pycom03g22730

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0003052
Physical Location & Seq
Forward (+)
22788109 .. 22789157
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22730.2

Sequence Viewer

Length: 486 bp
ATGGCGGCAGAGAAGCAAGTGATAGTGATCGGGACGGACGACAGCGAGGAGAGCCATTACGCTCTGGAATGGACTTTGGATCACTTCTTCAAGCCTTTGGGCGGCGACGCAGCTCCGTTCAAGCTCATCATCGTCCACGCCAAGCAATCGGTTTCCTCCGTCGTTGGCTTCGCTGGCCCCGGGGCGGCGGAGGTTCTGCCGATCGTGGAAGCTGATTTGAAGAAGATGGCTGCCCATGTAACTCAGAAGGCCAAGGAATTTTGCGCTTCTAAATCGGTGACCGATGTGGTCGCGGAGGTTGTGGAAGGAGACGCTAGGAACGTTCTGTGTGAGGCTGTTGAAAGACACCACGCATCCATCTTGGTTGTGGGAAGCCATGGCTATGGAGCCATCAAAAGGGCGGTTCTGGGAAGCGTAAGCGACTACTGCACTCATCACGCTCACTGCACCGTGATGATTGTGAAGAAGCCTAAAACCAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

162

Amino Acids

17.22

Weight (kDa)

6.58

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 293
AciI CCGC 6 cut(s) 5, 102, 185, 188, 293, 401
AclI AACGTT 1 cut(s) 321
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 101, 184, 396
AgsI TTSAA 4 cut(s) 91, 121, 220, 341
AluBI AGCT 3 cut(s) 113, 124, 212
AluI AGCT 3 cut(s) 113, 124, 212
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 2 cut(s) 175, 249
ApeKI GCWGC 2 cut(s) 110, 230
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 180, 181
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 179
BbvI GCAGC 2 cut(s) 122, 217
BccI CCATC 3 cut(s) 220, 365, 398
BcnI CCSGG 2 cut(s) 180, 181
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 1 cut(s) 315
BisI GCNGC 5 cut(s) 6, 103, 111, 186, 231
BlsI GCNGC 5 cut(s) 7, 104, 112, 187, 232
Bme1390I CCNGG 2 cut(s) 180, 181
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 178, 388
BmrFI CCNGG 2 cut(s) 180, 181
BmsI GCATC 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 180, 181
BsaBI GATNNNNATC 1 cut(s) 26
BsaJI CCNNGG 5 cut(s) 178, 179, 180, 252, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 184, 396
Bse8I GATNNNNATC 1 cut(s) 26
BseDI CCNNGG 5 cut(s) 178, 179, 180, 252, 376
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 101, 184, 396
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 122, 217
BsgI GTGCAG 2 cut(s) 412, 430
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 177, 251
BsiEI CGRYCG 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 101, 184, 396
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 177, 251
BsoBI CYCGRG 1 cut(s) 179
Bsp143I GATC 3 cut(s) 27, 79, 201
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 6 cut(s) 5, 102, 185, 188, 293, 401
BspANI GGCC 2 cut(s) 177, 251
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 178, 388
BspPI GGATC 1 cut(s) 87
BssECI CCNNGG 5 cut(s) 178, 179, 180, 252, 376
BssMI GATC 3 cut(s) 27, 79, 201
BssT1I CCWWGG 2 cut(s) 252, 376
Bst4CI ACNGT 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 376
BstEII GGTNACC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 30, 82, 204
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 3 cut(s) 27, 79, 201
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 51, 174, 426
BstPI GGTNACC 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 178, 179
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 122, 217
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuRI GGCC 2 cut(s) 177, 251
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 442, 481
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 176
Cfr9I CCCGGG 1 cut(s) 179
CseI GACGC 2 cut(s) 116, 320
CviAII CATG 2 cut(s) 236, 377
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 29, 81, 203
DpnII GATC 3 cut(s) 27, 79, 201
EciI GGCGGA 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 252, 376
Eco88I CYCGRG 1 cut(s) 179
Eco91I GGTNACC 1 cut(s) 277
EcoO65I GGTNACC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 252, 376
ErhI CCWWGG 2 cut(s) 252, 376
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 2 cut(s) 239, 380
FaiI YATR 3 cut(s) 237, 378, 384
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 235, 376
Fnu4HI GCNGC 5 cut(s) 6, 103, 111, 186, 231
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 5 cut(s) 6, 103, 111, 186, 231
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 265
GluI GCNGC 5 cut(s) 6, 103, 111, 186, 231
HaeIII GGCC 2 cut(s) 177, 251
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 116, 320
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 239, 380
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 31, 65
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 110, 164
HpyAV CCTTC 2 cut(s) 241, 299
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 429, 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 174, 426
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 2 cut(s) 239, 380
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 27, 79, 201
LmnI GCTCC 2 cut(s) 118, 386
LpnPI CCDG 4 cut(s) 50, 159, 193, 392
Lsp1109I GCAGC 2 cut(s) 122, 217
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 238, 277
MalI GATC 3 cut(s) 29, 81, 203
MboI GATC 3 cut(s) 27, 79, 201
MboII GAAGA 4 cut(s) 79, 232, 235, 475
MluCI AATT 1 cut(s) 257
MnlI CCTC 5 cut(s) 40, 166, 184, 289, 325
MslI CAYNNNNRTG 2 cut(s) 381, 452
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 180, 181
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 51, 174, 426
NciI CCSGG 2 cut(s) 180, 181
NcoI CCATGG 1 cut(s) 376
NdeII GATC 3 cut(s) 27, 79, 201
NlaIII CATG 2 cut(s) 239, 380
NlaIV GGNNCC 2 cut(s) 178, 388
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 318
PkrI GCNGC 5 cut(s) 7, 104, 112, 187, 232
Ple19I CGATCG 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 321
PspEI GGTNACC 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 178, 388
PspPI GGNCC 1 cut(s) 176
PvuI CGATCG 1 cut(s) 204
RseI CAYNNNNRTG 2 cut(s) 381, 452
SatI GCNGC 5 cut(s) 6, 103, 111, 186, 231
Sau3AI GATC 3 cut(s) 27, 79, 201
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 180, 181
SetI ASST 6 cut(s) 115, 126, 195, 214, 300, 324
SfaNI GCATC 1 cut(s) 362
SmaI CCCGGG 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 381, 452
Sse9I AATT 1 cut(s) 257
SsiI CCGC 6 cut(s) 5, 102, 185, 188, 293, 401
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 178, 179
StyI CCWWGG 2 cut(s) 252, 376
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 1 cut(s) 324
TaqII GACCGA 1 cut(s) 296
TasI AATT 1 cut(s) 257
TauI GCSGC 3 cut(s) 8, 105, 188
TscAI CASTG 1 cut(s) 449
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 110, 230
Tsp45I GTSAC 1 cut(s) 277
TspGWI ACGGA 3 cut(s) 50, 105, 148
TspMI CCCGGG 1 cut(s) 179
TspRI CASTG 1 cut(s) 449
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmaI CCCGGG 1 cut(s) 179
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.