Rh4DG372300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002817
Physical Location & Seq
Reverse (-)
59041702 .. 59043710
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG372300.1

Sequence Viewer

Length: 1023 bp
ATGGCTTCTCCACCCCCAAACCTCTGGACCATGCTCACCGAATCGAAGCGCATCCTCACCGAATCGAAGCGCATCATCAACGCCCACTCCCGCCACTTCTTGGCCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCCTCCGTCGTCTACCCAACTCTCCACAACCTCATCGCCGAGCGTATACCGCACAATACCCAAAAATTCTTCTTCAGTATTGACCAACCCTCCTCCCTCCCGACCACCAAGACCCTACTCCTCGCTCTCGCTTTCGCCCTCTTCGTCTTCGTCTTCTCTCTCTTCGCTCTCGGCTCAATCACCTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCCGCTGTCCGATCCGTCAGGGTTTCGTTCTGGCCAGTATTGGGTACTGTTGTTGCTTCCCACATCGTGTTTTTGTTGGTTGTTCTTGTTGCTGTGCTCTTCTTGTTCTTGGTGGTTGGAGTTTTTGAGATGGCTGGCCTCGAAATGGAGTTCTCTTCGCCTTATTTCGTTGGGCTCTCTGCTGTGGTTGCCATCTCTGTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTAGCCGGTGTAGTCGCTGTGGTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCGAATCTGATCCGGGGAATGCGAGGGGTGGCGTTGTCGTTGGTGGTGTTTTTCGGGGCCTTGTCTGGGATTCTGGGATTCTGCAGCACGGTTTCGGAGTTGGGATTGGATGGGGCTACTGATGGGTGGAGGAATTGGAAGAGTCTGGCATTTGTGTTGCAGATTGTGGTGTTTTCGACGGCTCATATGCTGGTACTGCTCTATCATGCTGCTGCGAATACGGTGCTGTATATGTATTGCAAGGCTGTGCATGGAGAGCTTGCGTTGGAAATTGCTGAAGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCTATGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.43

Weight (kDa)

