MD11G1310900.v1.1

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003052
Physical Location & Seq
Reverse (-)
42360673 .. 42361696
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1310900.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGCGAGTAACACTGTCGAGAATTCGAAGCAAGTAATGGTGGTTGCTATGGACGAGAGCGACCACAGCACGTACGCGCTCGAATGGACTCTCAGCCACTTCTTTATCCCCTATACATCAAACCCCGCTTTCAAGCTCGTCGTCGTCCATGCCAAGCCCCCTCCTCCCGCCATGGCCCTTGTCGGACCTGGAGGAGCTAAAGTTTTGCCAATTCTGGAGGCAGACTTACAGAAGATAGCCATGCGAGTTGTCGAGAAGGCGAAGAAAATTTGTGCCAGTAAACAGGTGAATGATGTGGTGGTGGAGTTGGTGGCTGGGGATGCTCGAAACGTTCTCTGTGAGGCTGTAGAAAAACACAAGGCATCCATCTTGGTTTCTGGAAGCCATGGCTATGGAGCTATCAAAAGGGCCGTCCTGGGCAGCGTAAGCGATTATTGCGCTCATCATGCTCACTGCACTGTGATGATTGTGAAGAGGCCGAAAATTGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

165

Amino Acids

17.67

Weight (kDa)

