Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00270

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

251530 .. 252719

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTTCTCCACCCCTAAACCTCTGGACCATCCTCACCGAATCGAAGCGCATCCTCACCGAATCGAAGCGCATCATCAACGCCCACTCCCGCCACTTCTTGGGCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCCTCCGTCGTCTACCCAACTCTCCACAACCTCATCGCCGATCGTATACCGCACAATTCCCAAAAATTCTTCGTCAGTATTGACCAACCCTCCTCCCTCCCCACCACCAAGACCCTACTCCTCGCTCTCGCTTTCGCCCTCTTCGTCTTCGTCTTCTCTCTCTTCGCTCTCGGCTCAATCACCTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCCGCTGTCCGATCCGTCAGGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTTGCTTCTCACATCGTGTTTTTGTTGGTTGTTCTTGTTGCTGTGCTCTTCTTGTTCTTGCTGGTTGGAGTTTTTGAGATGGTTGGCCTCGAAATGGAGTTCTCTTCGCCTTATTTCGTTGGGCTCTCTGTTGTGGTTGCCATCTCTGTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTAGCCGGTGTGGTCGCTGTGGTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCGAATCTGATCCTGGGAATGCGAGGGGTGGCGCTGTCGTTGGTGGTGTTTTTCGGGGCCTTGTCTGGGATTCTAGGATTCTGCAGCACGGTTTCGGAGCTGGGATTGGATGGGGCTACTGATGCTGATGGGTGGAGGAATTGGAAGAGTCTGGCATTTGTGTTGAAGATTGTGGTGTTTTCGACGGCTCATATGCTGGTACTGCTCTATCATGCTGCTGCCAATACGGTGCTGTATATGTATTGCAAGGCTGTGCATGGAGAGCTTGCGTTGGAAATTGCTGAAGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTCGTTTCGGTTGCCTATGTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

37.57

Weight (kDa)

