Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

4705654 .. 4706245

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1066700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAACCCCATCTCCGCCTCTAACCGTTTTCACAGTCCTCAACGAATCCAAGCGCATAGTCAACGCCCACTCCCGCCACTTCTTAGCCCTCTCAGTCCTCTTCCTCCTCCCTCTCGCCTTCTCCTCCACCGTCTACCCCACCATCCAGAACCTTCTCGCCGATCGAGTCAGAGACAACCCCAAGCTATTCCTCGAAATCTCAACTTTGGACGCCCAACGGCGCCAACCCATCATCCCCGCCAAAACCCTTCTTGTCGCCCTCGCTTTCTCCCTCTTCGCCGTCGTCTTCTCTCTCTGCGCCCTGGGGTCGATCACTTACAGTGTGTTTCACGGATTCTATGGCCGGCCGGTTAAGCTCGTCTCCGCCGTCAAATCCGTCGCCTCCTCCTTCCTTCCCCTGTTGGGTACTGCTCTAATTTCCCAGATCCTCATTTTATTGGTTTTTATTCTTTTCGGGCTGTTCGTGTTCTTGGTGGTTCGCAGCGCTGAGCTTATGGGATTTGAAATTGAGTACTATTCGCCTTATTTCATTGGGTTTGTAGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.2

Weight (kDa)

