MD11G1312900.v1.1

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003052
Physical Location & Seq
Reverse (-)
42541543 .. 42542408
866 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1312900.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGCGGCAGAGAAGCAAGTGATGGTGATCGGGGCGGACCAGAGCGAGCAGAGCCAGTACGCTCTCGAATGGACTTTGGACCACTTCTTCAAGCCCTTCGGCGGCGACAAAGCGCCCTTCAAGCTCATCATTGTCCACGCAAAGGTCCAGGTTTCCGCCACGGTCGGCTTGGCCGGCCCTGGAGCGGCGGAGATTCTGCCGATCGTGACCGATGTGGTTGTGGAGGTTGTGGAAGGAGATGCTAGGAACGTTCTGTGTGATGCTGTTGAAAGACACCACGCATCCATCTTGGTTGTGGGAAGTCATGGCTATGGAGCCATCAAAAGGGCAGTTCTGGGAAGTGTCAGCGACTACTGCGCCCATCACGCTCACAGCACCGTGATGATCGTGAAGAAGCCTAAAACCAAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

138

Amino Acids

14.65

Weight (kDa)

6.74

Isoelectric Point (pI)

21.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 8 - 131 1.7e-18 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 185
AciI CCGC 6 cut(s) 5, 35, 102, 156, 185, 188
AclI AACGTT 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 4 cut(s) 101, 142, 184, 324
AgsI TTSAA 3 cut(s) 91, 121, 269
AjnI CCWGG 2 cut(s) 147, 178
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AoxI GGCC 2 cut(s) 171, 175
AspLEI GCGC 2 cut(s) 115, 359
AspS9I GGNCC 4 cut(s) 37, 79, 145, 176
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 3 cut(s) 37, 79, 145
BccI CCATC 4 cut(s) 16, 293, 326, 369
BciT130I CCWGG 2 cut(s) 149, 180
BfaI CTAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 3 cut(s) 6, 103, 186
BlsI GCNGC 3 cut(s) 7, 104, 187
Bme1390I CCNGG 2 cut(s) 149, 180
Bme18I GGWCC 3 cut(s) 37, 79, 145
BmgT120I GGNCC 4 cut(s) 37, 79, 145, 176
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 149, 180
BmsI GCATC 3 cut(s) 229, 250, 290
BpmI CTGGAG 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 159, 178
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 142, 184, 324
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 2 cut(s) 149, 180
BseDI CCNNGG 2 cut(s) 159, 178
BseGI GGATG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 4 cut(s) 101, 142, 184, 324
BseNI ACTGG 1 cut(s) 55
Bsh1285I CGRYCG 2 cut(s) 165, 204
BshFI GGCC 2 cut(s) 173, 177
BsiEI CGRYCG 2 cut(s) 165, 204
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 4 cut(s) 101, 142, 184, 324
BsnI GGCC 2 cut(s) 173, 177
Bsp143I GATC 3 cut(s) 27, 201, 384
BspACI CCGC 6 cut(s) 5, 35, 102, 156, 185, 188
BspANI GGCC 2 cut(s) 173, 177
BspLI GGNNCC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 159, 178
BssMI GATC 3 cut(s) 27, 201, 384
Bst2UI CCWGG 2 cut(s) 149, 180
Bst4CI ACNGT 2 cut(s) 163, 379
BstC8I GCNNGC 2 cut(s) 47, 175
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 359
BstKTI GATC 3 cut(s) 30, 204, 387
BstMBI GATC 3 cut(s) 27, 201, 384
BstMCI CGRYCG 2 cut(s) 165, 204
BstMWI GCNNNNNNNGC 5 cut(s) 51, 121, 174, 354, 365
BstNI CCWGG 2 cut(s) 149, 180
BstSCI CCNGG 2 cut(s) 147, 178
BsuRI GGCC 2 cut(s) 173, 177
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 47, 175
CfoI GCGC 2 cut(s) 115, 359
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 4 cut(s) 37, 79, 145, 176
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 54, 94, 124, 168, 173, 177, 309, 317, 397
CviKI_1 RGCY 9 cut(s) 54, 94, 124, 168, 173, 177, 309, 317, 397
CviQI GTAC 1 cut(s) 58
DpnI GATC 3 cut(s) 29, 203, 386
DpnII GATC 3 cut(s) 27, 201, 384
EaeI YGGCCR 1 cut(s) 171
EciI GGCGGA 3 cut(s) 50, 145, 203
Eco47I GGWCC 3 cut(s) 37, 79, 145
EcoRII CCWGG 2 cut(s) 147, 178
FaeI CATG 1 cut(s) 308
FaiI YATR 2 cut(s) 306, 312
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 6, 103, 186
FokI GGATG 1 cut(s) 268
FseI GGCCGGCC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 6, 103, 186
FspBI CTAG 1 cut(s) 243
GlaI GCGC 2 cut(s) 114, 358
GluI GCNGC 3 cut(s) 6, 103, 186
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 2 cut(s) 173, 177
HapII CCGG 1 cut(s) 174
HhaI GCGC 2 cut(s) 115, 359
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 2 cut(s) 113, 357
HinP1I GCGC 2 cut(s) 113, 357
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 65, 205, 388
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 106, 127, 227
HpyCH4III ACNGT 2 cut(s) 163, 379
HpyCH4IV ACGT 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 121, 174, 354, 365
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 2 cut(s) 113, 357
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 27, 201, 384
LmnI GCTCC 2 cut(s) 182, 314
LpnPI CCDG 8 cut(s) 53, 68, 134, 161, 165, 187, 192, 320
LweI GCATC 3 cut(s) 229, 250, 290
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 29, 203, 386
MbiI CCGCTC 1 cut(s) 185
MboI GATC 3 cut(s) 27, 201, 384
MboII GAAGA 2 cut(s) 79, 403
MnlI CCTC 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 173
MslI CAYNNNNRTG 2 cut(s) 309, 380
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 149, 180
MvaI CCWGG 2 cut(s) 149, 180
MwoI GCNNNNNNNGC 5 cut(s) 51, 121, 174, 354, 365
NaeI GCCGGC 1 cut(s) 175
NdeII GATC 3 cut(s) 27, 201, 384
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 3 cut(s) 7, 104, 187
Ple19I CGATCG 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 147, 178
PspGI CCWGG 2 cut(s) 147, 178
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 4 cut(s) 37, 79, 145, 176
PvuI CGATCG 1 cut(s) 204
RigI GGCCGGCC 1 cut(s) 177
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 309, 380
SatI GCNGC 3 cut(s) 6, 103, 186
Sau3AI GATC 3 cut(s) 27, 201, 384
Sau96I GGNCC 4 cut(s) 37, 79, 145, 176
ScrFI CCNGG 2 cut(s) 149, 180
SetI ASST 5 cut(s) 126, 147, 153, 228, 252
SfaNI GCATC 3 cut(s) 229, 250, 290
SinI GGWCC 3 cut(s) 37, 79, 145
SmiMI CAYNNNNRTG 2 cut(s) 309, 380
SsiI CCGC 6 cut(s) 5, 35, 102, 156, 185, 188
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 147, 178
TaaI ACNGT 2 cut(s) 163, 379
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 66
TaqII GACCGA 1 cut(s) 224
TauI GCSGC 3 cut(s) 8, 105, 188
TfiI GAWTC 1 cut(s) 193
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
VpaK11BI GGWCC 3 cut(s) 37, 79, 145
XcmI CCANNNNNNNNNTGG 2 cut(s) 166, 292
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.