Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

53282849 .. 53284837

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGACCCAGTCCAACAGTCCAACGGTCCAACCCATTCATCTCATTTCAGCTCCAACAAGCAACCCAAGTTGTCACTTCCATCCAAAACTGAAACTTCACCATCCTTCTTCCTCCTTTGGCTTCCTTCACCCGCAGCCAAACGACGACGTTTCTTCGGCCATGGCAACTCCGTCTCCACCCCTAAACCTCTGGACCTTCCTCACCGAATCGAAGCGCATCCTCACCGAATCGAAGCGCATCATCAACGCCCACTCCCGCCACTTCTTGGCCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCCTCCGTCGTCTACCCAACTCTCCACAACCTCATCGCCGATCGTATACCGCACAATTCCCAAAAATTCTTCTTAAGTATTGACCAACCCTCCTCCCTCCCCACCACCAAGACCCTACTCCTCGCTCTCGCTTTCGCCCTCTTCGTCTTCGTCCTCTCTCTCTTCGCTCTCGGCTCAATCACCTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCCGCTGTCCGATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTTGCTTCCCACATCGTGTTTTTGTTGGTTGTTCTTGTTGCTGGGCTGTTCTTGTTCTTGGTGGTTGGAGTCTTTGAGATGGTTGGGCTCGAAATGGAGTTCGCTTCGCCTTATTTCGTTGGGCTCTGTTTTGTGGTTGCCATCTCTGTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTAGCCGGTGTAGTCGCTGTGGTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCGAATCTGATCCAGGGAATGCGAGGGGTGGCGTTGTCGTTGGTGCTGTTTTTCGGGGCGTTGTCTGGGATTCTAGGATTCTGCAGCACGGTTTCGGAGTTGGGTTTGGATGGGGCTACTGATGGCTGGAGGAATTGGAAGAGTCTGGCATTTGTGTTGCAGATTGTGGTGTTTTCGACGGCGCATATGCTGGTACTGCTCTATCATGCTGCTGCGAATACGGTGCTGTATATGTATTGCAAGGCTGTGCATGGAGAGCTTGCATTGGAAATTGCTCAAGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCTATGTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

43.34

Weight (kDa)