8.85

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AccI GTMKAC 2 cut(s) 150, 184
AccII CGCG 1 cut(s) 634
AciI CCGC 5 cut(s) 91, 188, 349, 369, 632
AclWI GGATC 2 cut(s) 372, 667
AcoI YGGCCR 2 cut(s) 346, 398
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 2 cut(s) 196, 960
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 2 cut(s) 412, 858
AfiI CCNNNNNNNGG 5 cut(s) 100, 407, 511, 638, 729
AgsI TTSAA 1 cut(s) 590
AluBI AGCT 1 cut(s) 922
AluI AGCT 1 cut(s) 922
Alw21I GWGCWC 1 cut(s) 465
AlwI GGATC 2 cut(s) 372, 667
AoxI GGCC 5 cut(s) 102, 346, 398, 502, 720
ApeKI GCWGC 3 cut(s) 747, 872, 875
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 2 cut(s) 51, 72
AspS9I GGNCC 3 cut(s) 27, 103, 720
AsuC2I CCSGG 2 cut(s) 353, 677
AsuHPI GGTGA 3 cut(s) 28, 49, 310
AvaII GGWCC 1 cut(s) 27
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BalI TGGCCA 1 cut(s) 400
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 4 cut(s) 109, 277, 283, 322
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 759, 859, 862
BccI CCATC 6 cut(s) 137, 490, 566, 767, 779, 974
BceAI ACGGC 2 cut(s) 352, 858
BcgI CGANNNNNNTGC 2 cut(s) 868, 902
BcnI CCSGG 2 cut(s) 353, 677
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 2 cut(s) 322, 745
BisI GCNGC 4 cut(s) 349, 748, 873, 876
BlsI GCNGC 4 cut(s) 350, 749, 874, 877
Bme1390I CCNGG 2 cut(s) 353, 677
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 27, 103, 720
BmiI GGNNCC 1 cut(s) 721
BmrFI CCNGG 2 cut(s) 353, 677
BmsI GCATC 2 cut(s) 60, 81
BpiI GAAGAC 4 cut(s) 109, 277, 283, 322
BpuMI CCSGG 2 cut(s) 353, 677
BsaJI CCNNGG 2 cut(s) 334, 676
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 212, 242
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 407, 511, 638, 729
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 334, 676
BseGI GGATG 2 cut(s) 51, 778
BseLI CCNNNNNNNGG 5 cut(s) 100, 407, 511, 638, 729
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 4 cut(s) 113, 130, 220, 248
BseXI GCAGC 3 cut(s) 759, 859, 862
Bsh1236I CGCG 1 cut(s) 634
BshFI GGCC 5 cut(s) 104, 348, 400, 504, 722
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 3 cut(s) 353, 609, 676
BslI CCNNNNNNNGG 5 cut(s) 100, 407, 511, 638, 729
BsmI GAATGC 1 cut(s) 687
BsnI GGCC 5 cut(s) 104, 348, 400, 504, 722
Bsp1286I GDGCHC 2 cut(s) 465, 543
Bsp143I GATC 2 cut(s) 377, 672
BspACI CCGC 5 cut(s) 91, 188, 349, 369, 632
BspANI GGCC 5 cut(s) 104, 348, 400, 504, 722
BspFNI CGCG 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 721
BspMAI CTGCAG 1 cut(s) 749
BspPI GGATC 2 cut(s) 372, 667
BspQI GCTCTTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 1 cut(s) 401
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 2 cut(s) 334, 676
BssMI GATC 2 cut(s) 377, 672
BssNAI GTATAC 1 cut(s) 185
Bst1107I GTATAC 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 415, 754, 886
Bst6I CTCTTC 6 cut(s) 284, 305, 470, 526, 797, 936
BstC8I GCNNGC 4 cut(s) 502, 924, 952, 968
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 51, 778
BstFNI CGCG 1 cut(s) 634
BstHHI GCGC 2 cut(s) 51, 72
BstKTI GATC 2 cut(s) 380, 675
BstMBI GATC 2 cut(s) 377, 672
BstMWI GCNNNNNNNGC 5 cut(s) 187, 345, 554, 859, 919
BstSCI CCNGG 2 cut(s) 351, 675
BstSFI CTRYAG 2 cut(s) 322, 745
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 3 cut(s) 759, 859, 862
BstV2I GAAGAC 4 cut(s) 109, 277, 283, 322
BstXI CCANNNNNNTGG 1 cut(s) 24
BstZ17I GTATAC 1 cut(s) 185
BsuRI GGCC 5 cut(s) 104, 348, 400, 504, 722
BtgI CCRYGG 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 51, 778
Cac8I GCNNGC 4 cut(s) 502, 924, 952, 968
CfoI GCGC 2 cut(s) 51, 72
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 3 cut(s) 27, 103, 720
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 411, 857
CviAII CATG 3 cut(s) 31, 869, 914
CviQI GTAC 2 cut(s) 411, 857
DpnI GATC 2 cut(s) 379, 674
DpnII GATC 2 cut(s) 377, 672
