Rh6AG351900

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003052
Physical Location & Seq
Forward (+)
55082125 .. 55084257
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG351900.1

Sequence Viewer

Length: 462 bp
ATGGCAGAGAAGCAAGTGATGGTTGTGGCGGCCGACGAGAGCGAGCACAGCGCCTACGCTCTGGAGTGGACTCTGGAACACTTCGTCACCCCGTTCGGCCCCAACACGCCGTTCAAGCTCGTCATCGTCCACGCCAAGCCCATGCCTTCCTCTGTCGTCGGCCTCGCCGGTCCCGGCGCGGCGGAGGTTCTGCCGATTGTGGATGCTGATTTGAAGAGGCAGGCTGCTCGCGTTAGTGACAAGGCCAAGGAATTTTGTGAGTCTAAATCGGTAAAAGATGTGGTCGTAGAGGTGATAGAAGGCGATGCCAGGAATGTACTCTGTGATGCTGTGGAAAGACACCATGCATCCGTCTTGGTTCTGGGTAGTCATGGCTATGGAGCCATCAAAAGGTATTCGTCACACCCTGTTCCAATGTTGCCAATTTTGAGAGTTCAGTTGTATGGTATCATCTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

153

Amino Acids

16.57

Weight (kDa)

5.95

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 132 1.3e-13 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 179, 231
AciI CCGC 3 cut(s) 29, 179, 182
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 2 cut(s) 115, 214
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 4 cut(s) 30, 97, 160, 243
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 53, 179
AspS9I GGNCC 2 cut(s) 98, 170
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 79, 304
AvaII GGWCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 13, 392
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 310
BcnI CCSGG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 3 cut(s) 30, 180, 225
BlsI GCNGC 3 cut(s) 31, 181, 226
Bme1390I CCNGG 2 cut(s) 174, 310
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 98, 170
BmiI GGNNCC 3 cut(s) 100, 172, 382
BmrFI CCNGG 2 cut(s) 174, 310
BmsI GCATC 4 cut(s) 193, 295, 316, 356
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 208, 347
BseLI CCNNNNNNNGG 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 179, 231
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 32, 99, 162, 245
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 168, 174
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 4 cut(s) 32, 99, 162, 245
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 3 cut(s) 29, 179, 182
BspANI GGCC 4 cut(s) 32, 99, 162, 245
BspFNI CGCG 2 cut(s) 179, 231
BspLI GGNNCC 3 cut(s) 100, 172, 382
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 44, 222, 229
BstF5I GGATG 2 cut(s) 208, 347
BstFNI CGCG 2 cut(s) 179, 231
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 179
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 48, 115
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 172, 308
BstUI CGCG 2 cut(s) 179, 231
BstV1I GCAGC 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 4 cut(s) 32, 99, 162, 245
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 208, 347
Cac8I GCNNGC 3 cut(s) 44, 222, 229
CfoI GCGC 2 cut(s) 53, 179
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 98, 170
Csp6I GTAC 1 cut(s) 317
CviAII CATG 3 cut(s) 142, 344, 371
CviJI RGCY 9 cut(s) 32, 99, 118, 139, 162, 224, 245, 375, 383
CviKI_1 RGCY 9 cut(s) 32, 99, 118, 139, 162, 224, 245, 375, 383
CviQI GTAC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 145, 347, 374
FaiI YATR 5 cut(s) 143, 345, 372, 378, 444
FaqI GGGAC 1 cut(s) 156
FatI CATG 3 cut(s) 141, 343, 370
Fnu4HI GCNGC 3 cut(s) 30, 180, 225
FokI GGATG 2 cut(s) 215, 334
Fsp4HI GCNGC 3 cut(s) 30, 180, 225
GlaI GCGC 2 cut(s) 52, 178
GluI GCNGC 3 cut(s) 30, 180, 225
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 32, 99, 162, 245
HapII CCGG 2 cut(s) 168, 174
HhaI GCGC 2 cut(s) 53, 179
Hin1II CATG 3 cut(s) 145, 347, 374
Hin6I GCGC 2 cut(s) 51, 177
HinP1I GCGC 2 cut(s) 51, 177
HinfI GANTC 2 cut(s) 70, 260
HpaII CCGG 2 cut(s) 168, 174
HphI GGTGA 2 cut(s) 79, 304
Hpy166II GTNNAC 2 cut(s) 69, 130
Hpy188III TCNNGA 2 cut(s) 62, 74
Hpy8I GTNNAC 2 cut(s) 69, 130
Hpy99I CGWCG 2 cut(s) 38, 161
HpyAV CCTTC 2 cut(s) 156, 293
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 115
Hsp92II CATG 3 cut(s) 145, 347, 374
HspAI GCGC 2 cut(s) 51, 177
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 9 cut(s) 47, 59, 181, 187, 206, 295, 322, 347, 420
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 4 cut(s) 193, 295, 316, 356
MaeIII GTNAC 3 cut(s) 85, 236, 399
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 2 cut(s) 251, 423
MlyI GAGTC 2 cut(s) 64, 269
MnlI CCTC 5 cut(s) 160, 173, 178, 210, 283
Mph1103I ATGCAT 1 cut(s) 349
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 2 cut(s) 168, 174
MspR9I CCNGG 2 cut(s) 174, 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 2 cut(s) 179, 231
MwoI GCNNNNNNNGC 2 cut(s) 48, 115
NciI CCSGG 1 cut(s) 174
NlaIII CATG 3 cut(s) 145, 347, 374
NlaIV GGNNCC 3 cut(s) 100, 172, 382
NmuCI GTSAC 3 cut(s) 85, 236, 399
NsiI ATGCAT 1 cut(s) 349
PkrI GCNGC 3 cut(s) 31, 181, 226
PleI GAGTC 2 cut(s) 64, 268
PpsI GAGTC 2 cut(s) 64, 268
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 100, 172, 382
PspPI GGNCC 2 cut(s) 98, 170
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 375
SatI GCNGC 3 cut(s) 30, 180, 225
Sau96I GGNCC 2 cut(s) 98, 170
SchI GAGTC 2 cut(s) 64, 269
ScrFI CCNGG 2 cut(s) 174, 310
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 120, 189, 294, 395
SfaNI GCATC 4 cut(s) 193, 295, 316, 356
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 2 cut(s) 251, 423
SsiI CCGC 3 cut(s) 29, 179, 182
StyD4I CCNGG 2 cut(s) 172, 308
StyI CCWWGG 1 cut(s) 246
TasI AATT 2 cut(s) 251, 423
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 32, 182
TseFI GTSAC 3 cut(s) 85, 236, 399
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 3 cut(s) 85, 236, 399
TspGWI ACGGA 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.