Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Forward (+)

3727771 .. 3729059

Gene Structure 1289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCGACTCCAACTCCATCTCTATCTCCTCCTCCATTGAATCTCTGGATAATCTTATCAGAATCAAAACGAATCATCAACGCACACTCACGTCACTTCCTAGCTCTCTCCGTTCTCTTCCTCCTCCCTCTCTGCTTCTCCATCACAGTTTACCCTTCCGTCTTCCTTCTCATCACCGATCAATCATCCGCTTCTCACAACACCGTCTCTCTCCTCCGCGGCGGACTCCACAACAACAACGATGATGACATCGATACCAAAACAACGGTCTTACTTGTAATCGGTTACATCGTTGTTATCACCGTCTTCAATCTCTTAGCTATTGGATCAATCGCTTATAGTGTGTTTCAAGGATTCTATGGTAGACCTGTGAAATTGAACTCTGCAGTGAAATCGAGCTTCGCTTCGTTTTTACCTCTTCTCGCTACTTTGACCTCATCGAATCTTATAGTTTTAGGGGGTTTTCTGATTCCAGGGATTTTAGCTTTCTTGTTGGTTAAGCTTATTGAGACCATTCCCGGTGTAGAATTCGATTACGCCTCTTCGTATTTCCAAGGTTTCGTAACCCTAGTAACGATTATCTCGATTGCGATTGCAGTTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTTGTTGTTGTTGAATCAGCTTGGGGTATAACACCGTTGAAGAGAAGTAAACGCTTGGTTAAAGGAATGAAATGTGCTTCTTTGTCGATTATCTTCTTCTTCGCTTCAACGGAATCGATTCTCGTTTGGATTAGTACCTTAGCCGCCTATGCTCAGCTCAACGATAACGAGAATGGTGGGAAGTCGTGGACAGATGCTTTCTTTGTGGTACAGATTGTGATCACGTCTGCGTTTCTAACGCTGTTGACGTTGTATAATCTTGCGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTTCATGGTGAGCTTGTTTGGGAGATAGCCGAAGAGTTTGCTAGAGAATATGTTAGCTTGCCTTTTGATGATGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

38.25

Weight (kDa)

