Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Reverse (-)

29503983 .. 29504890

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGCAAATTATTCATACCTAAATATTATTACGATTTAGAAGATAATTGCGATCGAAACAAAGCTGCAATGGCGAGTAACACTGTCGAGAACTCGAAGCAAGTAATGGTGGTTGCTATGGACGAGAGCGACCACAGCACGTACGCGCTCGAATGGACTCTCAGTCACTTCTTTATCCCCTATGCATCAAACCCTGTTTTCAAGCTCGTCGTCGTCCATGCCAAGCCCCCTCCTCCCGCCATGGCCCTTGTCGGACCTGGAGGAGCTAAAGTTTTGCCAATTCTGGAGGCAGACTTACAGAAGATAGCCATGCGAGTTGCCGAGAAGGCGAAGAAAATTTGCGCCAGTAAACAGGTGAATGATGTGGTGGTGGAGTTGGTGGCTGGGGATGCTCGAAACGTTCTCTGTGAGACTGTAGAAAAACACAAGGCATCCATCTTGGTTTCTGGAAGCCATGGCTATGGAGCTATCAAAAGGGCGGTCCTAGGCAGCGTAAGCGATTATTGCGCTCATCATGCTCACTGCACTGTGATGATTGTGAAGAGGCCGAAAATTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

188

Amino Acids

20.45

Weight (kDa)

8.89

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	237, 479
AclI	AACGTT	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	336
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	202
AhdI	GACNNNNNGTC	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	65, 205, 266, 467
AluI	AGCT	4 cut(s)	65, 205, 266, 467
Alw26I	GTCTC	1 cut(s)	404
AoxI	GGCC	2 cut(s)	243, 545
ApeKI	GCWGC	2 cut(s)	65, 489
ApoI	RAATTY	1 cut(s)	336
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AspA2I	CCTAGG	1 cut(s)	484
AspLEI	GCGC	3 cut(s)	148, 344, 509
AspS9I	GGNCC	3 cut(s)	244, 254, 481
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	254, 481
AvrII	CCTAGG	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	52, 501
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	414
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	2 cut(s)	66, 490
BlnI	CCTAGG	1 cut(s)	484
BlsI	GCNGC	2 cut(s)	67, 491
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	254, 481
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmgT120I	GGNCC	3 cut(s)	244, 254, 481
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	194, 379, 440
BpmI	CTGGAG	2 cut(s)	279, 305
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	240, 454, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	240, 454, 484
BseGI	GGATG	2 cut(s)	394, 431
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	222, 276
BseXI	GCAGC	2 cut(s)	52, 501
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	245, 547
BsiEI	CGRYCG	1 cut(s)	55
BsiWI	CGTACG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	245, 547
Bsp143I	GATC	1 cut(s)	52
Bsp19I	CCATGG	2 cut(s)	240, 454
BspACI	CCGC	2 cut(s)	237, 479
BspANI	GGCC	2 cut(s)	245, 547
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	240, 454, 484
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	3 cut(s)	240, 454, 484
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	85, 415, 529
Bst6I	CTCTTC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	2 cut(s)	240, 454
BstF5I	GGATG	2 cut(s)	394, 431
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	3 cut(s)	148, 344, 509
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 135, 326, 389, 495, 504, 515
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	52, 501
BstXI	CCANNNNNNTGG	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	245, 547
BtgI	CCRYGG	2 cut(s)	240, 454
BtsCI	GGATG	2 cut(s)	394, 431
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	3 cut(s)	81, 520, 525
CfoI	GCGC	3 cut(s)	148, 344, 509
Cfr13I	GGNCC	3 cut(s)	244, 254, 481
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	5 cut(s)	218, 241, 310, 455, 515
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DriI	GACNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	536
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	3 cut(s)	240, 454, 484
Eco47I	GGWCC	2 cut(s)	254, 481
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	240, 454, 484
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	3 cut(s)	240, 454, 484
FaeI	CATG	5 cut(s)	221, 244, 313, 458, 518
FaiI	YATR	9 cut(s)	17, 119, 183, 219, 242, 311, 456, 462, 516
FatI	CATG	5 cut(s)	217, 240, 309, 454, 514
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	66, 490
FokI	GGATG	2 cut(s)	401, 418
Fsp4HI	GCNGC	2 cut(s)	66, 490
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	3 cut(s)	147, 343, 508
GluI	GCNGC	2 cut(s)	66, 490
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	2 cut(s)	279, 305
HaeIII	GGCC	2 cut(s)	245, 547
HhaI	GCGC	3 cut(s)	148, 344, 509
Hin1II	CATG	5 cut(s)	221, 244, 313, 458, 518
Hin6I	GCGC	3 cut(s)	146, 342, 507
HinP1I	GCGC	3 cut(s)	146, 342, 507
HinfI	GANTC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	88, 284, 447
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	212, 215
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	3 cut(s)	85, 415, 529
HpyCH4IV	ACGT	2 cut(s)	140, 399
HpyCH4V	TGCA	3 cut(s)	68, 185, 525
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 135, 326, 389, 495, 504, 515
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	140, 399
Hsp92II	CATG	5 cut(s)	221, 244, 313, 458, 518
HspAI	GCGC	3 cut(s)	146, 342, 507
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	263, 464
LpnPI	CCDG	8 cut(s)	207, 243, 269, 270, 338, 358, 369, 432
Lsp1109I	GCAGC	2 cut(s)	52, 501
LweI	GCATC	3 cut(s)	194, 379, 440
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	140, 399
MaeIII	GTNAC	2 cut(s)	77, 164
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	4 cut(s)	53, 313, 343, 553
MluCI	AATT	5 cut(s)	8, 46, 279, 336, 552
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	5 cut(s)	240, 243, 254, 280, 537
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	2 cut(s)	459, 530
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	7 cut(s)	71, 135, 326, 389, 495, 504, 515
NcoI	CCATGG	2 cut(s)	240, 454
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	5 cut(s)	221, 244, 313, 458, 518
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	187
Pfl23II	CGTACG	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	67, 491
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	256
PspLI	CGTACG	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	244, 254, 481
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	459, 530
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	2 cut(s)	66, 490
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	3 cut(s)	244, 254, 481
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	9 cut(s)	22, 67, 143, 207, 259, 268, 357, 402, 469
SfaNI	GCATC	3 cut(s)	194, 379, 440
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	2 cut(s)	254, 481
SmiMI	CAYNNNNRTG	2 cut(s)	459, 530
Sse9I	AATT	5 cut(s)	8, 46, 279, 336, 552
SsiI	CCGC	2 cut(s)	237, 479
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	3 cut(s)	240, 454, 484
TaaI	ACNGT	3 cut(s)	85, 415, 529
TaiI	ACGT	2 cut(s)	143, 402
TaqI	TCGA	5 cut(s)	55, 87, 95, 150, 394
TasI	AATT	5 cut(s)	8, 46, 279, 336, 552
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	3 cut(s)	88, 527, 532
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	65, 489
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	3 cut(s)	88, 527, 532
VpaK11BI	GGWCC	2 cut(s)	254, 481
XapI	RAATTY	1 cut(s)	336
XmaJI	CCTAGG	1 cut(s)	484
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.