Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

60248217 .. 60249214

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTCCTCCACCCCTAAACCTCTGGACCATCCTCACCGAATCGAAGCGCATCATCAACGCCCACTCCCGCCACTTCTTGGCCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCCTCCGTCGTCTACCCAACTCTCCACAACCTCATCGCCGATCCTATACCGCACAATTCCCAAAAATTCTTCAGTATTGACCAACCCTCCCCCTCCCCACCACCAAGACCCTACTCCTCGCACTCGCTTTCGCCCTCTTCGTCTTCGTCTTCTCTCTCTTCGCTCTCGGCTCAATCACCTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCGGCTGTTCAATCCGTCAAGGTTTCGTTCTGGCCAGTTTTGGATGGTTGGGCTCGAAATGGAGTTCTCTTCGCCTTATTTCGTTGGGCTCTGTCTTGTGGTTGCGATCTCTCTGTTTCTAGTTTTGTTGTATCTTCAAGTGAATTGGACTCTGGCCGGTGTAGTCGCTGTGGTCGAACCGCGTTGGGGGTTCAACGCATTGAGTCGGAGTGCGAATCTGATCCAGGGAATGCGAGGGGTGGCGTTGTCGTTGGTGGTGTTTTTCGGGGCGTTGTCTGGGATTCTAGGATTCTGCAGCACGGTTTCGGAGTTGGGTTTGGATGGGGCTACTGATGGGTGGAGGAATTGCAAGAGTCTGGCATTTGTGTTGAAGATTGTGGTGTTTTCGACGGCTCATATGCTGCTACTGCTCTATCATGCTGCTGCGAATACGGTGCTGTATATGTATTGCAAGGCTGTGCATGGAGAGCTTGCGTTGGAAATTGCTGAAGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCTATGTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

32.98

Weight (kDa)