8.66

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 13 - 158 7.3e-26 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 126, 168
AclI AACGTT 1 cut(s) 330
AcsI RAATTY 2 cut(s) 22, 267
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 2 cut(s) 133, 488
AjnI CCWGG 2 cut(s) 187, 414
AluBI AGCT 3 cut(s) 136, 197, 398
AluI AGCT 3 cut(s) 136, 197, 398
AoxI GGCC 3 cut(s) 174, 408, 476
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 2 cut(s) 22, 267
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
AspLEI GCGC 2 cut(s) 79, 440
AspS9I GGNCC 3 cut(s) 175, 185, 408
AsuHPI GGTGA 1 cut(s) 298
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 432
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 189, 416
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 1 cut(s) 421
BlsI GCNGC 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 189, 416
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 175, 185, 408
BmrFI CCNGG 2 cut(s) 189, 416
BmsI GCATC 2 cut(s) 310, 371
BpmI CTGGAG 2 cut(s) 210, 236
Bpu14I TTCGAA 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 171, 385, 415
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 189, 416
BseDI CCNNGG 3 cut(s) 171, 385, 415
BseGI GGATG 2 cut(s) 325, 362
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 153, 207
BseXI GCAGC 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 176, 410, 478
BsiWI CGTACG 1 cut(s) 72
BsnI GGCC 3 cut(s) 176, 410, 478
Bsp119I TTCGAA 1 cut(s) 26
Bsp19I CCATGG 2 cut(s) 171, 385
BspACI CCGC 2 cut(s) 126, 168
BspANI GGCC 3 cut(s) 176, 410, 478
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 171, 385, 415
BssT1I CCWWGG 2 cut(s) 171, 385
Bst2UI CCWGG 2 cut(s) 189, 416
Bst4CI ACNGT 2 cut(s) 16, 460
Bst6I CTCTTC 1 cut(s) 467
BstBAI YACGTR 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 2 cut(s) 171, 385
BstF5I GGATG 2 cut(s) 325, 362
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 440
BstMWI GCNNNNNNNGC 5 cut(s) 66, 320, 426, 435, 446
BstNI CCWGG 2 cut(s) 189, 416
BstSCI CCNGG 2 cut(s) 187, 414
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 3 cut(s) 176, 410, 478
BtgI CCRYGG 2 cut(s) 171, 385
BtsCI GGATG 2 cut(s) 325, 362
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 12, 451, 456
CfoI GCGC 2 cut(s) 79, 440
Cfr13I GGNCC 3 cut(s) 175, 185, 408
Csp6I GTAC 1 cut(s) 73
CviAII CATG 5 cut(s) 149, 172, 241, 386, 446
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco130I CCWWGG 2 cut(s) 171, 385
Eco47I GGWCC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 187, 414
EcoT14I CCWWGG 2 cut(s) 171, 385
ErhI CCWWGG 2 cut(s) 171, 385
FaeI CATG 5 cut(s) 152, 175, 244, 389, 449
FaiI YATR 8 cut(s) 50, 114, 150, 173, 242, 387, 393, 447
FatI CATG 5 cut(s) 148, 171, 240, 385, 445
FauI CCCGC 2 cut(s) 133, 175
Fnu4HI GCNGC 1 cut(s) 421
FokI GGATG 2 cut(s) 332, 349
Fsp4HI GCNGC 1 cut(s) 421
GlaI GCGC 2 cut(s) 78, 439
GluI GCNGC 1 cut(s) 421
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 2 cut(s) 210, 236
HaeIII GGCC 3 cut(s) 176, 410, 478
HhaI GCGC 2 cut(s) 79, 440
Hin1II CATG 5 cut(s) 152, 175, 244, 389, 449
Hin6I GCGC 2 cut(s) 77, 438
HinP1I GCGC 2 cut(s) 77, 438
HinfI GANTC 1 cut(s) 88
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 4 cut(s) 19, 215, 253, 378
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 2 cut(s) 143, 146
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 16, 460
HpyCH4IV ACGT 2 cut(s) 71, 330
HpyCH4V TGCA 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 320, 426, 435, 446
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 2 cut(s) 71, 330
Hsp92II CATG 5 cut(s) 152, 175, 244, 389, 449
HspAI GCGC 2 cut(s) 77, 438
LmnI GCTCC 2 cut(s) 194, 395
LpnPI CCDG 9 cut(s) 174, 200, 201, 269, 289, 300, 363, 401, 428
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 2 cut(s) 310, 371
MaeII ACGT 2 cut(s) 71, 330
MaeIII GTNAC 1 cut(s) 8
MboII GAAGA 3 cut(s) 244, 274, 484
MluCI AATT 4 cut(s) 22, 210, 267, 483
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 171, 174, 185, 211, 334, 468
MslI CAYNNNNRTG 2 cut(s) 390, 461
MspR9I CCNGG 2 cut(s) 189, 416
MvaI CCWGG 2 cut(s) 189, 416
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 66, 320, 426, 435, 446
NcoI CCATGG 2 cut(s) 171, 385
NlaIII CATG 5 cut(s) 152, 175, 244, 389, 449
NspV TTCGAA 1 cut(s) 26
Pfl23II CGTACG 1 cut(s) 72
PkrI GCNGC 1 cut(s) 422
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 187, 414
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 187, 414
PspLI CGTACG 1 cut(s) 72
PspPI GGNCC 3 cut(s) 175, 185, 408
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 2 cut(s) 390, 461
SatI GCNGC 1 cut(s) 421
Sau96I GGNCC 3 cut(s) 175, 185, 408
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 189, 416
SetI ASST 7 cut(s) 74, 138, 190, 199, 288, 333, 400
SfaNI GCATC 2 cut(s) 310, 371
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 390, 461
Sse9I AATT 4 cut(s) 22, 210, 267, 483
SsiI CCGC 2 cut(s) 126, 168
StyD4I CCNGG 2 cut(s) 187, 414
StyI CCWWGG 2 cut(s) 171, 385
TaaI ACNGT 2 cut(s) 16, 460
TaiI ACGT 2 cut(s) 74, 333
TaqI TCGA 5 cut(s) 18, 26, 81, 252, 325
TasI AATT 4 cut(s) 22, 210, 267, 483
TscAI CASTG 3 cut(s) 19, 458, 463
TseI GCWGC 1 cut(s) 420
TspRI CASTG 3 cut(s) 19, 458, 463
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 2 cut(s) 22, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.