Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Forward (+)

15558132 .. 15558527

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1099700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTTTTGCTTTATCTTCAAGTGCTCTGGACTCTGGCTCCTGTGGTGGTTGTGCTGGAATCCACTGGGGGTTTCAATTCCTTGATTCGAAGCGCGAGGCCGGTCAAGGGAGCGGGGACGATCGCGGTATCTTTGATGCTGGTTTTTGGATGTCTGTCTGGGGTTTTACGGGTGTGTAGCTGGGTTTTGGAAATGGGGATTAATGAGGCTACTAGGTGGAAGAATTGGGGACTTGCAGTGCTATTAGGAGTGACTACTGTTTTCCTAATGTTACTTATCCTCCACAATGCTGCGACAAATACGGCGTTGTACCTGCATTGTAAGGCTGCACATGGTGAAGAGTTTGCTGATAGCTGTGATCATTTTCCCTTGCTCGTGGATGATGGAAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.17

Weight (kDa)

6.01

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	2 cut(s)	95, 125
AciI	CCGC	2 cut(s)	113, 125
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	20, 76
AluBI	AGCT	2 cut(s)	180, 354
AluI	AGCT	2 cut(s)	180, 354
Alw21I	GWGCWC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	290, 326
AseI	ATTAAT	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	88
BauI	CACGAG	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	277, 313
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	358
BfaI	CTAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	291, 327
BlsI	GCNGC	2 cut(s)	292, 328
BmiI	GGNNCC	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	88
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	155, 385
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	277, 313
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	95, 125
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	130, 243
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	130, 243
BsnI	GGCC	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	120, 358
BspACI	CCGC	2 cut(s)	113, 125
BspANI	GGCC	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	95, 125
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	2 cut(s)	120, 358
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	155, 385
BstFNI	CGCG	2 cut(s)	95, 125
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	123, 361
BstMBI	GATC	2 cut(s)	120, 358
BstMCI	CGRYCG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	95, 125
BstV1I	GCAGC	2 cut(s)	277, 313
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	155, 385
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	63, 243
BveI	ACCTGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	6 cut(s)	38, 100, 180, 209, 326, 354
CviKI_1	RGCY	6 cut(s)	38, 100, 180, 209, 326, 354
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	2 cut(s)	122, 360
DpnII	GATC	2 cut(s)	120, 358
DraIII	CACNNNGTG	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	335
FaiI	YATR	1 cut(s)	333
FaqI	GGGAC	2 cut(s)	130, 243
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	291, 327
FokI	GGATG	2 cut(s)	162, 392
Fsp4HI	GCNGC	2 cut(s)	291, 327
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	2 cut(s)	291, 327
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	31, 59, 85
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	236, 316, 329
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	120, 358
LmnI	GCTCC	2 cut(s)	43, 110
Lsp1109I	GCAGC	2 cut(s)	277, 313
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	250, 270
MalI	GATC	2 cut(s)	122, 360
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	2 cut(s)	120, 358
MboII	GAAGA	3 cut(s)	8, 232, 350
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	76, 223, 388
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	3 cut(s)	90, 199, 290
MseI	TTAA	1 cut(s)	201
MspI	CCGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	95, 125
NdeII	GATC	2 cut(s)	120, 358
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	59, 85
PkrI	GCNGC	2 cut(s)	292, 328
Ple19I	CGATCG	1 cut(s)	123
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	39
PvuI	CGATCG	1 cut(s)	123
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	2 cut(s)	291, 327
Sau3AI	GATC	2 cut(s)	120, 358
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	182, 218, 315, 356
SfaNI	GCATC	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	88
Sse9I	AATT	3 cut(s)	76, 223, 388
SsiI	CCGC	2 cut(s)	113, 125
SspMI	CTAG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	76, 223, 388
TfiI	GAWTC	2 cut(s)	59, 85
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	70, 243
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	290, 326
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	2 cut(s)	70, 243
VspI	ATTAAT	1 cut(s)	201
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.