Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

61514826 .. 61516095

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAAATCCGTCTCCACCCCTAAACTTTCGGACAATCCTCACCGAATCGAGGCGCATCATCACCGCCCACTCCCGCCACTTCTTGGCTCTCTCCATCGTCTTCCTCCTCCCCATCTCCGTCTCCTCCTTTGTCTACCCAACTCTCCAAAACCTCATCGCCGAATTGTTCAAGATTTCCAACTTTGACCAACCCTCTCTTCCCACCAAGACCCTACTCCTCGCTCTTGCTTTCGCCCTCTTCGTCTTCGTCGTCTCTCTCTTCGCTATCGGCTCAATCACGTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCGGCTGTCCAATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTTGCTTCCCACATCGTCTTTTTATTGGTTGTTCTTGTTGCTGGGCTGTTCTTGTTCTTGGTGGTTGGATGTTTTGAGATGGTTGGTCTCGAAATGGAGTTCTCTTCGCCTTATTTCGTTGGGATCTGTGTTGTGGTTGCGATTCCTCTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTGGCTGGTGTAGTTGCTGTCCTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCAAATTTGATCAAGGGAATGCGAGGGGTGGCGTTGTCTTTGATGGTGCTTTTCGGGGCGTGGACTGGGATTTTGGGGTTCTTCATCTCGAAATCTGAGTTGGATTTGGATGGGGCTACTACTGATGGGTGGATGAATTGGATGAGTTTGGCATCTGTTTATCTGATTTTGTATTTTTCGATGGGTCATACGCTGGCACTGCTCTATCATGCTGCTGCAAATACGGTGTTGTTTTTGTATTGCAAGACTCTGCATGGAGAGCTTGCGTTGGAGATTGGTGAAAAGTTTGCGACCGAGTACGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCAATGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.04

Weight (kDa)

