Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Forward (+)

22017222 .. 22019323

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G260100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCGACGACTGGAGAGAAGCAAGTGATGGTGATCGGGGCCGACGAGAGCGAGCAGAGCACTTATGCTCTGGAATGGACTCTGGACCATTTCTTCGCGCCCTTCGGTCCCACGTCTCCGTTCAAGCTCGTCATCGTCCACGCCAAGTCCATGCCTTCCTCCGTCGTTGGCCTCGCCGGCCCTGGAGCGGCGGAGGTTTTGCCAATTGTGGATGCTGATTTGAAGAGGATGGCTGCCCGCGTTGCTGACAAGGCTAAGCAACTTTGCGCTACCAAATCGGTGACTGATGTCACTGTGGAGTTGGTGGAAGGAGATGCTAGGAATGTTCTCTGTGACGCTGTTGACAGGCACCATGCATCCGTCTTGGTTGTCGGTAGTCATGGCTATGGAGCCATAAAAAGGGCGGTTCTTGGAAGCGTAAGTGACTATTGTGCTCATCACGCTCACTGCAGCGTGATGATTGTGAAGAAGCCTAAAACAAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

163

Amino Acids

17.2

Weight (kDa)

7.12

Isoelectric Point (pI)

22.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	2 cut(s)	98, 240
AciI	CCGC	4 cut(s)	188, 191, 238, 404
AfiI	CCNNNNNNNGG	2 cut(s)	187, 399
AgsI	TTSAA	2 cut(s)	124, 223
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	2 cut(s)	62, 436
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	3 cut(s)	39, 169, 178
ApeKI	GCWGC	2 cut(s)	233, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	2 cut(s)	100, 269
AspS9I	GGNCC	4 cut(s)	39, 85, 107, 179
AsuHPI	GGTGA	2 cut(s)	43, 292
AvaII	GGWCC	2 cut(s)	85, 107
BanI	GGYRCC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	62, 436
BbvI	GCAGC	2 cut(s)	220, 462
BccI	CCATC	2 cut(s)	22, 223
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	177
BisI	GCNGC	3 cut(s)	189, 234, 451
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	3 cut(s)	190, 235, 452
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	85, 107
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	4 cut(s)	39, 85, 107, 179
BmiI	GGNNCC	4 cut(s)	40, 109, 350, 391
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	3 cut(s)	202, 304, 365
BoxI	GACNNNNGTC	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	33, 204
Bpu1102I	GCTNAGC	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 399
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	217, 234, 356
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	187, 399
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	220, 462
Bsh1236I	CGCG	2 cut(s)	98, 240
BshFI	GGCC	3 cut(s)	41, 171, 180
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	62, 436
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	187, 399
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	41, 171, 180
Bsp1286I	GDGCHC	2 cut(s)	62, 436
Bsp143I	GATC	1 cut(s)	33
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	4 cut(s)	188, 191, 238, 404
BspANI	GGCC	3 cut(s)	41, 171, 180
BspFNI	CGCG	2 cut(s)	98, 240
BspLI	GGNNCC	4 cut(s)	40, 109, 350, 391
BspMAI	CTGCAG	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	53, 178, 238
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	217, 234, 356
BstFNI	CGCG	2 cut(s)	98, 240
BstHHI	GCGC	2 cut(s)	100, 269
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 177, 242, 251, 440
BstNI	CCWGG	1 cut(s)	183
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	448
BstUI	CGCG	2 cut(s)	98, 240
BstV1I	GCAGC	2 cut(s)	220, 462
BsuRI	GGCC	3 cut(s)	41, 171, 180
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	217, 234, 356
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	291, 445
Cac8I	GCNNGC	3 cut(s)	53, 178, 238
CfoI	GCGC	2 cut(s)	100, 269
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	4 cut(s)	39, 85, 107, 179
CseI	GACGC	1 cut(s)	344
CviAII	CATG	3 cut(s)	151, 353, 380
CviJI	RGCY	9 cut(s)	41, 127, 171, 180, 233, 254, 384, 392, 472
CviKI_1	RGCY	9 cut(s)	41, 127, 171, 180, 233, 254, 384, 392, 472
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	85, 107
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	3 cut(s)	154, 356, 383
FaiI	YATR	6 cut(s)	66, 152, 354, 381, 387, 395
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	150, 352, 379
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	3 cut(s)	189, 234, 451
FokI	GGATG	3 cut(s)	224, 241, 343
Fsp4HI	GCNGC	3 cut(s)	189, 234, 451
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	99, 268
GluI	GCNGC	3 cut(s)	189, 234, 451
GsuI	CTGGAG	2 cut(s)	33, 204
HaeIII	GGCC	3 cut(s)	41, 171, 180
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	100, 269
Hin1II	CATG	3 cut(s)	154, 356, 383
Hin6I	GCGC	2 cut(s)	98, 267
HinP1I	GCGC	2 cut(s)	98, 267
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	43, 292
Hpy166II	GTNNAC	2 cut(s)	139, 343
Hpy188III	TCNNGA	2 cut(s)	71, 83
Hpy8I	GTNNAC	2 cut(s)	139, 343
Hpy99I	CGWCG	3 cut(s)	10, 47, 167
HpyAV	CCTTC	3 cut(s)	112, 165, 302
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	356, 450
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 177, 242, 251, 440
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	154, 356, 383
HspAI	GCGC	2 cut(s)	98, 267
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	185, 389
LpnPI	CCDG	6 cut(s)	56, 68, 168, 190, 195, 331
Lsp1109I	GCAGC	2 cut(s)	220, 462
LweI	GCATC	3 cut(s)	202, 304, 365
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	4 cut(s)	280, 289, 332, 422
MalI	GATC	1 cut(s)	35
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	85, 235, 478
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	62, 436
MluCI	AATT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	169, 182, 187, 219
Mph1103I	ATGCAT	1 cut(s)	358
MroNI	GCCGGC	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	2 cut(s)	98, 240
MwoI	GCNNNNNNNGC	5 cut(s)	57, 177, 242, 251, 440
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	33
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	154, 356, 383
NlaIV	GGNNCC	4 cut(s)	40, 109, 350, 391
NmuCI	GTSAC	4 cut(s)	280, 289, 332, 422
NsiI	ATGCAT	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	190, 235, 452
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	4 cut(s)	40, 109, 350, 391
PspPI	GGNCC	4 cut(s)	39, 85, 107, 179
PstI	CTGCAG	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	384
SatI	GCNGC	3 cut(s)	189, 234, 451
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	4 cut(s)	39, 85, 107, 179
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	62, 436
SetI	ASST	3 cut(s)	116, 129, 198
SfaNI	GCATC	3 cut(s)	202, 304, 365
SfcI	CTRYAG	1 cut(s)	448
SfiI	GGCCNNNNNGGCC	1 cut(s)	177
SinI	GGWCC	2 cut(s)	85, 107
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	4 cut(s)	188, 191, 238, 404
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	116
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	191
TscAI	CASTG	2 cut(s)	298, 452
TseFI	GTSAC	4 cut(s)	280, 289, 332, 422
TseI	GCWGC	2 cut(s)	233, 450
Tsp45I	GTSAC	4 cut(s)	280, 289, 332, 422
TspGWI	ACGGA	3 cut(s)	108, 151, 349
TspRI	CASTG	2 cut(s)	298, 452
VpaK11BI	GGWCC	2 cut(s)	85, 107
XspI	CTAG	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.