9.61

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	4 cut(s)	17, 76, 240, 366
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	2 cut(s)	343, 347
AcyI	GRCGYC	2 cut(s)	213, 223
AfaI	GTAC	2 cut(s)	409, 515
AfeI	AGCGCT	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	3 cut(s)	187, 358, 493
AluI	AGCT	3 cut(s)	187, 358, 493
Alw26I	GTCTC	2 cut(s)	168, 367
AlwI	GGATC	1 cut(s)	421
Aor51HI	AGCGCT	1 cut(s)	487
AoxI	GGCC	2 cut(s)	343, 347
ApeKI	GCWGC	1 cut(s)	483
AspLEI	GCGC	4 cut(s)	57, 225, 302, 488
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	495
BccI	CCATC	3 cut(s)	19, 152, 239
BceAI	ACGGC	3 cut(s)	236, 266, 353
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	168, 367
BfoI	RGCGCY	2 cut(s)	226, 489
BisI	GCNGC	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	485
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	489
BsaHI	GRCGYC	2 cut(s)	213, 223
BsaJI	CCNNGG	2 cut(s)	303, 304
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse118I	RCCGGY	2 cut(s)	345, 349
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	303, 304
BseGI	GGATG	2 cut(s)	144, 234
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	108, 480
BseRI	GAGGAG	3 cut(s)	98, 115, 376
BseX3I	CGGCCG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	495
Bsh1285I	CGRYCG	2 cut(s)	166, 350
BshFI	GGCC	2 cut(s)	345, 349
BshNI	GGYRCC	1 cut(s)	222
BsiEI	CGRYCG	2 cut(s)	166, 350
BsiSI	CCGG	2 cut(s)	346, 350
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	168, 367
BsmBI	CGTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	345, 349
Bsp143I	GATC	3 cut(s)	163, 312, 426
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	4 cut(s)	17, 76, 240, 366
BspANI	GGCC	2 cut(s)	345, 349
BspCNI	CTCAG	2 cut(s)	107, 481
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	222
BsrFI	RCCGGY	2 cut(s)	345, 349
BssAI	RCCGGY	2 cut(s)	345, 349
BssECI	CCNNGG	2 cut(s)	303, 304
BssMI	GATC	3 cut(s)	163, 312, 426
BssNI	GRCGYC	2 cut(s)	213, 223
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	4 cut(s)	28, 37, 133, 323
Bst6I	CTCTTC	2 cut(s)	107, 281
BstACI	GRCGYC	2 cut(s)	213, 223
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	3 cut(s)	85, 94, 489
BstF5I	GGATG	2 cut(s)	144, 234
BstH2I	RGCGCY	2 cut(s)	226, 489
BstHHI	GCGC	4 cut(s)	57, 225, 302, 488
BstKTI	GATC	3 cut(s)	166, 315, 429
BstMAI	GTCTC	2 cut(s)	168, 367
BstMBI	GATC	3 cut(s)	163, 312, 426
BstMCI	CGRYCG	2 cut(s)	166, 350
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BstZI	CGGCCG	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	345, 349
BtsCI	GGATG	2 cut(s)	144, 234
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	4 cut(s)	57, 225, 302, 488
Cfr10I	RCCGGY	2 cut(s)	345, 349
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	408, 514
CviJI	RGCY	7 cut(s)	89, 187, 345, 349, 358, 460, 493
CviKI_1	RGCY	7 cut(s)	89, 187, 345, 349, 358, 460, 493
CviQI	GTAC	2 cut(s)	408, 514
DdeI	CTNAG	3 cut(s)	85, 94, 489
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	3 cut(s)	165, 314, 428
DpnII	GATC	3 cut(s)	163, 312, 426
EaeI	YGGCCR	2 cut(s)	343, 347
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	107, 281
EarI	CTCTTC	2 cut(s)	107, 281
EciI	GGCGGA	2 cut(s)	6, 355
EclXI	CGGCCG	1 cut(s)	347
Eco47III	AGCGCT	1 cut(s)	487
Eco52I	CGGCCG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	367
FaiI	YATR	3 cut(s)	59, 342, 497
FauI	CCCGC	2 cut(s)	83, 247
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	2 cut(s)	131, 221
FseI	GGCCGGCC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	484
GlaI	GCGC	4 cut(s)	56, 224, 301, 487
GluI	GCNGC	1 cut(s)	484
HaeII	RGCGCY	2 cut(s)	226, 489
HaeIII	GGCC	2 cut(s)	345, 349
HapII	CCGG	2 cut(s)	346, 350
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	4 cut(s)	57, 225, 302, 488
Hin1I	GRCGYC	2 cut(s)	213, 223
Hin6I	GCGC	4 cut(s)	55, 223, 300, 486
HinP1I	GCGC	4 cut(s)	55, 223, 300, 486
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	47, 168, 336
HpaII	CCGG	2 cut(s)	346, 350
Hpy166II	GTNNAC	2 cut(s)	64, 136
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	64, 136
Hpy99I	CGWCG	2 cut(s)	287, 383
HpyAV	CCTTC	5 cut(s)	130, 164, 260, 400, 404
HpyCH4III	ACNGT	4 cut(s)	28, 37, 133, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	85, 94, 489
Hsp92I	GRCGYC	2 cut(s)	213, 223
HspAI	GCGC	4 cut(s)	55, 223, 300, 486
KasI	GGCGCC	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	163, 312, 426
LpnPI	CCDG	7 cut(s)	161, 290, 317, 359, 363, 413, 437
Lsp1109I	GCAGC	1 cut(s)	495
MalI	GATC	3 cut(s)	165, 314, 428
MboI	GATC	3 cut(s)	163, 312, 426
MboII	GAAGA	3 cut(s)	94, 268, 280
MflI	RGATCY	1 cut(s)	426
MluCI	AATT	2 cut(s)	417, 507
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	177
MroNI	GCCGGC	1 cut(s)	345
MseI	TTAA	2 cut(s)	354, 550
MspI	CCGG	2 cut(s)	346, 350
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	355
NaeI	GCCGGC	1 cut(s)	347
NarI	GGCGCC	1 cut(s)	223
NdeII	GATC	3 cut(s)	163, 312, 426
NgoMIV	GCCGGC	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	224
PasI	CCCWGGG	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 462
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	47, 336
PkrI	GCNGC	1 cut(s)	485
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	426
PvuI	CGATCG	1 cut(s)	166
RigI	GGCCGGCC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	409, 515
RsaNI	GTAC	2 cut(s)	408, 514
SaqAI	TTAA	2 cut(s)	354, 550
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	3 cut(s)	163, 312, 426
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	4 cut(s)	156, 189, 360, 495
SfoI	GGCGCC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	417, 507
SsiI	CCGC	4 cut(s)	17, 76, 240, 366
SspDI	GGCGCC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	28, 37, 133, 323
TaqI	TCGA	3 cut(s)	166, 195, 311
TasI	AATT	2 cut(s)	417, 507
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	2 cut(s)	47, 336
Tru1I	TTAA	2 cut(s)	354, 550
Tru9I	TTAA	2 cut(s)	354, 550
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	1 cut(s)	483
TspDTI	ATGAA	1 cut(s)	520
TspGWI	ACGGA	2 cut(s)	348, 367
TspRI	CASTG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	135
ZrmI	AGTACT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.