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 2 cut(s) 346, 398
Eam1104I CTCTTC 6 cut(s) 284, 305, 470, 526, 797, 936
EarI CTCTTC 6 cut(s) 284, 305, 470, 526, 797, 936
Eco24I GRGCYC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 2 cut(s) 196, 960
EcoO109I RGGNCCY 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 543
FaeI CATG 3 cut(s) 34, 872, 917
FatI CATG 3 cut(s) 30, 868, 913
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 849
FblI GTMKAC 2 cut(s) 150, 184
Fnu4HI GCNGC 4 cut(s) 349, 748, 873, 876
FokI GGATG 2 cut(s) 38, 785
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 4 cut(s) 349, 748, 873, 876
FspBI CTAG 1 cut(s) 605
GlaI GCGC 2 cut(s) 50, 71
GluI GCNGC 4 cut(s) 349, 748, 873, 876
HaeIII GGCC 5 cut(s) 104, 348, 400, 504, 722
HapII CCGG 3 cut(s) 353, 609, 676
HgaI GACGC 1 cut(s) 316
HhaI GCGC 2 cut(s) 51, 72
Hin1II CATG 3 cut(s) 34, 872, 917
Hin6I GCGC 2 cut(s) 49, 70
HinP1I GCGC 2 cut(s) 49, 70
HinfI GANTC 8 cut(s) 41, 62, 601, 655, 667, 733, 741, 805
HpaII CCGG 3 cut(s) 353, 609, 676
HphI GGTGA 3 cut(s) 28, 49, 310
Hpy166II GTNNAC 2 cut(s) 151, 185
Hpy188I TCNGA 4 cut(s) 377, 660, 672, 760
Hpy188III TCNNGA 2 cut(s) 25, 238
Hpy8I GTNNAC 2 cut(s) 151, 185
Hpy99I CGWCG 3 cut(s) 116, 149, 844
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 415, 754, 886
HpyCH4V TGCA 4 cut(s) 747, 823, 903, 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 345, 554, 859, 919
Hsp92II CATG 3 cut(s) 34, 872, 917
HspAI GCGC 2 cut(s) 49, 70
Kzo9I GATC 2 cut(s) 377, 672
LguI GCTCTTC 1 cut(s) 470
Lsp1109I GCAGC 3 cut(s) 759, 859, 862
LweI GCATC 2 cut(s) 60, 81
MaeI CTAG 1 cut(s) 605
MalI GATC 2 cut(s) 379, 674
MboI GATC 2 cut(s) 377, 672
MhlI GDGCHC 2 cut(s) 465, 543
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 4 cut(s) 203, 595, 796, 933
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 3 cut(s) 595, 664, 814
MmeI TCCRAC 3 cut(s) 463, 638, 909
Mox20I TGGCCA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 400
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 3 cut(s) 353, 609, 676
MspR9I CCNGG 2 cut(s) 353, 677
Mva1269I GAATGC 1 cut(s) 687
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 5 cut(s) 187, 345, 554, 859, 919
NciI CCSGG 2 cut(s) 353, 677
NdeI CATATG 1 cut(s) 849
NdeII GATC 2 cut(s) 377, 672
NlaIII CATG 3 cut(s) 34, 872, 917
NlaIV GGNNCC 1 cut(s) 721
NmeAIII GCCGAG 2 cut(s) 202, 288
PciSI GCTCTTC 1 cut(s) 470
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 624
PctI GAATGC 1 cut(s) 687
PfeI GAWTC 5 cut(s) 41, 62, 667, 733, 741
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 4 cut(s) 350, 749, 874, 877
PleI GAGTC 3 cut(s) 595, 663, 813
PpsI GAGTC 3 cut(s) 595, 663, 813
PspN4I GGNNCC 1 cut(s) 721
PspPI GGNCC 3 cut(s) 27, 103, 720
PstI CTGCAG 1 cut(s) 749
RsaI GTAC 2 cut(s) 412, 858
RsaNI GTAC 2 cut(s) 411, 857
RseI CAYNNNNRTG 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 4 cut(s) 349, 748, 873, 876
Sau3AI GATC 2 cut(s) 377, 672
Sau96I GGNCC 3 cut(s) 27, 103, 720
SchI GAGTC 3 cut(s) 595, 664, 814
ScrFI CCNGG 2 cut(s) 353, 677
SduI GDGCHC 2 cut(s) 465, 543
SetI ASST 4 cut(s) 24, 171, 323, 924
SfaNI GCATC 2 cut(s) 60, 81
SfcI CTRYAG 2 cut(s) 322, 745
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 563
Sse9I AATT 4 cut(s) 203, 595, 796, 933
SsiI CCGC 5 cut(s) 91, 188, 349, 369, 632
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 351, 675
TaaI ACNGT 3 cut(s) 415, 754, 886
TaqI TCGA 7 cut(s) 44, 65, 507, 627, 839, 975, 1018
TasI AATT 4 cut(s) 203, 595, 796, 933
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 5 cut(s) 41, 62, 667, 733, 741
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TseI GCWGC 3 cut(s) 747, 872, 875
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 3 cut(s) 100, 133, 370
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 150, 184
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.