Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012017.1

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Forward (+)

21191 .. 22234

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012017.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggcaactccgtcaagttcttccataccaaaccacgacgtttattccgccatggcaactccgtctccacccctaaactttcggacaatcctcaccgaatcgaggcgcatcatcaccgcccccgcccactcccgccacttcttggctctctccatcgtcttcctcctccccatctccgtctcctcctttgtctacccaactctccaaaacctcatcgccgaattgttcaagatttccaactttgaccaaccctctcttcccaccaagaccctactcctcgctctcgctttcgccctcttcgtcttcgtcgtctctctcttcgctatcagctcaatcacgtacagcgtcttccacggcttctatggccgcccggtcaagttcatatcggctgtccgatccgtcaaggtttcgttctggccagtattgggtactgttcttgcttcccacatcgtctttttattggttgttcttgttgctgggctgttcttgttcttggtggttggatgttttgagatggttggcctcgaaatggggttctcttcgccttatttcgttgggctctgtgttgtggttgcgattcctctgttgctggttttgttgtatcttcaagtgaattggactctggctggtgtagttgctgtcctcgaaccgcgttgggggtttaacgcattgagtcggagtgcaaatttgatcaagggaatgcgaggggtggcgttgtctttgatggtgcttttcggggcgtggactgggattttggggttcttcatctcgaaatctgagttggatttggatggggctactactgatgggtggatgaattggatgagtttggcatctgtttatctgattttgtatttttcgatgggtcatacgctggcactgctctatcatgctgctgcgaatacggtgttgtttttgtattgcaagactctgcatggagagcttgcgttggagattggtgaaaagtttgcgaccgagtacgtgagcctgcctttcgatgatggaaaagttcctcatcttgtttcggttgccaatgttctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

37.96

Weight (kDa)

