Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

66648121 .. 66652642

Gene Structure 4522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCCACTCCCGCCATTTCTTTCTCTTTCATCGTCTACGTAACTCTCCATAACCTCATCGCCAATTGTTTTCCGCACAATTCCCAAGAAATCTTCAAGATTTCCAATTTTGACCCTCAGCAACACCAACCCTCCCTCCCCACCAAACCCCTACTCCTTGCTCTTGCTTTTGCCCTCTTCGACTTAGTCTTCTCTCTCTTCGCTCTTGGCTCAATCACCTACAGCGTGTTCCACTGTTACTATTGCCGGCCGATCAAGTTCATATTAGTTGTCCAATTTGTCAAGGTTTGGTTCTGGCCAATATTGGGGTTCTACAGCTCGGTTTCCGAGTTCGGTTTGGATGAGGCTACTGATGGGTGGAGGAATTGGAAGAGTTTGGCATATGTGGTCAAGAATGACGCTCTCGAGGTTTCAGACAACAACGACGTGTTTGGTAGAGGTGTCGGTGGTTGCTATCGAACTCGGCTACTGGTTTCAGGTGGTCCCAAGATCAGTGGCACTTGTTTGGGGTGCCAGAGGAGGCGCGCAATGGTGTTGGATTCAGAAGAGCTTGAGCTCGGCTCCGGCGACCTCACTAGGGTTCCTGCTCTTGCTGGTCTGGGTTGCAGGGGTGAGGGTAGTAGGAATGGGCTGGGCTATACCTATATCCCTTCCTCTCTCTGGCGTGGGATGGGTCTTGGGTTGGGCTTTGGTGGGCTGGCCTCAACACCCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.17

Weight (kDa)

8.15

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	525
AciI	CCGC	2 cut(s)	12, 74
AcoI	YGGCCR	2 cut(s)	248, 296
AfiI	CCNNNNNNNGG	3 cut(s)	305, 577, 660
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	427
AluBI	AGCT	3 cut(s)	318, 550, 556
AluI	AGCT	3 cut(s)	318, 550, 556
Alw21I	GWGCWC	1 cut(s)	558
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	3 cut(s)	248, 296, 699
AspLEI	GCGC	2 cut(s)	525, 527
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	208, 623
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	558
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	347, 664
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	220, 313
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	4 cut(s)	484, 512, 562, 582
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	40
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 120, 138, 146, 150, 168
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 577, 660
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	346, 675
BseLI	CCNNNNNNNGG	3 cut(s)	305, 577, 660
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	474
BsePI	GCGCGC	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	532
BseX3I	CGGCCG	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	250, 298, 701
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	247, 564
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	3 cut(s)	305, 577, 660
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	3 cut(s)	250, 298, 701
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	252, 489
BspACI	CCGC	2 cut(s)	12, 74
BspANI	GGCC	3 cut(s)	250, 298, 701
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	4 cut(s)	484, 512, 562, 582
BspQI	GCTCTTC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	246
BssHII	GCGCGC	1 cut(s)	523
BssMI	GATC	2 cut(s)	252, 489
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	4 cut(s)	182, 203, 365, 540
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	248, 525, 699
BstDEI	CTNAG	2 cut(s)	117, 184
BstF5I	GGATG	2 cut(s)	346, 675
BstFNI	CGCG	1 cut(s)	525
BstHHI	GCGC	2 cut(s)	525, 527
BstKTI	GATC	2 cut(s)	255, 492
BstMBI	GATC	2 cut(s)	252, 489
BstMCI	CGRYCG	1 cut(s)	251
BstSFI	CTRYAG	2 cut(s)	220, 313
BstSNI	TACGTA	1 cut(s)	40
BstUI	CGCG	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	250, 298, 701
BtgZI	GCGATG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	346, 675
BtsIMutI	CAGTG	2 cut(s)	232, 499
Cac8I	GCNNGC	3 cut(s)	248, 525, 699
CfoI	GCGC	2 cut(s)	525, 527
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	407
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
DdeI	CTNAG	2 cut(s)	117, 184
DpnI	GATC	2 cut(s)	254, 491
DpnII	GATC	2 cut(s)	252, 489
EaeI	YGGCCR	2 cut(s)	248, 296
EagI	CGGCCG	1 cut(s)	248
Eam1104I	CTCTTC	4 cut(s)	182, 203, 365, 540
EarI	CTCTTC	4 cut(s)	182, 203, 365, 540
Ecl136II	GAGCTC	1 cut(s)	556
EclXI	CGGCCG	1 cut(s)	248
Eco105I	TACGTA	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	482
Eco52I	CGGCCG	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	558
FaiI	YATR	7 cut(s)	51, 263, 382, 384, 639, 645, 715
FaqI	GGGAC	1 cut(s)	468
FauI	CCCGC	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	2 cut(s)	353, 682
FriOI	GRGCYC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	2 cut(s)	524, 526
GsaI	CCCAGC	1 cut(s)	635
HaeIII	GGCC	3 cut(s)	250, 298, 701
HapII	CCGG	2 cut(s)	247, 564
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	525, 527
Hin6I	GCGC	2 cut(s)	523, 525
HinP1I	GCGC	2 cut(s)	523, 525
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	2 cut(s)	247, 564
HphI	GGTGA	2 cut(s)	208, 623
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	328, 415, 544
Hpy188III	TCNNGA	3 cut(s)	97, 391, 404
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	39, 426
HpyCH4V	TGCA	1 cut(s)	606
HpyF3I	CTNAG	2 cut(s)	117, 184
HpySE526I	ACGT	2 cut(s)	39, 426
HspAI	GCGC	2 cut(s)	523, 525
KroI	GCCGGC	1 cut(s)	246
KroNI	GCCGGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	252, 489
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	566
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	2 cut(s)	39, 426
MaeIII	GTNAC	2 cut(s)	40, 236
MalI	GATC	2 cut(s)	254, 491
MboI	GATC	2 cut(s)	252, 489
MboII	GAAGA	6 cut(s)	85, 169, 181, 190, 382, 557
MfeI	CAATTG	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	5 cut(s)	64, 79, 106, 275, 364
MluNI	TGGCCA	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	516
Mox20I	TGGCCA	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	298
Msp20I	TGGCCA	1 cut(s)	298
MspI	CCGG	2 cut(s)	247, 564
MunI	CAATTG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	525
NaeI	GCCGGC	1 cut(s)	248
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	2 cut(s)	252, 489
NgoMIV	GCCGGC	1 cut(s)	246
NlaIV	GGNNCC	4 cut(s)	484, 512, 562, 582
NmeAIII	GCCGAG	2 cut(s)	442, 537
PaeR7I	CTCGAG	1 cut(s)	404
PauI	GCGCGC	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PdiI	GCCGGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	539
PflFI	GACNNNGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	558
PspFI	CCCAGC	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	484, 512, 562, 582
PspPI	GGNCC	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	185
PteI	GCGCGC	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	540
Sau3AI	GATC	2 cut(s)	252, 489
Sau96I	GGNCC	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	220, 313
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	404, 551
SmoI	CTYRAG	2 cut(s)	404, 551
SnaBI	TACGTA	1 cut(s)	40
Sse9I	AATT	5 cut(s)	64, 79, 106, 275, 364
SsiI	CCGC	2 cut(s)	12, 74
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	42, 429
TaqI	TCGA	3 cut(s)	180, 405, 457
TasI	AATT	5 cut(s)	64, 79, 106, 275, 364
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	2 cut(s)	239, 499
TspDTI	ATGAA	2 cut(s)	19, 250
TspRI	CASTG	2 cut(s)	239, 499
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.