 cut(s) 100, 172, 382, 453
BmrFI CCNGG 3 cut(s) 174, 247, 310
BmsI GCATC 5 cut(s) 193, 295, 316, 356, 629
BpmI CTGGAG 2 cut(s) 83, 494
BpuMI CCSGG 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 246, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 2 cut(s) 247, 310
BseCI ATCGAT 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 246, 643
BseGI GGATG 4 cut(s) 208, 347, 592, 620
BseLI CCNNNNNNNGG 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 2 cut(s) 179, 231
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 5 cut(s) 32, 99, 162, 284, 518
BshVI ATCGAT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 3 cut(s) 48, 700, 709
BsiSI CCGG 2 cut(s) 168, 174
BslFI GGGAC 2 cut(s) 156, 465
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 2 cut(s) 156, 465
BsnI GGCC 5 cut(s) 32, 99, 162, 284, 518
Bsp1286I GDGCHC 3 cut(s) 48, 700, 709
Bsp143I GATC 1 cut(s) 492
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 5 cut(s) 29, 179, 182, 229, 435
BspANI GGCC 5 cut(s) 32, 99, 162, 284, 518
BspDI ATCGAT 1 cut(s) 269
BspFNI CGCG 2 cut(s) 179, 231
BspLI GGNNCC 4 cut(s) 100, 172, 382, 453
BspQI GCTCTTC 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 246, 643
BssMI GATC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 643
Bst2UI CCWGG 2 cut(s) 247, 310
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 2 cut(s) 209, 504
BstC8I GCNNGC 4 cut(s) 44, 222, 229, 535
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 4 cut(s) 208, 347, 592, 620
BstFNI CGCG 2 cut(s) 179, 231
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 3 cut(s) 53, 179, 533
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 1 cut(s) 492
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 4 cut(s) 48, 115, 578, 704
BstNI CCWGG 2 cut(s) 247, 310
BstSCI CCNGG 3 cut(s) 172, 245, 308
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 2 cut(s) 179, 231
BstV1I GCAGC 1 cut(s) 211
BstXI CCANNNNNNTGG 2 cut(s) 541, 650
BstZI CGGCCG 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 269
BsuRI GGCC 5 cut(s) 32, 99, 162, 284, 518
BsuTUI ATCGAT 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 4 cut(s) 208, 347, 592, 620
Cac8I GCNNGC 4 cut(s) 44, 222, 229, 535
CfoI GCGC 3 cut(s) 53, 179, 533
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 98, 170, 452
ClaI ATCGAT 1 cut(s) 269
Csp6I GTAC 1 cut(s) 317
CviAII CATG 4 cut(s) 142, 344, 371, 644
CviQI GTAC 1 cut(s) 317
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 30, 282
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 209, 504
EarI CTCTTC 2 cut(s) 209, 504
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 170, 452
Eco52I CGGCCG 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 477, 506
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 245, 308
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 4 cut(s) 145, 347, 374, 647
FaiI YATR 6 cut(s) 143, 345, 372, 378, 645, 651
FaqI GGGAC 2 cut(s) 156, 465
FatI CATG 4 cut(s) 141, 343, 370, 643
FauI CCCGC 1 cut(s) 236
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 3 cut(s) 30, 180, 225
FokI GGATG 4 cut(s) 215, 334, 599, 607
Fsp4HI GCNGC 3 cut(s) 30, 180, 225
FspBI CTAG 1 cut(s) 582
GlaI GCGC 3 cut(s) 52, 178, 532
GluI GCNGC 3 cut(s) 30, 180, 225
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 2 cut(s) 83, 494
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 5 cut(s) 32, 99, 162, 284, 518
HapII CCGG 2 cut(s) 168, 174
HhaI GCGC 3 cut(s) 53, 179, 533
Hin1II CATG 4 cut(s) 145, 347, 374, 647
Hin6I GCGC 3 cut(s) 51, 177, 531
HinP1I GCGC 3 cut(s) 51, 177, 531
HinfI GANTC 1 cut(s) 70
HpaII CCGG 2 cut(s) 168, 174
HphI GGTGA 3 cut(s) 79, 304, 556
Hpy166II GTNNAC 3 cut(s) 69, 130, 511
Hpy188III TCNNGA 3 cut(s) 62, 74, 473
Hpy8I GTNNAC 3 cut(s) 69, 130, 511
Hpy99I CGWCG 2 cut(s) 38, 161
HpyAV CCTTC 2 cut(s) 156, 293
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 115, 578, 704
Hsp92II CATG 4 cut(s) 145, 347, 374, 647
HspAI GCGC 3 cut(s) 51, 177, 531
Kzo9I GATC 1 cut(s) 492
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 5 cut(s) 193, 295, 316, 356, 629
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 399, 544
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 5 cut(s) 76, 226, 491, 499, 502
MhlI GDGCHC 3 cut(s) 48, 700, 709
MluCI AATT 2 cut(s) 251, 525
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 8 cut(s) 160, 173, 178, 210, 283, 425, 469, 592
Mph1103I ATGCAT 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 375, 648
MspI CCGG 2 cut(s) 168, 174
MspR9I CCNGG 3 cut(s) 174, 247, 310
MvaI CCWGG 2 cut(s) 247, 310
MvnI CGCG 2 cut(s) 179, 231
MwoI GCNNNNNNNGC 4 cut(s) 48, 115, 578, 704
NciI CCSGG 1 cut(s) 174
NcoI CCATGG 1 cut(s) 643
NdeII GATC 1 cut(s) 492
NlaIII CATG 4 cut(s) 145, 347, 374, 647
NlaIV GGNNCC 4 cut(s) 100, 172, 382, 453
NmuCI GTSAC 2 cut(s) 399, 544
NsiI ATGCAT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 504
PkrI GCNGC 3 cut(s) 31, 181, 226
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 245, 308
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 245, 308
PspN4I GGNNCC 4 cut(s) 100, 172, 382, 453
PspPI GGNCC 3 cut(s) 98, 170, 452
PspPPI RGGWCCY 1 cut(s) 452
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 375, 648
SapI GCTCTTC 1 cut(s) 504
SatI GCNGC 3 cut(s) 30, 180, 225
Sau3AI GATC 1 cut(s) 492
Sau96I GGNCC 3 cut(s) 98, 170, 452
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 3 cut(s) 174, 247, 310
SduI GDGCHC 3 cut(s) 48, 700, 709
SetI ASST 7 cut(s) 120, 189, 294, 395, 457, 486, 670
SfaNI GCATC 5 cut(s) 193, 295, 316, 356, 629
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 170, 452
SmiMI CAYNNNNRTG 2 cut(s) 375, 648
Sse9I AATT 2 cut(s) 251, 525
SsiI CCGC 5 cut(s) 29, 179, 182, 229, 435
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 172, 245, 308
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 1 cut(s) 695
TaqI TCGA 2 cut(s) 269, 502
TasI AATT 2 cut(s) 251, 525
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 32, 182
TseFI GTSAC 2 cut(s) 399, 544
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 2 cut(s) 399, 544
TspGWI ACGGA 2 cut(s) 340, 613
VpaK11BI GGWCC 2 cut(s) 170, 452
XapI RAATTY 2 cut(s) 251, 525
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.