7.78

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	652
AciI	CCGC	6 cut(s)	48, 117, 123, 133, 367, 650
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	2 cut(s)	364, 416
AcsI	RAATTY	1 cut(s)	685
AfaI	GTAC	3 cut(s)	341, 430, 980
AfiI	CCNNNNNNNGG	5 cut(s)	102, 142, 425, 529, 656
AgsI	TTSAA	2 cut(s)	229, 608
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 764, 796
AluBI	AGCT	2 cut(s)	330, 943
AluI	AGCT	2 cut(s)	330, 943
Alw26I	GTCTC	3 cut(s)	69, 184, 316
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	3 cut(s)	364, 416, 520
ApeKI	GCWGC	2 cut(s)	893, 896
ApoI	RAATTY	1 cut(s)	685
ArsI	GACNNNNNNTTYG	2 cut(s)	736, 768
AspLEI	GCGC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	85, 106, 971
BalI	TGGCCA	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	561
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BbsI	GAAGAC	3 cut(s)	151, 295, 340
BbvI	GCAGC	2 cut(s)	880, 883
BccI	CCATC	8 cut(s)	161, 179, 508, 718, 785, 800, 856, 995
BceAI	ACGGC	1 cut(s)	370
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	69, 184, 316
BisI	GCNGC	3 cut(s)	367, 894, 897
BlsI	GCNGC	3 cut(s)	368, 895, 898
Bme1390I	CCNGG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	117, 842
BmuI	ACTGGG	1 cut(s)	756
BpiI	GAAGAC	3 cut(s)	151, 295, 340
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	2 cut(s)	339, 982
BsaJI	CCNNGG	2 cut(s)	51, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 142, 425, 529, 656
Bse1I	ACTGG	2 cut(s)	419, 751
BseDI	CCNNGG	2 cut(s)	51, 352
BseGI	GGATG	4 cut(s)	509, 796, 819, 828
BseLI	CCNNNNNNNGG	5 cut(s)	102, 142, 425, 529, 656
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	2 cut(s)	419, 751
BseRI	GAGGAG	3 cut(s)	155, 172, 266
BseXI	GCAGC	2 cut(s)	880, 883
BseYI	CCCAGC	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	652
Bsh1285I	CGRYCG	1 cut(s)	975
BshFI	GGCC	3 cut(s)	366, 418, 522
BsiEI	CGRYCG	1 cut(s)	975
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	5 cut(s)	102, 142, 425, 529, 656
BsmAI	GTCTC	3 cut(s)	69, 184, 316
BsmBI	CGTCTC	3 cut(s)	69, 184, 316
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	366, 418, 522
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	395, 690
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	6 cut(s)	48, 117, 123, 133, 367, 650
BspANI	GGCC	3 cut(s)	366, 418, 522
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	419, 751
BssECI	CCNNGG	2 cut(s)	51, 352
BssMI	GATC	2 cut(s)	395, 690
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	433, 907
Bst6I	CTCTTC	4 cut(s)	261, 302, 323, 544
BstBAI	YACGTR	2 cut(s)	339, 982
BstC8I	GCNNGC	3 cut(s)	876, 945, 989
BstDEI	CTNAG	1 cut(s)	777
BstDSI	CCRYGG	2 cut(s)	51, 352
BstF5I	GGATG	4 cut(s)	509, 796, 819, 828
BstFNI	CGCG	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	398, 693
BstMAI	GTCTC	3 cut(s)	69, 184, 316
BstMBI	GATC	2 cut(s)	395, 690
BstMCI	CGRYCG	1 cut(s)	975
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 880, 940
BstSCI	CCNGG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	652
BstV1I	GCAGC	2 cut(s)	880, 883
BstV2I	GAAGAC	3 cut(s)	151, 295, 340
BsuRI	GGCC	3 cut(s)	366, 418, 522
BtgI	CCRYGG	2 cut(s)	51, 352
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	4 cut(s)	509, 796, 819, 828
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	1 cut(s)	878
Cac8I	GCNNGC	3 cut(s)	876, 945, 989
CfoI	GCGC	1 cut(s)	108
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	340, 429, 979
CviAII	CATG	3 cut(s)	52, 890, 935
CviQI	GTAC	3 cut(s)	340, 429, 979
DdeI	CTNAG	1 cut(s)	777
DpnI	GATC	2 cut(s)	397, 692
DpnII	GATC	2 cut(s)	395, 690
EaeI	YGGCCR	2 cut(s)	364, 416
Eam1104I	CTCTTC	4 cut(s)	261, 302, 323, 544
EarI	CTCTTC	4 cut(s)	261, 302, 323, 544
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	3 cut(s)	69, 184, 316
FaeI	CATG	3 cut(s)	55, 893, 938
FaiI	YATR	7 cut(s)	26, 53, 363, 383, 870, 891, 936
FatI	CATG	3 cut(s)	51, 889, 934
FauI	CCCGC	2 cut(s)	130, 140
FbaI	TGATCA	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	367, 894, 897
FokI	GGATG	4 cut(s)	516, 803, 826, 835
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	3 cut(s)	367, 894, 897
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	3 cut(s)	367, 894, 897
GsaI	CCCAGC	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	366, 418, 522
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	55, 893, 938
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	98, 577, 619, 673, 928
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	85, 106, 971
Hpy166II	GTNNAC	2 cut(s)	193, 744
Hpy188I	TCNGA	5 cut(s)	84, 395, 678, 778, 846
Hpy188III	TCNNGA	2 cut(s)	229, 769
Hpy8I	GTNNAC	2 cut(s)	193, 744
Hpy99I	CGWCG	2 cut(s)	41, 311
HpyCH4III	ACNGT	2 cut(s)	433, 907
HpyCH4IV	ACGT	3 cut(s)	39, 338, 981
HpyCH4V	TGCA	3 cut(s)	683, 924, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 880, 940
HpyF3I	CTNAG	1 cut(s)	777
HpySE526I	ACGT	3 cut(s)	39, 338, 981
Hsp92II	CATG	3 cut(s)	55, 893, 938
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	395, 690
Lsp1109I	GCAGC	2 cut(s)	880, 883
LweI	GCATC	2 cut(s)	117, 842
MaeII	ACGT	3 cut(s)	39, 338, 981
MalI	GATC	2 cut(s)	397, 692
MboI	GATC	2 cut(s)	395, 690
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	418
MluCI	AATT	4 cut(s)	221, 613, 685, 817
MluNI	TGGCCA	1 cut(s)	418
MlyI	GAGTC	3 cut(s)	613, 682, 922
MmeI	TCCRAC	5 cut(s)	261, 481, 656, 762, 930
Mox20I	TGGCCA	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	418
MseI	TTAA	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	418
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	705
MvnI	CGCG	1 cut(s)	652
MwoI	GCNNNNNNNGC	3 cut(s)	363, 880, 940
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	395, 690
NlaIII	CATG	3 cut(s)	55, 893, 938
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 306
PctI	GAATGC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	98, 577
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	368, 895, 898
PleI	GAGTC	3 cut(s)	613, 681, 922
PpsI	GAGTC	3 cut(s)	613, 681, 922
Ppu21I	YACGTR	2 cut(s)	339, 982
PspFI	CCCAGC	1 cut(s)	476
RsaI	GTAC	3 cut(s)	341, 430, 980
RsaNI	GTAC	3 cut(s)	340, 429, 979
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	3 cut(s)	367, 894, 897
Sau3AI	GATC	2 cut(s)	395, 690
SchI	GAGTC	3 cut(s)	613, 682, 922
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	7 cut(s)	42, 213, 332, 341, 408, 945, 984
SfaNI	GCATC	2 cut(s)	117, 842
Sse9I	AATT	4 cut(s)	221, 613, 685, 817
SsiI	CCGC	6 cut(s)	48, 117, 123, 133, 367, 650
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	433, 907
TaiI	ACGT	3 cut(s)	42, 341, 984
TaqI	TCGA	6 cut(s)	101, 525, 645, 770, 860, 996
TaqII	GACCGA	1 cut(s)	989
TasI	AATT	4 cut(s)	221, 613, 685, 817
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	98, 577
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	1 cut(s)	885
TseI	GCWGC	2 cut(s)	893, 896
TspDTI	ATGAA	3 cut(s)	370, 754, 830
TspGWI	ACGGA	3 cut(s)	51, 166, 388
TspRI	CASTG	1 cut(s)	885
Van91I	CCANNNNNTGG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.