Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000470.1

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 2972

Gene Structure 2933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000470.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcagagaagcaagtgatggttgtggcggccgacgagagcgagcacagcgcctacgctctggagtggactctggaacacttcgtcaccccgttcggccccaacacgccgttcaagctcgtcatcgtccacgccaagcccatgccttcctctgtcgtcggcctcgccggtcccggcgcggcggaggttctgccgattgtggatgctgatttgaagaggcaggctgcccgcgttagtgagaaggccaaggaattttgtgagtctaaatcgataaaagatgtggtcgtagaggtgatagaaggcgatgccaggaatgtactctgtgatgctgtggaaagacaccatgcatccgtcttggttctgggtagtcatggctatggagccatcaaaagggcggttttgggaagtgtgactgatgtggtagtggaagtggttgctgggggtgctagggatgttttctgtgaggctgtagagagacacaaggcatccatattggtttctggtagccatggctatggagttatcaaaaggtacttatatgtttacgtctttacaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

186

Amino Acids

19.98

Weight (kDa)

6.05

Isoelectric Point (pI)

23.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	179, 231
AciI	CCGC	5 cut(s)	29, 179, 182, 229, 395
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	318, 533
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	115, 214
AjnI	CCWGG	1 cut(s)	308
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	469
AoxI	GGCC	4 cut(s)	30, 97, 160, 243
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	53, 179
AspS9I	GGNCC	2 cut(s)	98, 170
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	79, 304
AvaII	GGWCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	13, 392
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	3 cut(s)	30, 180, 225
BlsI	GCNGC	3 cut(s)	31, 181, 226
Bme1390I	CCNGG	2 cut(s)	174, 310
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	98, 170
BmiI	GGNNCC	3 cut(s)	100, 172, 382
BmrFI	CCNGG	2 cut(s)	174, 310
BmsI	GCATC	5 cut(s)	193, 295, 316, 356, 494
BpmI	CTGGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	246, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	246, 508
BseGI	GGATG	4 cut(s)	208, 347, 457, 485
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	2 cut(s)	179, 231
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	32, 99, 162, 245
BshVI	ATCGAT	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	168, 174
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	32, 99, 162, 245
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	5 cut(s)	29, 179, 182, 229, 395
BspANI	GGCC	4 cut(s)	32, 99, 162, 245
BspDI	ATCGAT	1 cut(s)	269
BspFNI	CGCG	2 cut(s)	179, 231
BspLI	GGNNCC	3 cut(s)	100, 172, 382
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	246, 508
BssT1I	CCWWGG	2 cut(s)	246, 508
Bst2UI	CCWGG	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	44, 222, 229
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	4 cut(s)	208, 347, 457, 485
BstFNI	CGCG	2 cut(s)	179, 231
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 179
BstMAI	GTCTC	1 cut(s)	469
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 115, 443
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	172, 308
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	2 cut(s)	179, 231
BstV1I	GCAGC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstZI	CGGCCG	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	269
BsuRI	GGCC	4 cut(s)	32, 99, 162, 245
BsuTUI	ATCGAT	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	508
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	208, 347, 457, 485
Cac8I	GCNNGC	3 cut(s)	44, 222, 229
CfoI	GCGC	2 cut(s)	53, 179
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	98, 170
ClaI	ATCGAT	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	317, 532
CviAII	CATG	4 cut(s)	142, 344, 371, 509
CviQI	GTAC	2 cut(s)	317, 532
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	246, 508
Eco47I	GGWCC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	246, 508
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	246, 508
FaeI	CATG	4 cut(s)	145, 347, 374, 512
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	4 cut(s)	141, 343, 370, 508
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	3 cut(s)	30, 180, 225
FokI	GGATG	4 cut(s)	215, 334, 464, 472
Fsp4HI	GCNGC	3 cut(s)	30, 180, 225
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	52, 178
GluI	GCNGC	3 cut(s)	30, 180, 225
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	32, 99, 162, 245
HapII	CCGG	2 cut(s)	168, 174
HhaI	GCGC	2 cut(s)	53, 179
Hin1II	CATG	4 cut(s)	145, 347, 374, 512
Hin6I	GCGC	2 cut(s)	51, 177
HinP1I	GCGC	2 cut(s)	51, 177
HinfI	GANTC	2 cut(s)	70, 260
HpaII	CCGG	2 cut(s)	168, 174
HphI	GGTGA	2 cut(s)	79, 304
Hpy166II	GTNNAC	3 cut(s)	69, 130, 544
Hpy188III	TCNNGA	2 cut(s)	62, 74
Hpy8I	GTNNAC	3 cut(s)	69, 130, 544
Hpy99I	CGWCG	2 cut(s)	38, 161
HpyAV	CCTTC	3 cut(s)	156, 235, 293
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 115, 443
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	145, 347, 374, 512
HspAI	GCGC	2 cut(s)	51, 177
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	5 cut(s)	193, 295, 316, 356, 494
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	85, 409
MboII	GAAGA	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	64, 269
MnlI	CCTC	6 cut(s)	160, 173, 178, 210, 283, 457
Mph1103I	ATGCAT	1 cut(s)	349
MslI	CAYNNNNRTG	2 cut(s)	375, 513
MspI	CCGG	2 cut(s)	168, 174
MspR9I	CCNGG	2 cut(s)	174, 310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	179, 231
MwoI	GCNNNNNNNGC	3 cut(s)	48, 115, 443
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	508
NlaIII	CATG	4 cut(s)	145, 347, 374, 512
NlaIV	GGNNCC	3 cut(s)	100, 172, 382
NmuCI	GTSAC	2 cut(s)	85, 409
NsiI	ATGCAT	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	31, 181, 226
PleI	GAGTC	2 cut(s)	64, 268
PpsI	GAGTC	2 cut(s)	64, 268
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	3 cut(s)	100, 172, 382
PspPI	GGNCC	2 cut(s)	98, 170
RsaI	GTAC	2 cut(s)	318, 533
RsaNI	GTAC	2 cut(s)	317, 532
RseI	CAYNNNNRTG	2 cut(s)	375, 513
SatI	GCNGC	3 cut(s)	30, 180, 225
Sau96I	GGNCC	2 cut(s)	98, 170
SchI	GAGTC	2 cut(s)	64, 269
ScrFI	CCNGG	2 cut(s)	174, 310
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	120, 189, 294, 533, 549
SfaNI	GCATC	5 cut(s)	193, 295, 316, 356, 494
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	375, 513
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	5 cut(s)	29, 179, 182, 229, 395
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	172, 308
StyI	CCWWGG	2 cut(s)	246, 508
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	251
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	2 cut(s)	32, 182
TseFI	GTSAC	2 cut(s)	85, 409
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	85, 409
TspGWI	ACGGA	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.