8.5

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccI	GTMKAC	2 cut(s)	150, 184
AccII	CGCG	1 cut(s)	634
AciI	CCGC	5 cut(s)	91, 188, 349, 369, 632
AclWI	GGATC	2 cut(s)	372, 667
AcoI	YGGCCR	2 cut(s)	346, 398
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	966
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	412, 864
AfiI	CCNNNNNNNGG	5 cut(s)	100, 407, 511, 638, 729
AgsI	TTSAA	2 cut(s)	590, 829
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	2 cut(s)	763, 928
AluI	AGCT	2 cut(s)	763, 928
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	372, 667
AoxI	GGCC	5 cut(s)	103, 346, 398, 502, 720
ApeKI	GCWGC	3 cut(s)	747, 878, 881
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	3 cut(s)	51, 72, 697
AspS9I	GGNCC	3 cut(s)	27, 103, 720
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	28, 49, 310
AvaII	GGWCC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	543
BbsI	GAAGAC	4 cut(s)	109, 277, 283, 322
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	759, 865, 868
BccI	CCATC	7 cut(s)	38, 137, 490, 566, 767, 785, 980
BceAI	ACGGC	2 cut(s)	352, 864
BciT130I	CCWGG	1 cut(s)	677
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	2 cut(s)	605, 737
BfmI	CTRYAG	2 cut(s)	322, 745
BfoI	RGCGCY	1 cut(s)	698
BisI	GCNGC	4 cut(s)	349, 748, 879, 882
BlsI	GCNGC	4 cut(s)	350, 749, 880, 883
Bme1390I	CCNGG	2 cut(s)	353, 677
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	27, 103, 720
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	2 cut(s)	353, 677
BmsI	GCATC	3 cut(s)	60, 81, 775
BpiI	GAAGAC	4 cut(s)	109, 277, 283, 322
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	334, 676
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 212, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 407, 511, 638, 729
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	2 cut(s)	334, 676
BseGI	GGATG	3 cut(s)	30, 51, 778
BseLI	CCNNNNNNNGG	5 cut(s)	100, 407, 511, 638, 729
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	4 cut(s)	113, 130, 220, 248
BseXI	GCAGC	3 cut(s)	759, 865, 868
BseYI	CCCAGC	1 cut(s)	763
Bsh1236I	CGCG	1 cut(s)	634
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	5 cut(s)	105, 348, 400, 504, 722
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	353, 609
BslI	CCNNNNNNNGG	5 cut(s)	100, 407, 511, 638, 729
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	5 cut(s)	105, 348, 400, 504, 722
Bsp1286I	GDGCHC	2 cut(s)	465, 543
Bsp143I	GATC	3 cut(s)	178, 377, 672
BspACI	CCGC	5 cut(s)	91, 188, 349, 369, 632
BspANI	GGCC	5 cut(s)	105, 348, 400, 504, 722
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	721
BspMAI	CTGCAG	1 cut(s)	749
BspPI	GGATC	2 cut(s)	372, 667
BspQI	GCTCTTC	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	2 cut(s)	334, 676
BssMI	GATC	3 cut(s)	178, 377, 672
BssNAI	GTATAC	1 cut(s)	185
Bst1107I	GTATAC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	3 cut(s)	415, 754, 892
Bst6I	CTCTTC	6 cut(s)	284, 305, 470, 526, 803, 942
BstC8I	GCNNGC	3 cut(s)	930, 958, 974
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	30, 51, 778
BstFNI	CGCG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	3 cut(s)	51, 72, 697
BstKTI	GATC	3 cut(s)	181, 380, 675
BstMBI	GATC	3 cut(s)	178, 377, 672
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	4 cut(s)	345, 785, 865, 925
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	2 cut(s)	351, 675
BstSFI	CTRYAG	2 cut(s)	322, 745
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	3 cut(s)	759, 865, 868
BstV2I	GAAGAC	4 cut(s)	109, 277, 283, 322
BstZ17I	GTATAC	1 cut(s)	185
BsuRI	GGCC	5 cut(s)	105, 348, 400, 504, 722
BtgI	CCRYGG	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	30, 51, 778
Cac8I	GCNNGC	3 cut(s)	930, 958, 974
CfoI	GCGC	3 cut(s)	51, 72, 697
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	27, 103, 720
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	411, 863
CviAII	CATG	2 cut(s)	875, 920
CviQI	GTAC	2 cut(s)	411, 863
DpnI	GATC	3 cut(s)	180, 379, 674
DpnII	GATC	3 cut(s)	178, 377, 672
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	346, 398
Eam1104I	CTCTTC	6 cut(s)	284, 305, 470, 526, 803, 942
EarI	CTCTTC	6 cut(s)	284, 305, 470, 526, 803, 942
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	966
EcoO109I	RGGNCCY	1 cut(s)	720
EcoRII	CCWGG	1 cut(s)	675
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	2 cut(s)	878, 923
FatI	CATG	2 cut(s)	874, 919
FauI	CCCGC	1 cut(s)	98
FauNDI	CATATG	1 cut(s)	855
FblI	GTMKAC	2 cut(s)	150, 184
Fnu4HI	GCNGC	4 cut(s)	349, 748, 879, 882
FokI	GGATG	3 cut(s)	17, 38, 785
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	349, 748, 879, 882
FspBI	CTAG	2 cut(s)	605, 737
GlaI	GCGC	3 cut(s)	50, 71, 696
GluI	GCNGC	4 cut(s)	349, 748, 879, 882
GsaI	CCCAGC	1 cut(s)	767
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	5 cut(s)	105, 348, 400, 504, 722
HapII	CCGG	2 cut(s)	353, 609
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	3 cut(s)	51, 72, 697
Hin1II	CATG	2 cut(s)	878, 923
Hin6I	GCGC	3 cut(s)	49, 70, 695
HinP1I	GCGC	3 cut(s)	49, 70, 695
HinfI	GANTC	8 cut(s)	41, 62, 601, 655, 667, 733, 741, 811
HpaII	CCGG	2 cut(s)	353, 609
HphI	GGTGA	3 cut(s)	28, 49, 310
Hpy166II	GTNNAC	2 cut(s)	151, 185
Hpy188I	TCNGA	4 cut(s)	377, 660, 672, 760
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	2 cut(s)	151, 185
Hpy99I	CGWCG	3 cut(s)	116, 149, 850
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	415, 754, 892
HpyCH4V	TGCA	3 cut(s)	747, 909, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	345, 785, 865, 925
Hsp92II	CATG	2 cut(s)	878, 923
HspAI	GCGC	3 cut(s)	49, 70, 695
Kzo9I	GATC	3 cut(s)	178, 377, 672
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	3 cut(s)	759, 865, 868
LweI	GCATC	3 cut(s)	60, 81, 775
MaeI	CTAG	2 cut(s)	605, 737
MalI	GATC	3 cut(s)	180, 379, 674
MboI	GATC	3 cut(s)	178, 377, 672
MhlI	GDGCHC	2 cut(s)	465, 543
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	5 cut(s)	193, 203, 595, 802, 939
MluNI	TGGCCA	1 cut(s)	400
MlyI	GAGTC	3 cut(s)	595, 664, 820
MmeI	TCCRAC	3 cut(s)	463, 638, 915
Mox20I	TGGCCA	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	400
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	400
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	353, 609
MspR9I	CCNGG	2 cut(s)	353, 677
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	4 cut(s)	345, 785, 865, 925
NciI	CCSGG	1 cut(s)	353
NdeI	CATATG	1 cut(s)	855
NdeII	GATC	3 cut(s)	178, 377, 672
NlaIII	CATG	2 cut(s)	878, 923
NlaIV	GGNNCC	1 cut(s)	721
NmeAIII	GCCGAG	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 624
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	5 cut(s)	41, 62, 667, 733, 741
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	350, 749, 880, 883
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	595, 663, 819
PpsI	GAGTC	3 cut(s)	595, 663, 819
Psp6I	CCWGG	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	3 cut(s)	27, 103, 720
PstI	CTGCAG	1 cut(s)	749
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	412, 864
RsaNI	GTAC	2 cut(s)	411, 863
RseI	CAYNNNNRTG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	349, 748, 879, 882
Sau3AI	GATC	3 cut(s)	178, 377, 672
Sau96I	GGNCC	3 cut(s)	27, 103, 720
SchI	GAGTC	3 cut(s)	595, 664, 820
ScrFI	CCNGG	2 cut(s)	353, 677
SduI	GDGCHC	2 cut(s)	465, 543
SetI	ASST	5 cut(s)	24, 171, 323, 765, 930
SfaNI	GCATC	3 cut(s)	60, 81, 775
SfcI	CTRYAG	2 cut(s)	322, 745
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	193, 203, 595, 802, 939
SsiI	CCGC	5 cut(s)	91, 188, 349, 369, 632
SspMI	CTAG	2 cut(s)	605, 737
StyD4I	CCNGG	2 cut(s)	351, 675
TaaI	ACNGT	3 cut(s)	415, 754, 892
TaqI	TCGA	7 cut(s)	44, 65, 507, 627, 845, 981, 1024
TasI	AATT	5 cut(s)	193, 203, 595, 802, 939
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	5 cut(s)	41, 62, 667, 733, 741
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TseI	GCWGC	3 cut(s)	747, 878, 881
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	3 cut(s)	100, 133, 370
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	150, 184
XspI	CTAG	2 cut(s)	605, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.