8.63

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	2 cut(s)	315, 349
AccII	CGCG	1 cut(s)	799
AciI	CCGC	6 cut(s)	131, 256, 353, 514, 534, 797
AclWI	GGATC	2 cut(s)	537, 832
AcoI	YGGCCR	3 cut(s)	156, 511, 563
AcsI	RAATTY	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	2 cut(s)	577, 1023
AfiI	CCNNNNNNNGG	3 cut(s)	265, 572, 803
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	840
AluBI	AGCT	2 cut(s)	50, 1087
AluI	AGCT	2 cut(s)	50, 1087
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	537, 832
AoxI	GGCC	4 cut(s)	156, 267, 511, 563
ApeKI	GCWGC	4 cut(s)	133, 912, 1037, 1040
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	3 cut(s)	216, 237, 1012
AspS9I	GGNCC	3 cut(s)	25, 192, 268
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	5 cut(s)	89, 119, 193, 214, 475
AvaII	GGWCC	2 cut(s)	25, 192
BalI	TGGCCA	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	672, 708
BbsI	GAAGAC	3 cut(s)	274, 442, 487
BbvI	GCAGC	4 cut(s)	145, 924, 1024, 1027
BccI	CCATC	8 cut(s)	87, 108, 302, 655, 731, 932, 944, 1139
BceAI	ACGGC	2 cut(s)	517, 1023
BcgI	CGANNNNNNTGC	2 cut(s)	1033, 1067
BciT130I	CCWGG	1 cut(s)	842
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	2 cut(s)	770, 902
BfmI	CTRYAG	2 cut(s)	487, 910
BfrI	CTTAAG	1 cut(s)	376
BisI	GCNGC	5 cut(s)	134, 514, 913, 1038, 1041
BlsI	GCNGC	5 cut(s)	135, 515, 914, 1039, 1042
Bme1390I	CCNGG	2 cut(s)	518, 842
Bme18I	GGWCC	2 cut(s)	25, 192
BmgT120I	GGNCC	3 cut(s)	25, 192, 268
BmrFI	CCNGG	2 cut(s)	518, 842
BmsI	GCATC	2 cut(s)	225, 246
BpiI	GAAGAC	3 cut(s)	274, 442, 487
BpmI	CTGGAG	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	1089
BpuMI	CCSGG	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	159, 499, 841
BsaXI	ACNNNNNCTCC	6 cut(s)	157, 187, 236, 266, 377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 572, 803
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	2 cut(s)	7, 566
BseBI	CCWGG	1 cut(s)	842
BseDI	CCNNGG	3 cut(s)	159, 499, 841
BseGI	GGATG	4 cut(s)	79, 100, 216, 943
BseLI	CCNNNNNNNGG	3 cut(s)	265, 572, 803
BseNI	ACTGG	2 cut(s)	7, 566
BseRI	GAGGAG	4 cut(s)	278, 295, 385, 413
BseXI	GCAGC	4 cut(s)	145, 924, 1024, 1027
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	799
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	158, 269, 513, 565
BsiEI	CGRYCG	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	518, 774
BslI	CCNNNNNNNGG	3 cut(s)	265, 572, 803
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	4 cut(s)	158, 269, 513, 565
Bsp1286I	GDGCHC	2 cut(s)	672, 708
Bsp143I	GATC	3 cut(s)	343, 542, 837
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	6 cut(s)	131, 256, 353, 514, 534, 797
BspANI	GGCC	4 cut(s)	158, 269, 513, 565
BspFNI	CGCG	1 cut(s)	799
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	2 cut(s)	537, 832
BspTI	CTTAAG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	2 cut(s)	7, 566
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	159, 499, 841
BssMI	GATC	3 cut(s)	343, 542, 837
BssNAI	GTATAC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	5 cut(s)	17, 25, 580, 919, 1051
Bst6I	CTCTTC	3 cut(s)	449, 470, 962
BstAFI	CTTAAG	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	1089, 1117, 1133
BstDSI	CCRYGG	2 cut(s)	159, 499
BstF5I	GGATG	4 cut(s)	79, 100, 216, 943
BstFNI	CGCG	1 cut(s)	799
BstHHI	GCGC	3 cut(s)	216, 237, 1012
BstKTI	GATC	3 cut(s)	346, 545, 840
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	343, 542, 837
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	510, 1024, 1084
BstNI	CCWGG	1 cut(s)	842
BstSCI	CCNGG	2 cut(s)	516, 840
BstSFI	CTRYAG	2 cut(s)	487, 910
BstUI	CGCG	1 cut(s)	799
BstV1I	GCAGC	4 cut(s)	145, 924, 1024, 1027
BstV2I	GAAGAC	3 cut(s)	274, 442, 487
BstZ17I	GTATAC	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	158, 269, 513, 565
BtgI	CCRYGG	2 cut(s)	159, 499
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	79, 100, 216, 943
Cac8I	GCNNGC	3 cut(s)	1089, 1117, 1133
CfoI	GCGC	3 cut(s)	216, 237, 1012
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	3 cut(s)	25, 192, 268
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	576, 1022
CviAII	CATG	3 cut(s)	160, 1034, 1079
CviQI	GTAC	2 cut(s)	576, 1022
DpnI	GATC	3 cut(s)	345, 544, 839
DpnII	GATC	3 cut(s)	343, 542, 837
DraIII	CACNNNGTG	1 cut(s)	598
EaeI	YGGCCR	3 cut(s)	156, 511, 563
Eam1104I	CTCTTC	3 cut(s)	449, 470, 962
EarI	CTCTTC	3 cut(s)	449, 470, 962
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	672, 708
Eco47I	GGWCC	2 cut(s)	25, 192
EcoRII	CCWGG	1 cut(s)	840
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	672, 708
