RchiOBHm_Chr6g0293841

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003052
Physical Location & Seq
Forward (+)
56353972 .. 56355950
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26368

Sequence Viewer

Length: 480 bp
ATGGCAGAGAAGCAAGTGATGGTTGTGGCGGCCGACGAGAGCGAGCACAGCGCCTACGCTCTGGAGTGGACTCTGGAACACTTCGTCACCCCGTTCGGCCCCAACACGCCGTTCAAGCTCGTCATCGTCCACGCCAAGCCCATGCCTTCCTCTGTCGTCGGCCTCGCCGGTCCCGGCGCGGCGGAGGTTCTGCCGATTGTGGATGCTGATTTGAAGAGGCAGGCTGCCCGCGTTAGTGAGAAGGCCAAGGAATTTTGTGATTCTAAATCGATAAAAGATGTGGTCGTAGAGGTGATAGAAGGCGATGCCAGGAATGTACTCTGTGATGCTGTGGAAAGACACCATGCATCCGTCTTGGTTCTGGGTAGTCATGGCTATGGAGCCATCAAAAGGGCGGTTTTGGGAAGTGTAAGTGACTATTGTGCTCATCACGCTCACTGCAGTGTTATGATCGTGAAGAGGCCTAAGACCAAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

159

Amino Acids

17.14

Weight (kDa)

6.79

Isoelectric Point (pI)

25.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 153 1.4e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 179, 231
AciI CCGC 5 cut(s) 29, 179, 182, 229, 395
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 2 cut(s) 115, 214
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AleI CACNNNNGTG 1 cut(s) 441
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 2 cut(s) 48, 427
AoxI GGCC 5 cut(s) 30, 97, 160, 243, 461
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 53, 179
AspS9I GGNCC 2 cut(s) 98, 170
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 79, 304
AvaII GGWCC 1 cut(s) 170
Bbv12I GWGCWC 2 cut(s) 48, 427
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 13, 392
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 310
BcnI CCSGG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 439
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 3 cut(s) 30, 180, 225
BlsI GCNGC 3 cut(s) 31, 181, 226
Bme1390I CCNGG 2 cut(s) 174, 310
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 98, 170
BmiI GGNNCC 3 cut(s) 100, 172, 382
BmrFI CCNGG 2 cut(s) 174, 310
BmsI GCATC 4 cut(s) 193, 295, 316, 356
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 208, 347
BseLI CCNNNNNNNGG 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 179, 231
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 5 cut(s) 32, 99, 162, 245, 463
BshVI ATCGAT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 48, 427
BsiSI CCGG 2 cut(s) 168, 174
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 5 cut(s) 32, 99, 162, 245, 463
Bsp1286I GDGCHC 2 cut(s) 48, 427
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 5 cut(s) 29, 179, 182, 229, 395
BspANI GGCC 5 cut(s) 32, 99, 162, 245, 463
BspDI ATCGAT 1 cut(s) 269
BspFNI CGCG 2 cut(s) 179, 231
BspLI GGNNCC 3 cut(s) 100, 172, 382
BspMAI CTGCAG 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 310
Bst6I CTCTTC 2 cut(s) 209, 452
BstC8I GCNNGC 3 cut(s) 44, 222, 229
BstDEI CTNAG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 208, 347
BstFNI CGCG 2 cut(s) 179, 231
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 179
BstKTI GATC 1 cut(s) 453
BstMBI GATC 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 48, 115, 431
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 172, 308
BstSFI CTRYAG 1 cut(s) 439
BstUI CGCG 2 cut(s) 179, 231
BstV1I GCAGC 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 269
BsuRI GGCC 5 cut(s) 32, 99, 162, 245, 463
BsuTUI ATCGAT 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 208, 347
BtsI GCAGTG 2 cut(s) 436, 448
BtsIMutI CAGTG 2 cut(s) 436, 448
Cac8I GCNNGC 3 cut(s) 44, 222, 229
CfoI GCGC 2 cut(s) 53, 179
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 98, 170
ClaI ATCGAT 1 cut(s) 269
Csp6I GTAC 1 cut(s) 317
CviAII CATG 3 cut(s) 142, 344, 371
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 465
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 209, 452
EarI CTCTTC 2 cut(s) 209, 452
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 145, 347, 374
FaiI YATR 5 cut(s) 143, 345, 372, 378, 449
FaqI GGGAC 1 cut(s) 156
FatI CATG 3 cut(s) 141, 343, 370
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 30, 180, 225
FokI GGATG 2 cut(s) 215, 334
Fsp4HI GCNGC 3 cut(s) 30, 180, 225
GlaI GCGC 2 cut(s) 52, 178
GluI GCNGC 3 cut(s) 30, 180, 225
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 5 cut(s) 32, 99, 162, 245, 463
HapII CCGG 2 cut(s) 168, 174
HhaI GCGC 2 cut(s) 53, 179
Hin1II CATG 3 cut(s) 145, 347, 374
Hin6I GCGC 2 cut(s) 51, 177
HinP1I GCGC 2 cut(s) 51, 177
HinfI GANTC 2 cut(s) 70, 260
HpaII CCGG 2 cut(s) 168, 174
HphI GGTGA 2 cut(s) 79, 304
Hpy166II GTNNAC 2 cut(s) 69, 130
Hpy188III TCNNGA 3 cut(s) 62, 74, 454
Hpy8I GTNNAC 2 cut(s) 69, 130
Hpy99I CGWCG 2 cut(s) 38, 161
HpyAV CCTTC 3 cut(s) 156, 235, 293
HpyCH4V TGCA 2 cut(s) 347, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 115, 431
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 3 cut(s) 145, 347, 374
HspAI GCGC 2 cut(s) 51, 177
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 8 cut(s) 47, 59, 181, 187, 206, 295, 322, 347
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 4 cut(s) 193, 295, 316, 356
MaeIII GTNAC 2 cut(s) 85, 413
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 2 cut(s) 226, 469
MhlI GDGCHC 2 cut(s) 48, 427
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 6 cut(s) 160, 173, 178, 210, 283, 453
Mph1103I ATGCAT 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 375, 441
MspI CCGG 2 cut(s) 168, 174
MspR9I CCNGG 2 cut(s) 174, 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 2 cut(s) 179, 231
MwoI GCNNNNNNNGC 3 cut(s) 48, 115, 431
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 450
NlaIII CATG 3 cut(s) 145, 347, 374
NlaIV GGNNCC 3 cut(s) 100, 172, 382
NmuCI GTSAC 2 cut(s) 85, 413
NsiI ATGCAT 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 441
PceI AGGCCT 1 cut(s) 463
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 3 cut(s) 31, 181, 226
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 100, 172, 382
PspPI GGNCC 2 cut(s) 98, 170
PstI CTGCAG 1 cut(s) 443
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 375, 441
SatI GCNGC 3 cut(s) 30, 180, 225
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 98, 170
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 174, 310
SduI GDGCHC 2 cut(s) 48, 427
SetI ASST 3 cut(s) 120, 189, 294
SfaNI GCATC 4 cut(s) 193, 295, 316, 356
SfcI CTRYAG 1 cut(s) 439
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 375, 441
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 5 cut(s) 29, 179, 182, 229, 395
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 172, 308
StyI CCWWGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 269
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 32, 182
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 443, 448
TseFI GTSAC 2 cut(s) 85, 413
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 2 cut(s) 85, 413
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 2 cut(s) 443, 448
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.