pycom12g09400

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
11354094 .. 11354405
312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g09400.1

Sequence Viewer

Length: 312 bp
ATGGTTTTGCTTTATCTTCAAGTGCTCTGGACTCTGGCTTCTGTGGTGGTTGTGTTGGAATCCACTTGGTGTTTCAATTCCTTGATTCGAAGCGCGAGGCTGGTCAAGGGAGCGGGGACGATTGCGGTATCCTTGATGCTGGTTTTTGGATGTCTTTCTGGGGTTTTAGGGGTGTGTAGCTGGGTTTTGGAAATGGGGATGAATGAGGCTACTAGGTGGAAGAATTGGGGACTTGCAGTGCTATTAGGAGTGACTACTGTTTTCCTAATGCTACTTATCATCCACATTGCTGCGGCAAAGACGGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.17

Weight (kDa)

9.06

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 113, 125, 293
AdeI CACNNNGTG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 20, 76
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 139
BfaI CTAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 2 cut(s) 291, 294
BlsI GCNGC 2 cut(s) 292, 295
BmsI GCATC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 285
BseGI GGATG 3 cut(s) 155, 204, 279
BseMI GCAATG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 2 cut(s) 130, 243
BsmFI GGGAC 2 cut(s) 130, 243
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 27
BspACI CCGC 3 cut(s) 113, 125, 293
BspFNI CGCG 1 cut(s) 95
BspT104I TTCGAA 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 259
BstBI TTCGAA 1 cut(s) 88
BstF5I GGATG 3 cut(s) 155, 204, 279
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 277
BsuI GTATCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 155, 204, 279
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 95
CviJI RGCY 4 cut(s) 38, 100, 180, 209
CviKI_1 RGCY 4 cut(s) 38, 100, 180, 209
DraIII CACNNNGTG 1 cut(s) 69
FaqI GGGAC 2 cut(s) 130, 243
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 291, 294
FokI GGATG 3 cut(s) 162, 211, 266
Fsp4HI GCNGC 2 cut(s) 291, 294
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 94
GluI GCNGC 2 cut(s) 291, 294
GsaI CCCAGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 95
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 3 cut(s) 31, 59, 85
Hpy188III TCNNGA 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HspAI GCGC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 13, 20, 86, 125, 144, 166
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 250
MbiI CCGCTC 1 cut(s) 113
MboII GAAGA 2 cut(s) 8, 232
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 76, 223
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 90, 199
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 250
NspV TTCGAA 1 cut(s) 88
PfeI GAWTC 2 cut(s) 59, 85
PkrI GCNGC 2 cut(s) 292, 295
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 180
SatI GCNGC 2 cut(s) 291, 294
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 27
SetI ASST 2 cut(s) 182, 218
SfaNI GCATC 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 88
Sse9I AATT 2 cut(s) 76, 223
SsiI CCGC 3 cut(s) 113, 125, 293
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 76, 223
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 59, 85
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 243
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.