Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Forward (+)

13957347 .. 13958678

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1167500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGGAAGGTGTTAACAAGAAGCCGTTGATGCTAGTCGCAGTGGACGACAGCGATCATAGCTTTTACGCGTTGGAGTGGACTTTGGATCATTTATTTGCTCAGGGCACCAACCATCCTTTCAAGCTCGTCATTGTTCATGCTAGGGCTTCTCCCTCATCTGCACTCGGCGTCGCCGGATTCGGGTCTGGGGAGTTTATAACTTCCTTGGAGTCGGATATGAAGAAAATATCTAGTAAGACTGTGCAGAAGGCCAAGGACTTTTGCACCAGTAAAAAGGTGGAAAATGTGGAAGTGGAGGTAATGGAAGGTGATCCAAGAAATGTTATGTGCGACGCTGTGGATAAACATCATGCCTCCCTTTTGGTTCTTGGCAGTCATGGTTATGGAATCGTAAAGAGGGCGGTTCTGGGAAGTGTAAGCGACTATTGTGCCCATCACGCAAAGTGCTCCGTGATGATTGTGAAGAAACCCGCCAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.45

Weight (kDa)

7.75

Isoelectric Point (pI)

17.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	11 - 156	1.4e-27	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	107
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	5, 404, 474
AclWI	GGATC	2 cut(s)	96, 308
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	2 cut(s)	63, 127
AluI	AGCT	2 cut(s)	63, 127
Alw21I	GWGCWC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	96, 308
AoxI	GGCC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	2 cut(s)	110, 436
BanI	GGYRCC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	2 cut(s)	123, 444
BceAI	ACGGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BfaI	CTAG	3 cut(s)	35, 144, 234
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	207, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	207, 255
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	270
BseSI	GKGCMC	2 cut(s)	110, 436
BsgI	GTGCAG	2 cut(s)	147, 266
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	110, 436, 452
Bsp143I	GATC	3 cut(s)	55, 88, 313
BspACI	CCGC	3 cut(s)	5, 404, 474
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	96, 308
BspT107I	GGYRCC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	207, 255
BssMI	GATC	3 cut(s)	55, 88, 313
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	207, 255
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	58, 91, 316
BstMBI	GATC	3 cut(s)	55, 88, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 60, 440
BstSLI	GKGCMC	2 cut(s)	110, 436
BstUI	CGCG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CseI	GACGC	2 cut(s)	160, 344
CviAII	CATG	3 cut(s)	140, 353, 380
CviJI	RGCY	5 cut(s)	25, 63, 127, 149, 254
CviKI_1	RGCY	5 cut(s)	25, 63, 127, 149, 254
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	57, 90, 315
DpnII	GATC	3 cut(s)	55, 88, 313
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	207, 255
EcoT14I	CCWWGG	2 cut(s)	207, 255
ErhI	CCWWGG	2 cut(s)	207, 255
FaeI	CATG	3 cut(s)	143, 356, 383
FaiI	YATR	8 cut(s)	60, 141, 200, 221, 329, 354, 381, 387
FatI	CATG	3 cut(s)	139, 352, 379
FauI	CCCGC	1 cut(s)	481
FokI	GGATG	1 cut(s)	102
FspBI	CTAG	3 cut(s)	35, 144, 234
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	2 cut(s)	160, 344
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	143, 356, 383
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	180, 212, 390
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	3 cut(s)	16, 46, 81
Hpy188I	TCNGA	1 cut(s)	217
Hpy8I	GTNNAC	3 cut(s)	16, 46, 81
Hpy99I	CGWCG	2 cut(s)	176, 338
HpyAV	CCTTC	2 cut(s)	244, 302
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	164, 247, 267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 60, 440
HpyF3I	CTNAG	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	143, 356, 383
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	55, 88, 313
LmnI	GCTCC	1 cut(s)	455
LpnPI	CCDG	5 cut(s)	89, 174, 190, 283, 395
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	3 cut(s)	35, 144, 234
MalI	GATC	3 cut(s)	57, 90, 315
MboI	GATC	3 cut(s)	55, 88, 313
MboII	GAAGA	2 cut(s)	235, 478
MhlI	GDGCHC	3 cut(s)	110, 436, 452
MluI	ACGCGT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	54, 195
MnlI	CCTC	4 cut(s)	166, 292, 367, 393
MseI	TTAA	2 cut(s)	15, 484
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	31, 60, 440
NdeII	GATC	3 cut(s)	55, 88, 313
NlaIII	CATG	3 cut(s)	143, 356, 383
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	180, 390
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	15, 484
Sau3AI	GATC	3 cut(s)	55, 88, 313
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	3 cut(s)	110, 436, 452
SetI	ASST	6 cut(s)	13, 65, 129, 282, 303, 313
SfaNI	GCATC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	384
SsiI	CCGC	3 cut(s)	5, 404, 474
SspMI	CTAG	3 cut(s)	35, 144, 234
StyI	CCWWGG	2 cut(s)	207, 255
TaaI	ACNGT	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	180, 390
Tru1I	TTAA	2 cut(s)	15, 484
Tru9I	TTAA	2 cut(s)	15, 484
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	128, 236
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	35, 144, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.