6.59

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	219
AciI	CCGC	6 cut(s)	189, 217, 219, 222, 777, 896
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	527
AfaI	GTAC	2 cut(s)	769, 843
AgsI	TTSAA	7 cut(s)	40, 310, 350, 379, 647, 673, 741
AjiI	CACGTC	2 cut(s)	92, 858
AjnI	CCWGG	1 cut(s)	472
Alw26I	GTCTC	3 cut(s)	211, 503, 1027
AlwI	GGATC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	527
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
Asp700I	GAANNNNTTC	1 cut(s)	750
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	3 cut(s)	166, 292, 950
BbsI	GAAGAC	2 cut(s)	154, 298
BccI	CCATC	3 cut(s)	25, 149, 995
BcgI	CGANNNNNNTGC	4 cut(s)	375, 409, 950, 984
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	3 cut(s)	211, 503, 1027
BfaI	CTAG	3 cut(s)	101, 569, 972
BfmI	CTRYAG	2 cut(s)	384, 1026
BisI	GCNGC	3 cut(s)	220, 777, 897
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	3 cut(s)	221, 778, 898
Bme1390I	CCNGG	2 cut(s)	474, 519
BmgBI	CACGTC	2 cut(s)	92, 858
BmrFI	CCNGG	2 cut(s)	474, 519
BmsI	GCATC	1 cut(s)	817
BpiI	GAAGAC	2 cut(s)	154, 298
Bpu10I	CCTNAGC	1 cut(s)	772
Bpu1102I	GCTNAGC	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	519
Bsa29I	ATCGAT	2 cut(s)	252, 749
BsaBI	GATNNNNATC	1 cut(s)	851
BsaI	GGTCTC	2 cut(s)	503, 1027
BsaJI	CCNNGG	3 cut(s)	217, 473, 553
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	851
BseBI	CCWGG	1 cut(s)	474
BseCI	ATCGAT	2 cut(s)	252, 749
BseDI	CCNNGG	3 cut(s)	217, 473, 553
BseGI	GGATG	1 cut(s)	185
BseJI	GATNNNNATC	1 cut(s)	851
BseMII	CTCAG	1 cut(s)	800
BseRI	GAGGAG	4 cut(s)	18, 21, 113, 203
Bsh1236I	CGCG	1 cut(s)	219
BshVI	ATCGAT	2 cut(s)	252, 749
BsiSI	CCGG	1 cut(s)	519
BsmAI	GTCTC	3 cut(s)	211, 503, 1027
BsmBI	CGTCTC	1 cut(s)	211
Bso31I	GGTCTC	2 cut(s)	503, 1027
Bsp143I	GATC	3 cut(s)	178, 326, 852
Bsp1720I	GCTNAGC	1 cut(s)	786
BspACI	CCGC	6 cut(s)	189, 217, 219, 222, 777, 896
BspCNI	CTCAG	1 cut(s)	799
BspDI	ATCGAT	2 cut(s)	252, 749
BspFNI	CGCG	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	334
BspTNI	GGTCTC	2 cut(s)	503, 1027
BssECI	CCNNGG	3 cut(s)	217, 473, 553
BssMI	GATC	3 cut(s)	178, 326, 852
BssT1I	CCWWGG	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	6 cut(s)	148, 205, 268, 304, 669, 907
Bst6I	CTCTTC	5 cut(s)	122, 423, 547, 668, 957
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	3 cut(s)	316, 772, 786
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	181, 329, 855
BstMAI	GTCTC	3 cut(s)	211, 503, 1027
BstMBI	GATC	3 cut(s)	178, 326, 852
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	472, 517
BstSFI	CTRYAG	2 cut(s)	384, 1026
BstUI	CGCG	1 cut(s)	219
BstV2I	GAAGAC	2 cut(s)	154, 298
Bsu15I	ATCGAT	2 cut(s)	252, 749
BsuTUI	ATCGAT	2 cut(s)	252, 749
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	2 cut(s)	92, 858
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	989
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	2 cut(s)	252, 749
Csp6I	GTAC	2 cut(s)	768, 842
CviAII	CATG	1 cut(s)	935
CviQI	GTAC	2 cut(s)	768, 842
DdeI	CTNAG	3 cut(s)	316, 772, 786
DpnI	GATC	3 cut(s)	180, 328, 854
DpnII	GATC	3 cut(s)	178, 326, 852
Eam1104I	CTCTTC	5 cut(s)	122, 423, 547, 668, 957
EarI	CTCTTC	5 cut(s)	122, 423, 547, 668, 957
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	553
Eco31I	GGTCTC	2 cut(s)	503, 1027
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	938
FatI	CATG	1 cut(s)	934
FbaI	TGATCA	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	220, 777, 897
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	3 cut(s)	220, 777, 897
FspBI	CTAG	3 cut(s)	101, 569, 972
GluI	GCNGC	3 cut(s)	220, 777, 897
HapII	CCGG	1 cut(s)	519
Hin1II	CATG	1 cut(s)	938
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	500
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	3 cut(s)	166, 292, 950
Hpy166II	GTNNAC	5 cut(s)	151, 365, 683, 822, 879
Hpy188I	TCNGA	3 cut(s)	61, 468, 1046
Hpy188III	TCNNGA	2 cut(s)	46, 583
Hpy8I	GTNNAC	5 cut(s)	151, 365, 683, 822, 879
HpyAV	CCTTC	2 cut(s)	165, 176
HpyCH4III	ACNGT	6 cut(s)	148, 205, 268, 304, 669, 907
HpyCH4IV	ACGT	3 cut(s)	91, 857, 881
HpyCH4V	TGCA	2 cut(s)	386, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	3 cut(s)	316, 772, 786
HpySE526I	ACGT	3 cut(s)	91, 857, 881
Hsp92II	CATG	1 cut(s)	938
Ksp22I	TGATCA	1 cut(s)	852
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	178, 326, 852
LpnPI	CCDG	5 cut(s)	31, 381, 459, 486, 532
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	3 cut(s)	101, 569, 972
MaeII	ACGT	3 cut(s)	91, 857, 881
MaeIII	GTNAC	4 cut(s)	92, 284, 562, 571
MalI	GATC	3 cut(s)	180, 328, 854
MboI	GATC	3 cut(s)	178, 326, 852
MluCI	AATT	3 cut(s)	374, 527, 613
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	498, 600, 693
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	2 cut(s)	474, 519
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	782
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	3 cut(s)	178, 326, 852
NlaIII	CATG	1 cut(s)	938
NmuCI	GTSAC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 581, 878
PdmI	GAANNNNTTC	1 cut(s)	750
PkrI	GCNGC	3 cut(s)	221, 778, 898
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	769, 843
RsaNI	GTAC	2 cut(s)	768, 842
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	498, 600, 693
SatI	GCNGC	3 cut(s)	220, 777, 897
Sau3AI	GATC	3 cut(s)	178, 326, 852
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	474, 519
SfaNI	GCATC	1 cut(s)	817
SfcI	CTRYAG	2 cut(s)	384, 1026
Sfr303I	CCGCGG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	374, 527, 613
SsiI	CCGC	6 cut(s)	189, 217, 219, 222, 777, 896
SspMI	CTAG	3 cut(s)	101, 569, 972
StyD4I	CCNGG	2 cut(s)	472, 517
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	6 cut(s)	148, 205, 268, 304, 669, 907
TaiI	ACGT	3 cut(s)	94, 860, 884
TaqI	TCGA	7 cut(s)	252, 395, 440, 531, 584, 719, 749
TasI	AATT	3 cut(s)	374, 527, 613
TauI	GCSGC	3 cut(s)	222, 779, 899
Tru1I	TTAA	3 cut(s)	498, 600, 693
Tru9I	TTAA	3 cut(s)	498, 600, 693
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	716, 923
TspGWI	ACGGA	3 cut(s)	100, 148, 758
TspRI	CASTG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	3 cut(s)	101, 569, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.