7.09

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	595
AciI	CCGC	4 cut(s)	66, 76, 310, 593
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	2 cut(s)	307, 359
AcsI	RAATTY	1 cut(s)	628
AfaI	GTAC	3 cut(s)	284, 373, 923
AfiI	CCNNNNNNNGG	4 cut(s)	51, 85, 368, 599
AgsI	TTSAA	2 cut(s)	172, 551
AjuI	GAANNNNNNNTTGG	4 cut(s)	183, 215, 707, 739
AluBI	AGCT	1 cut(s)	886
AluI	AGCT	1 cut(s)	886
Alw26I	GTCTC	4 cut(s)	18, 127, 259, 470
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	2 cut(s)	307, 359
ApeKI	GCWGC	2 cut(s)	836, 839
ApoI	RAATTY	1 cut(s)	628
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
AspLEI	GCGC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	34, 55, 914
BalI	TGGCCA	1 cut(s)	361
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	3 cut(s)	94, 238, 283
BbvI	GCAGC	2 cut(s)	823, 826
BccI	CCATC	8 cut(s)	104, 122, 451, 661, 728, 743, 799, 938
BceAI	ACGGC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	4 cut(s)	18, 127, 259, 470
BisI	GCNGC	3 cut(s)	310, 837, 840
BlsI	GCNGC	3 cut(s)	311, 838, 841
Bme1390I	CCNGG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	66, 785
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	3 cut(s)	94, 238, 283
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	2 cut(s)	282, 925
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 85, 368, 599
Bse1I	ACTGG	2 cut(s)	362, 694
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	4 cut(s)	452, 739, 762, 771
BseLI	CCNNNNNNNGG	4 cut(s)	51, 85, 368, 599
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	2 cut(s)	362, 694
BseRI	GAGGAG	3 cut(s)	98, 115, 209
BseXI	GCAGC	2 cut(s)	823, 826
BseYI	CCCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	595
Bsh1285I	CGRYCG	1 cut(s)	918
BshFI	GGCC	2 cut(s)	309, 361
BsiEI	CGRYCG	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	4 cut(s)	51, 85, 368, 599
BsmAI	GTCTC	4 cut(s)	18, 127, 259, 470
BsmBI	CGTCTC	3 cut(s)	18, 127, 259
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	309, 361
Bso31I	GGTCTC	1 cut(s)	470
Bsp143I	GATC	2 cut(s)	501, 633
BspACI	CCGC	4 cut(s)	66, 76, 310, 593
BspANI	GGCC	2 cut(s)	309, 361
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	362, 694
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	501, 633
Bst4CI	ACNGT	2 cut(s)	376, 850
Bst6I	CTCTTC	4 cut(s)	204, 245, 266, 487
BstBAI	YACGTR	2 cut(s)	282, 925
BstC8I	GCNNGC	3 cut(s)	819, 888, 932
BstDEI	CTNAG	1 cut(s)	720
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	4 cut(s)	452, 739, 762, 771
BstFNI	CGCG	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	2 cut(s)	504, 636
BstMAI	GTCTC	4 cut(s)	18, 127, 259, 470
BstMBI	GATC	2 cut(s)	501, 633
BstMCI	CGRYCG	1 cut(s)	918
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 823, 883
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	823, 826
BstV2I	GAAGAC	3 cut(s)	94, 238, 283
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	309, 361
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	4 cut(s)	452, 739, 762, 771
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	1 cut(s)	821
Cac8I	GCNNGC	3 cut(s)	819, 888, 932
CfoI	GCGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	283, 372, 922
CviAII	CATG	2 cut(s)	833, 878
CviQI	GTAC	3 cut(s)	283, 372, 922
DdeI	CTNAG	1 cut(s)	720
DpnI	GATC	2 cut(s)	503, 635
DpnII	GATC	2 cut(s)	501, 633
EaeI	YGGCCR	2 cut(s)	307, 359
Eam1104I	CTCTTC	4 cut(s)	204, 245, 266, 487
EarI	CTCTTC	4 cut(s)	204, 245, 266, 487
Eco31I	GGTCTC	1 cut(s)	470
Esp3I	CGTCTC	3 cut(s)	18, 127, 259
FaeI	CATG	2 cut(s)	836, 881
FaiI	YATR	5 cut(s)	306, 326, 813, 834, 879
FatI	CATG	2 cut(s)	832, 877
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	310, 837, 840
FokI	GGATG	4 cut(s)	459, 746, 769, 778
Fsp4HI	GCNGC	3 cut(s)	310, 837, 840
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	3 cut(s)	310, 837, 840
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	309, 361
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	836, 881
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	5 cut(s)	47, 520, 562, 616, 871
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	3 cut(s)	34, 55, 914
Hpy166II	GTNNAC	2 cut(s)	136, 687
Hpy188I	TCNGA	4 cut(s)	33, 621, 721, 789
Hpy188III	TCNNGA	3 cut(s)	172, 467, 712
Hpy8I	GTNNAC	2 cut(s)	136, 687
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	376, 850
HpyCH4IV	ACGT	2 cut(s)	281, 924
HpyCH4V	TGCA	4 cut(s)	626, 842, 867, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 823, 883
HpyF3I	CTNAG	1 cut(s)	720
HpySE526I	ACGT	2 cut(s)	281, 924
Hsp92II	CATG	2 cut(s)	836, 881
HspAI	GCGC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	501, 633
Lsp1109I	GCAGC	2 cut(s)	823, 826
LweI	GCATC	2 cut(s)	66, 785
MaeII	ACGT	2 cut(s)	281, 924
MalI	GATC	2 cut(s)	503, 635
MboI	GATC	2 cut(s)	501, 633
MboII	GAAGA	9 cut(s)	94, 191, 232, 238, 253, 283, 474, 539, 697
MflI	RGATCY	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	4 cut(s)	164, 556, 628, 760
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	3 cut(s)	556, 625, 865
MmeI	TCCRAC	5 cut(s)	204, 424, 599, 705, 873
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	648
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	306, 823, 883
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	501, 633
NlaIII	CATG	2 cut(s)	836, 881
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 249
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	47, 520
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	311, 838, 841
PleI	GAGTC	3 cut(s)	556, 624, 865
PpsI	GAGTC	3 cut(s)	556, 624, 865
Ppu21I	YACGTR	2 cut(s)	282, 925
PspFI	CCCAGC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	501
RsaI	GTAC	3 cut(s)	284, 373, 923
RsaNI	GTAC	3 cut(s)	283, 372, 922
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	3 cut(s)	310, 837, 840
Sau3AI	GATC	2 cut(s)	501, 633
SchI	GAGTC	3 cut(s)	556, 625, 865
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	5 cut(s)	156, 284, 351, 888, 927
SfaNI	GCATC	2 cut(s)	66, 785
Sse9I	AATT	4 cut(s)	164, 556, 628, 760
SsiI	CCGC	4 cut(s)	66, 76, 310, 593
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	376, 850
TaiI	ACGT	2 cut(s)	284, 927
TaqI	TCGA	6 cut(s)	50, 468, 588, 713, 803, 939
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	4 cut(s)	164, 556, 628, 760
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	47, 520
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	828
TseI	GCWGC	2 cut(s)	836, 839
TspDTI	ATGAA	3 cut(s)	313, 697, 773
TspGWI	ACGGA	2 cut(s)	109, 331
TspRI	CASTG	1 cut(s)	828
Van91I	CCANNNNNTGG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.