8.35

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	523
AciI	CCGC	4 cut(s)	70, 167, 324, 521
AclWI	GGATC	2 cut(s)	152, 556
AcoI	YGGCCR	3 cut(s)	321, 373, 495
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	172, 849
AfiI	CCNNNNNNNGG	2 cut(s)	79, 527
AgsI	TTSAA	4 cut(s)	352, 479, 535, 712
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	1 cut(s)	811
AluI	AGCT	1 cut(s)	811
AlwI	GGATC	2 cut(s)	152, 556
AoxI	GGCC	4 cut(s)	81, 321, 373, 495
ApeKI	GCWGC	4 cut(s)	636, 742, 761, 764
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	27, 82
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	28, 285
AvaII	GGWCC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	396, 432
BbsI	GAAGAC	4 cut(s)	88, 252, 258, 297
BbvI	GCAGC	4 cut(s)	648, 729, 748, 751
BccI	CCATC	6 cut(s)	38, 116, 379, 656, 668, 863
BceAI	ACGGC	2 cut(s)	327, 747
BcgI	CGANNNNNNTGC	2 cut(s)	757, 791
BciT130I	CCWGG	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	2 cut(s)	461, 626
BfmI	CTRYAG	2 cut(s)	297, 634
BisI	GCNGC	5 cut(s)	324, 637, 743, 762, 765
BlsI	GCNGC	5 cut(s)	325, 638, 744, 763, 766
Bme1390I	CCNGG	2 cut(s)	328, 566
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 82
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	328, 566
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	4 cut(s)	88, 252, 258, 297
BpuMI	CCSGG	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	309, 565
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 527
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	309, 565
BseGI	GGATG	3 cut(s)	30, 390, 667
BseLI	CCNNNNNNNGG	2 cut(s)	79, 527
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	92, 109, 223
BseXI	GCAGC	4 cut(s)	648, 729, 748, 751
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	4 cut(s)	83, 323, 375, 497
BsiSI	CCGG	2 cut(s)	328, 498
BslI	CCNNNNNNNGG	2 cut(s)	79, 527
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	4 cut(s)	83, 323, 375, 497
Bsp1286I	GDGCHC	2 cut(s)	396, 432
Bsp143I	GATC	3 cut(s)	157, 447, 561
BspACI	CCGC	4 cut(s)	70, 167, 324, 521
BspANI	GGCC	4 cut(s)	83, 323, 375, 497
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	638
BspPI	GGATC	2 cut(s)	152, 556
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	309, 565
BssMI	GATC	3 cut(s)	157, 447, 561
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	643, 775
Bst6I	CTCTTC	4 cut(s)	259, 280, 415, 825
BstC8I	GCNNGC	3 cut(s)	813, 841, 857
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	30, 390, 667
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	160, 450, 564
BstMBI	GATC	3 cut(s)	157, 447, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 748, 808
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	326, 564
BstSFI	CTRYAG	2 cut(s)	297, 634
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	4 cut(s)	648, 729, 748, 751
BstV2I	GAAGAC	4 cut(s)	88, 252, 258, 297
BsuRI	GGCC	4 cut(s)	83, 323, 375, 497
BtgI	CCRYGG	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	30, 390, 667
Cac8I	GCNNGC	3 cut(s)	813, 841, 857
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	27, 82
CseI	GACGC	1 cut(s)	291
CviAII	CATG	2 cut(s)	758, 803
DpnI	GATC	3 cut(s)	159, 449, 563
DpnII	GATC	3 cut(s)	157, 447, 561
EaeI	YGGCCR	3 cut(s)	321, 373, 495
Eam1104I	CTCTTC	4 cut(s)	259, 280, 415, 825
EarI	CTCTTC	4 cut(s)	259, 280, 415, 825
Eco24I	GRGCYC	2 cut(s)	396, 432
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	172, 849
EcoRII	CCWGG	1 cut(s)	564
EcoT38I	GRGCYC	2 cut(s)	396, 432
FaeI	CATG	2 cut(s)	761, 806
FatI	CATG	2 cut(s)	757, 802
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	738
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	324, 637, 743, 762, 765
FokI	GGATG	3 cut(s)	17, 397, 674
FriOI	GRGCYC	2 cut(s)	396, 432
Fsp4HI	GCNGC	5 cut(s)	324, 637, 743, 762, 765
FspBI	CTAG	2 cut(s)	461, 626
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	5 cut(s)	324, 637, 743, 762, 765
HaeIII	GGCC	4 cut(s)	83, 323, 375, 497
HapII	CCGG	2 cut(s)	328, 498
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	761, 806
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	7 cut(s)	41, 490, 544, 556, 622, 630, 694
HpaII	CCGG	2 cut(s)	328, 498
HphI	GGTGA	2 cut(s)	28, 285
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	549, 561, 649
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	3 cut(s)	95, 128, 733
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	643, 775
HpyCH4V	TGCA	4 cut(s)	636, 690, 792, 802
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 748, 808
Hsp92II	CATG	2 cut(s)	761, 806
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	157, 447, 561
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	4 cut(s)	648, 729, 748, 751
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	2 cut(s)	461, 626
MalI	GATC	3 cut(s)	159, 449, 563
MboI	GATC	3 cut(s)	157, 447, 561
MhlI	GDGCHC	2 cut(s)	396, 432
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	5 cut(s)	172, 182, 484, 685, 822
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	3 cut(s)	484, 553, 703
MmeI	TCCRAC	2 cut(s)	527, 798
Mox20I	TGGCCA	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	375
MspI	CCGG	2 cut(s)	328, 498
MspR9I	CCNGG	2 cut(s)	328, 566
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	3 cut(s)	320, 748, 808
NciI	CCSGG	1 cut(s)	328
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	3 cut(s)	157, 447, 561
NlaIII	CATG	2 cut(s)	761, 806
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	2 cut(s)	254, 513
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	4 cut(s)	41, 556, 622, 630
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	325, 638, 744, 763, 766
PleI	GAGTC	3 cut(s)	484, 552, 702
PpsI	GAGTC	3 cut(s)	484, 552, 702
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	27, 82
PstI	CTGCAG	1 cut(s)	638
SatI	GCNGC	5 cut(s)	324, 637, 743, 762, 765
Sau3AI	GATC	3 cut(s)	157, 447, 561
Sau96I	GGNCC	2 cut(s)	27, 82
SchI	GAGTC	3 cut(s)	484, 553, 703
ScrFI	CCNGG	2 cut(s)	328, 566
SduI	GDGCHC	2 cut(s)	396, 432
SetI	ASST	5 cut(s)	24, 150, 298, 365, 813
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	2 cut(s)	297, 634
SinI	GGWCC	1 cut(s)	27
Sse9I	AATT	5 cut(s)	172, 182, 484, 685, 822
SsiI	CCGC	4 cut(s)	70, 167, 324, 521
SspMI	CTAG	2 cut(s)	461, 626
StyD4I	CCNGG	2 cut(s)	326, 564
TaaI	ACNGT	2 cut(s)	643, 775
TaqI	TCGA	6 cut(s)	44, 396, 516, 728, 864, 907
TasI	AATT	5 cut(s)	172, 182, 484, 685, 822
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	4 cut(s)	41, 556, 622, 630
TseI	GCWGC	4 cut(s)	636, 742, 761, 764
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	3 cut(s)	79, 112, 345
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	461, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.