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	3 cut(s)	163, 1037, 1082
FatI	CATG	3 cut(s)	159, 1033, 1078
FauI	CCCGC	2 cut(s)	138, 263
FauNDI	CATATG	1 cut(s)	1014
FblI	GTMKAC	2 cut(s)	315, 349
Fnu4HI	GCNGC	5 cut(s)	134, 514, 913, 1038, 1041
FokI	GGATG	4 cut(s)	66, 87, 203, 950
FriOI	GRGCYC	2 cut(s)	672, 708
Fsp4HI	GCNGC	5 cut(s)	134, 514, 913, 1038, 1041
FspBI	CTAG	2 cut(s)	770, 902
GlaI	GCGC	3 cut(s)	215, 236, 1011
GluI	GCNGC	5 cut(s)	134, 514, 913, 1038, 1041
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	976
HaeIII	GGCC	4 cut(s)	158, 269, 513, 565
HapII	CCGG	2 cut(s)	518, 774
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	3 cut(s)	216, 237, 1012
Hin1II	CATG	3 cut(s)	163, 1037, 1082
Hin6I	GCGC	3 cut(s)	214, 235, 1010
HinP1I	GCGC	3 cut(s)	214, 235, 1010
HinfI	GANTC	9 cut(s)	206, 227, 651, 766, 820, 832, 898, 906, 970
HpaII	CCGG	2 cut(s)	518, 774
HphI	GGTGA	5 cut(s)	89, 119, 193, 214, 475
Hpy166II	GTNNAC	2 cut(s)	316, 350
Hpy188I	TCNGA	4 cut(s)	542, 825, 837, 925
Hpy188III	TCNNGA	2 cut(s)	190, 1106
Hpy8I	GTNNAC	2 cut(s)	316, 350
Hpy99I	CGWCG	5 cut(s)	146, 149, 281, 314, 1009
HpyAV	CCTTC	4 cut(s)	114, 134, 205, 310
HpyCH4III	ACNGT	5 cut(s)	17, 25, 580, 919, 1051
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	912, 988, 1068, 1078, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	510, 1024, 1084
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	163, 1037, 1082
HspAI	GCGC	3 cut(s)	214, 235, 1010
Kzo9I	GATC	3 cut(s)	343, 542, 837
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	145, 924, 1024, 1027
LweI	GCATC	2 cut(s)	225, 246
MaeI	CTAG	2 cut(s)	770, 902
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	3 cut(s)	345, 544, 839
MboI	GATC	3 cut(s)	343, 542, 837
MhlI	GDGCHC	2 cut(s)	672, 708
MlsI	TGGCCA	1 cut(s)	565
MluCI	AATT	5 cut(s)	358, 368, 760, 961, 1098
MluNI	TGGCCA	1 cut(s)	565
MlyI	GAGTC	4 cut(s)	660, 760, 829, 979
MmeI	TCCRAC	6 cut(s)	36, 44, 52, 77, 628, 803
Mox20I	TGGCCA	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	565
MseI	TTAA	2 cut(s)	377, 810
MslI	CAYNNNNRTG	1 cut(s)	728
Msp20I	TGGCCA	1 cut(s)	565
MspA1I	CMGCKG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	2 cut(s)	518, 774
MspR9I	CCNGG	2 cut(s)	518, 842
Mva1269I	GAATGC	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	842
MvnI	CGCG	1 cut(s)	799
MwoI	GCNNNNNNNGC	3 cut(s)	510, 1024, 1084
NciI	CCSGG	1 cut(s)	518
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	1014
NdeII	GATC	3 cut(s)	343, 542, 837
NlaIII	CATG	3 cut(s)	163, 1037, 1082
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 789
PctI	GAATGC	1 cut(s)	852
PfeI	GAWTC	5 cut(s)	206, 227, 832, 898, 906
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	5 cut(s)	135, 515, 914, 1039, 1042
Ple19I	CGATCG	1 cut(s)	346
PleI	GAGTC	4 cut(s)	659, 760, 828, 978
PpsI	GAGTC	4 cut(s)	659, 760, 828, 978
Psp6I	CCWGG	1 cut(s)	840
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	840
PspPI	GGNCC	3 cut(s)	25, 192, 268
PstI	CTGCAG	1 cut(s)	914
PsyI	GACNNNGTC	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	577, 1023
RsaNI	GTAC	2 cut(s)	576, 1022
RseI	CAYNNNNRTG	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	377, 810
SatI	GCNGC	5 cut(s)	134, 514, 913, 1038, 1041
Sau3AI	GATC	3 cut(s)	343, 542, 837
Sau96I	GGNCC	3 cut(s)	25, 192, 268
SchI	GAGTC	4 cut(s)	660, 760, 829, 979
ScrFI	CCNGG	2 cut(s)	518, 842
SduI	GDGCHC	2 cut(s)	672, 708
SetI	ASST	8 cut(s)	52, 150, 189, 197, 336, 488, 555, 1089
SfaNI	GCATC	2 cut(s)	225, 246
SfcI	CTRYAG	2 cut(s)	487, 910
SinI	GGWCC	2 cut(s)	25, 192
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	2 cut(s)	376, 1104
SmoI	CTYRAG	2 cut(s)	376, 1104
Sse9I	AATT	5 cut(s)	358, 368, 760, 961, 1098
SsiI	CCGC	6 cut(s)	131, 256, 353, 514, 534, 797
SspMI	CTAG	2 cut(s)	770, 902
StyD4I	CCNGG	2 cut(s)	516, 840
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	5 cut(s)	17, 25, 580, 919, 1051
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	7 cut(s)	209, 230, 672, 792, 1004, 1140, 1183
TasI	AATT	5 cut(s)	358, 368, 760, 961, 1098
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	5 cut(s)	206, 227, 832, 898, 906
Tru1I	TTAA	2 cut(s)	377, 810
Tru9I	TTAA	2 cut(s)	377, 810
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	4 cut(s)	133, 912, 1037, 1040
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	26, 517
TspGWI	ACGGA	4 cut(s)	159, 265, 298, 535
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	25, 192
XapI	RAATTY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmiI	GTMKAC	2 cut(s)	315, 349
XspI	CTAG	2 cut(s)	770, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.