Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

59043901 .. 59045495

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCAACTCCGTCAAGTTCTTCCATACCAAACCACGACGTTTATTCCGCCATGGCAACTCCGTCTCCACCCCTAAACTTTCGGACAATCCTCACCGAATCGAGGCGCATCATCACCGCCCACTCCCGCCACTTCTTGGCTCTCTCCATCGTCTTCCTCCTCCCCATCTCCGTCTCCTCCTTTGTCTACCCAACTCTCCAAAACCTCATCGCCGAATTGTTCAAGATTTCCAACTTTGACCAACCCTCTCTTCCCACCAAGACCCTACTCCTCGCTCTTGCTTTCGCCCTCTTCGTCTTCGTCGTCTCTCTCTTCGCTATCGGCTCAATCACGTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCGGCTGTCCAATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTTGCTTCCCACATCGTCTTTTTATTGGTTGTTCTTGTTGCTGGGCTGTTCTTGTTCTTGGTGGTTGGATGTTTTGAGATGGTTGGTCTCGAAATGGAGTTCTCTTCGCCTTATTTCGTTGGGATCTGTGTTGTGGTTGCGATTCCTCTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTGGCTGGTGTAGTTGCTGTCCTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCAAATTTGATCAAGGGAATGCGAGGGGTGGCGTTGTCTTTGATGGTGCTTTTCGGGGCGTGGACTGGGATTTTGGGGTTCTTCATCTCGAAATCTGAGTTGGATTTGGATGGGGCTACTACTGATGGGTGGATGAATTGGATGAGTTTGGCATCTGTTTATCTGATTTTGTATTTTTCGATGGGTCATACGCTGGCACTGCTCTATCATGCTGCTGCAAATACGGTGTTGTTTTTGTATTGCAAGACTCTGCATGGAGAGCTTGCGTTGGAGATTGGTGAAAAGTTTGCGACCGAGTACGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCAATGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

37.78

Weight (kDa)

