Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003052

Physical Location & Seq

Genomic Coordinates Forward (+)

22794857 .. 22795974

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGGCAGGGAAGCAAGTGATGGTGATCGGGGCGGACGACAGCGAGGAGAGCCACTACGCTCTGGAATGGACTTTGGATCACTTCTTCAAGCCTTTCGGCGGCGACACATCTCCGTTCAAGCTCATCATCGTCCACGCCAAGCCATCGGTTTCCTCCGTCGTTGGCTTCGTCGGCACCGCAGGGGCGGGGGTTCTGCCGATCGTGGACGCTGATTTGAAGAAGATGGCTGCCCGTGTAACTGAGAAGGCCAAGGAATTTTGCGCTTCTAAATCGGTGACCGATGTGGTCGTGGAGGTTATGGAAGGAGATGCTAGGAACGTTCTGTGTGAGGCTGCTGAAAGACACCAGGCATCCATCTTGGTTGTGGGAAGCCATGGCTATGGAGCCATCAAAAGGGCGTTTTTGGGAAGTGTAAGCGACTACTGCGCTCATCAAGCGCACTGCTCCGTGATGATTGTGAAGAAGCCTAAAACCCAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.17

Weight (kDa)

6.7

Isoelectric Point (pI)

19.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47710
fragaria_vesca	FvH4_2g25600 FvH4_4g18260
malus_domestica	MD03G1287100.v1.1 MD03G1287200.v1.1 MD03G1287300.v1.1 MD11G1310900.v1.1 MD11G1311000.v1.1 MD11G1312900.v1.1 MD16G1167500.v1.1
prunus_persica	Prupe.1G135000_v2.0.a1 Prupe.8G256700_v2.0.a1 Prupe.8G260100_v2.0.a1 Prupe.8G260400_v2.0.a1
pyrus_communis	pycom03g22730 pycom03g22740 pycom11g27160 pycom11g27170
rosa_chinensis	RchiOBHm_Chr4g0422431 RchiOBHm_Chr6g0293841
rosa_laevigata	RLG00000007610 RLG00000011918
rosa_multiflora	Rmu_ssc0000470.1_g000001 Rmu_ssc0000477.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364530 Rroxscaffold_7G00173860
rosa_rugosa	Rorug04G0180200 Rorug06G0238200
rosa_samantha	Rh4AG239900 Rh4BG243100 Rh4CG254400 Rh4DG238600 Rh6AG351900 Rh6BG358700 Rh6CG366000
rosa_wichuraiana	Rw0G009250 Rw4G020700 Rw6G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	5 cut(s)	5, 35, 102, 180, 188
AclI	AACGTT	1 cut(s)	321
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	101, 396
AgsI	TTSAA	3 cut(s)	91, 121, 220
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	230, 335
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	266, 431, 442
AsuHPI	GGTGA	2 cut(s)	37, 289
BanI	GGYRCC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	217, 322
BccI	CCATC	5 cut(s)	16, 154, 220, 365, 398
BciT130I	CCWGG	1 cut(s)	350
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	4 cut(s)	6, 103, 231, 336
BlsI	GCNGC	4 cut(s)	7, 104, 232, 337
Bme1390I	CCNGG	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	178, 388
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	301, 362
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	252, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 396
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	252, 376
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	101, 396
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	217, 322
BseYI	CCCAGC	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	101, 396
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	27, 79, 201
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	5 cut(s)	5, 35, 102, 180, 188
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	178, 388
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	252, 376
BssMI	GATC	3 cut(s)	27, 79, 201
BssT1I	CCWWGG	2 cut(s)	252, 376
Bst2UI	CCWGG	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	376
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	353
BstHHI	GCGC	3 cut(s)	266, 431, 442
BstKTI	GATC	3 cut(s)	30, 82, 204
BstMBI	GATC	3 cut(s)	27, 79, 201
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 174, 426, 437
BstNI	CCWGG	1 cut(s)	350
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	217, 322
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	442, 481
CfoI	GCGC	3 cut(s)	266, 431, 442
CseI	GACGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	29, 81, 203
DpnII	GATC	3 cut(s)	27, 79, 201
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	252, 376
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	252, 376
ErhI	CCWWGG	2 cut(s)	252, 376
FaeI	CATG	1 cut(s)	380
FaiI	YATR	3 cut(s)	302, 378, 384
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	6, 103, 231, 336
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	4 cut(s)	6, 103, 231, 336
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	3 cut(s)	265, 430, 441
GluI	GCNGC	4 cut(s)	6, 103, 231, 336
GsaI	CCCAGC	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	251
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	3 cut(s)	266, 431, 442
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	3 cut(s)	264, 429, 440
HinP1I	GCGC	3 cut(s)	264, 429, 440
HphI	GGTGA	2 cut(s)	37, 289
Hpy166II	GTNNAC	2 cut(s)	136, 208
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	136, 208
Hpy99I	CGWCG	2 cut(s)	164, 176
HpyAV	CCTTC	2 cut(s)	241, 299
HpyCH4IV	ACGT	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 174, 426, 437
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	3 cut(s)	264, 429, 440
Kzo9I	GATC	3 cut(s)	27, 79, 201
LmnI	GCTCC	2 cut(s)	386, 452
LpnPI	CCDG	4 cut(s)	50, 168, 335, 362
Lsp1109I	GCAGC	2 cut(s)	217, 322
LweI	GCATC	2 cut(s)	301, 362
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	238, 277
MalI	GATC	3 cut(s)	29, 81, 203
MboI	GATC	3 cut(s)	27, 79, 201
MboII	GAAGA	4 cut(s)	79, 232, 235, 475
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	4 cut(s)	40, 166, 289, 325
MslI	CAYNNNNRTG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	51, 174, 426, 437
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	27, 79, 201
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	178, 388
NmuCI	GTSAC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 168
PkrI	GCNGC	4 cut(s)	7, 104, 232, 337
Ple19I	CGATCG	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	348
PspEI	GGTNACC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	178, 388
PvuI	CGATCG	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	381
SatI	GCNGC	4 cut(s)	6, 103, 231, 336
Sau3AI	GATC	3 cut(s)	27, 79, 201
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	3 cut(s)	126, 300, 324
SfaNI	GCATC	2 cut(s)	301, 362
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	5 cut(s)	5, 35, 102, 180, 188
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	252, 376
TaiI	ACGT	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	257
TauI	GCSGC	2 cut(s)	8, 105
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	230, 335
Tsp45I	GTSAC	1 cut(s)	277
TspGWI	ACGGA	3 cut(s)	105, 148, 439
TspRI	CASTG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.