6.75

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	646
AciI	CCGC	5 cut(s)	48, 117, 127, 361, 644
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	2 cut(s)	358, 410
AcsI	RAATTY	1 cut(s)	679
AfaI	GTAC	3 cut(s)	335, 424, 974
AfiI	CCNNNNNNNGG	4 cut(s)	102, 136, 419, 650
AgsI	TTSAA	2 cut(s)	223, 602
AjuI	GAANNNNNNNTTGG	4 cut(s)	234, 266, 758, 790
AluBI	AGCT	1 cut(s)	937
AluI	AGCT	1 cut(s)	937
Alw26I	GTCTC	4 cut(s)	69, 178, 310, 521
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	2 cut(s)	358, 410
ApeKI	GCWGC	2 cut(s)	887, 890
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AspLEI	GCGC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	85, 106, 965
BalI	TGGCCA	1 cut(s)	412
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbsI	GAAGAC	3 cut(s)	145, 289, 334
BbvI	GCAGC	2 cut(s)	874, 877
BccI	CCATC	8 cut(s)	155, 173, 502, 712, 779, 794, 850, 989
BceAI	ACGGC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	4 cut(s)	69, 178, 310, 521
BisI	GCNGC	3 cut(s)	361, 888, 891
BlsI	GCNGC	3 cut(s)	362, 889, 892
Bme1390I	CCNGG	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	117, 836
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	3 cut(s)	145, 289, 334
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	2 cut(s)	333, 976
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	51, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 136, 419, 650
Bse1I	ACTGG	2 cut(s)	413, 745
BseDI	CCNNGG	2 cut(s)	51, 346
BseGI	GGATG	4 cut(s)	503, 790, 813, 822
BseLI	CCNNNNNNNGG	4 cut(s)	102, 136, 419, 650
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	2 cut(s)	413, 745
BseRI	GAGGAG	3 cut(s)	149, 166, 260
BseXI	GCAGC	2 cut(s)	874, 877
BseYI	CCCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	646
Bsh1285I	CGRYCG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	360, 412
BsiEI	CGRYCG	1 cut(s)	969
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	4 cut(s)	102, 136, 419, 650
BsmAI	GTCTC	4 cut(s)	69, 178, 310, 521
BsmBI	CGTCTC	3 cut(s)	69, 178, 310
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	2 cut(s)	360, 412
Bso31I	GGTCTC	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	552, 684
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	5 cut(s)	48, 117, 127, 361, 644
BspANI	GGCC	2 cut(s)	360, 412
BspCNI	CTCAG	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	646
BspPI	GGATC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	413, 745
BssECI	CCNNGG	2 cut(s)	51, 346
BssMI	GATC	2 cut(s)	552, 684
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	427, 901
Bst6I	CTCTTC	4 cut(s)	255, 296, 317, 538
BstBAI	YACGTR	2 cut(s)	333, 976
BstC8I	GCNNGC	3 cut(s)	870, 939, 983
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	51, 346
BstF5I	GGATG	4 cut(s)	503, 790, 813, 822
BstFNI	CGCG	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	555, 687
BstMAI	GTCTC	4 cut(s)	69, 178, 310, 521
BstMBI	GATC	2 cut(s)	552, 684
BstMCI	CGRYCG	1 cut(s)	969
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 874, 934
BstSCI	CCNGG	1 cut(s)	363
BstUI	CGCG	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	874, 877
BstV2I	GAAGAC	3 cut(s)	145, 289, 334
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	360, 412
BtgI	CCRYGG	2 cut(s)	51, 346
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	503, 790, 813, 822
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	1 cut(s)	872
Cac8I	GCNNGC	3 cut(s)	870, 939, 983
CfoI	GCGC	1 cut(s)	108
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	334, 423, 973
CviAII	CATG	3 cut(s)	52, 884, 929
CviQI	GTAC	3 cut(s)	334, 423, 973
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	2 cut(s)	554, 686
DpnII	GATC	2 cut(s)	552, 684
EaeI	YGGCCR	2 cut(s)	358, 410
Eam1104I	CTCTTC	4 cut(s)	255, 296, 317, 538
EarI	CTCTTC	4 cut(s)	255, 296, 317, 538
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	3 cut(s)	69, 178, 310
FaeI	CATG	3 cut(s)	55, 887, 932
FaiI	YATR	7 cut(s)	26, 53, 357, 377, 864, 885, 930
FatI	CATG	3 cut(s)	51, 883, 928
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	684
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	361, 888, 891
FokI	GGATG	4 cut(s)	510, 797, 820, 829
Fsp4HI	GCNGC	3 cut(s)	361, 888, 891
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	3 cut(s)	361, 888, 891
GsaI	CCCAGC	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	360, 412
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	55, 887, 932
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	98, 571, 613, 667, 922
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	3 cut(s)	85, 106, 965
Hpy166II	GTNNAC	2 cut(s)	187, 738
Hpy188I	TCNGA	4 cut(s)	84, 672, 772, 840
Hpy188III	TCNNGA	3 cut(s)	223, 518, 763
Hpy8I	GTNNAC	2 cut(s)	187, 738
Hpy99I	CGWCG	2 cut(s)	41, 305
HpyCH4III	ACNGT	2 cut(s)	427, 901
HpyCH4IV	ACGT	3 cut(s)	39, 332, 975
HpyCH4V	TGCA	4 cut(s)	677, 893, 918, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 874, 934
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	3 cut(s)	39, 332, 975
Hsp92II	CATG	3 cut(s)	55, 887, 932
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	2 cut(s)	552, 684
Lsp1109I	GCAGC	2 cut(s)	874, 877
LweI	GCATC	2 cut(s)	117, 836
MaeII	ACGT	3 cut(s)	39, 332, 975
MalI	GATC	2 cut(s)	554, 686
MboI	GATC	2 cut(s)	552, 684
MflI	RGATCY	1 cut(s)	552
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	4 cut(s)	215, 607, 679, 811
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	3 cut(s)	607, 676, 916
MmeI	TCCRAC	5 cut(s)	255, 475, 650, 756, 924
Mox20I	TGGCCA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	657
Msp20I	TGGCCA	1 cut(s)	412
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	699
MvnI	CGCG	1 cut(s)	646
MwoI	GCNNNNNNNGC	3 cut(s)	357, 874, 934
NciI	CCSGG	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	552, 684
NlaIII	CATG	3 cut(s)	55, 887, 932
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 300
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	98, 571
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	362, 889, 892
PleI	GAGTC	3 cut(s)	607, 675, 916
PpsI	GAGTC	3 cut(s)	607, 675, 916
Ppu21I	YACGTR	2 cut(s)	333, 976
PspFI	CCCAGC	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	552
RsaI	GTAC	3 cut(s)	335, 424, 974
RsaNI	GTAC	3 cut(s)	334, 423, 973
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	3 cut(s)	361, 888, 891
Sau3AI	GATC	2 cut(s)	552, 684
SchI	GAGTC	3 cut(s)	607, 676, 916
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	6 cut(s)	42, 207, 335, 402, 939, 978
SfaNI	GCATC	2 cut(s)	117, 836
Sse9I	AATT	4 cut(s)	215, 607, 679, 811
SsiI	CCGC	5 cut(s)	48, 117, 127, 361, 644
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	427, 901
TaiI	ACGT	3 cut(s)	42, 335, 978
TaqI	TCGA	6 cut(s)	101, 519, 639, 764, 854, 990
TaqII	GACCGA	1 cut(s)	983
TasI	AATT	4 cut(s)	215, 607, 679, 811
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	98, 571
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	879
TseI	GCWGC	2 cut(s)	887, 890
TspDTI	ATGAA	3 cut(s)	364, 748, 824
TspGWI	ACGGA	3 cut(s)	51, 160, 382
TspRI	CASTG	1 cut(s)	879
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.