Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

30194033 .. 30198681

Gene Structure 4649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGGCAACTCCATCTCCTCCCTCCCTAAACTTGTGGACAGTCCTCACCGAAACCAAACGCATCATCGACGCCCACTCCTGGCACTTCCTCGCCCTCTCCTTCGTCTTCTTCCTCCCCGTCTCCATCTCCTGCACCGTCTACCCAACTCTCCACAACCTCCTCATCTCCGATCACCCACTCATAAACTCCCAAGAATTCTTCACCTCTTCCGATTCTGCCCCTCCTCACCTCCTCCTCCTCGCCCTCGCCTTGGCCCTCTTAGTCTTCGTCTTCTCCCTCTTCGGTCTCGGCTCCATCACCTACTCCGTCTTCCACGGCTTCTACGGCCGCCCCGTCAAGTTCTTATCCGCTGTCAACTCCGTCAGGCTCTCCTTTTTTCGGCTGCTCGGTACTGTTATTGCTTGTCAGCTCATCTTCTTGCTAACCGCTCTTGTCGCAGGACTGTTCTTGTTCTTGGTGATCGGAGTTTTCGAGATGATTGGATTGGAAATGGAGCTATCCTCGCCGTATTTCGTTGGGCTGTTCATCGTGGTTGCGATTGTATTGCTACTTGTTTTGCTGTATCTGCAAGTGAATTGGACTCTGGCTGGGGTAGTTTCTGTGGTCGAGCCACATTGGGGGTTCGGCGCGTTGAGGAGGAGTGCGGATTTGATGAGGGGAATGCGAGGGGTGGGGCTGTCGCTGATGGTGTTTTTCGGGGTTTGTAGTGGGGTTTTGGGGTTATGCAGCTCTGTTTCGTATGAGTGGAGGGGTCGGGACGGGTCGAGGAATGTGGTGATGGTTGTGTCGTGTTCGACGGTTGTTATGCTTGTGTTGTTGTATCATGCTGCGGCGAATACGGTGCTGTATATGTATTGCAAGGCTGTGAATGGAGAGATTGCGTTGGAGATTGCGGAGGAGTTTGCAAGCGAGTATGTGAGCCTGCCTTTTGATGATGGGAAGGTTCCTCATGTTGTTTCGGTTGGTTATACTCGGGGACCGATGACTATGACCCGACCCGACCCATTCAATTTCAGCTCAACAACCAAAACCCATTTTCACACTCAATCCACAAAACTCCAACTCCACCATCTTCTTCATCTTCCTCCTCCGTCGCTTCCTTCACCAGTTCACCTGCACCCAAAAACGACGACGTTTTTTCCTCCCGCCATGGAAACTCCATCTCCTCCCTCCCTAAACTTGCGGGCAGTCCTCACCGAAACCAGACGCATCATCAACGCCCACTCCCGCCACTTCCTCGCCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCATCCACCGTCTACCCCACTCTCCACAACCTCCTCATCTCCGATCATCCACTCATAACCTCCCAAAAATTCTTCACCTCTTCCGATTCTGCCCCTCCTCCCCTCCTCACCAAACCCCTCCTCCTCGCCCTCGCCTTGGCCCTCTTCGTCTTCGTCTTCTCCCTCTCCGCTCTCGGCTCCATCACCTACTCCGTCTTCCACGGCTTCTACGGCCGCCCCGTCAAGCTCTTATCCGCCGTCAACTCCGTCAGGCTCTCCTTTTTTCCGCTGCTCGGTACTGTTATTGCTTGTCAGCTCATCTTCATGCTAATCGCTGTTGTCGCAGGACTGTTCTTGTTCTTGTTTATCGGAGTTTTCGAGATGATTGGATTGGAAATGGAGCTATCCTCGCCGTATTTCGTTGGGCTGTTCATCGTCGTTGCGATTATAACGCTGGTTGTTTTGCTGTATCTGCAAGTGAATTGGACTCTAGCTGGGGTAGTTTCTGTGGTCGAGCCACGTTGGGGGTTCGGCGCGTTGAGGAGGAGTGCGGATTTGATGAGGGGAATGCGAGGGGTGGGGCTGTGGCTGATGGTGTTTTTCGGGGTTTGTAGTGGGGTTTTGGGGTTATGCAGCTCTGTTTCGTATGAGTGGAGGAGTCGGGACGGATTGAGGAATGTGGTGATGATTGTGTTGTGTTCGATGGGTGTTATGGTTGTGCTGCTGTATCATGCTGCGGCGAATACGGTGCTGTATATGTATTGCAAGGCTGTGAATGGAGAGCTTGCGTTAGAGATTGCGGAGGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTTGATGATGGGAAGGTTCCTCATGTTGTTTCGGTTGCTTATGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

713

Amino Acids

78.24

Weight (kDa)

7.67

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1703
AarI	CACCTGC	1 cut(s)	1122
Acc36I	ACCTGC	1 cut(s)	1122
AccBSI	CCGCTC	2 cut(s)	428, 1445
AccI	GTMKAC	2 cut(s)	138, 1287
AccII	CGCG	2 cut(s)	629, 1790
AcoI	YGGCCR	2 cut(s)	325, 1486
AcsI	RAATTY	2 cut(s)	194, 1343
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	391, 1552
AfiI	CCNNNNNNNGG	7 cut(s)	78, 250, 378, 617, 1411, 1547, 1778
AgsI	TTSAA	1 cut(s)	1009
AjnI	CCWGG	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	124, 290
Ama87I	CYCGRG	1 cut(s)	972
AoxI	GGCC	4 cut(s)	252, 325, 1413, 1486
ApeKI	GCWGC	7 cut(s)	382, 726, 827, 1543, 1887, 1975, 1988
ApoI	RAATTY	2 cut(s)	194, 1343
AspLEI	GCGC	2 cut(s)	629, 1790
AspS9I	GGNCC	3 cut(s)	253, 977, 1414
AvaI	CYCGRG	1 cut(s)	972
AvaII	GGWCC	1 cut(s)	977
BbsI	GAAGAC	8 cut(s)	97, 256, 262, 301, 1246, 1417, 1423, 1462
BbvI	GCAGC	7 cut(s)	369, 738, 814, 1530, 1899, 1962, 1975
BceAI	ACGGC	7 cut(s)	331, 340, 490, 1492, 1496, 1501, 1651
BcgI	CGANNNNNNTGC	6 cut(s)	526, 560, 823, 857, 1984, 2018
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	124, 290
BfaI	CTAG	1 cut(s)	1745
BfuAI	ACCTGC	1 cut(s)	1122
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	972
BmgT120I	GGNCC	3 cut(s)	253, 977, 1414
BmiI	GGNNCC	5 cut(s)	292, 945, 978, 1453, 2106
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	69, 1218
BpiI	GAAGAC	8 cut(s)	97, 256, 262, 301, 1246, 1417, 1423, 1462
BplI	GAGNNNNNCTC	4 cut(s)	485, 517, 1646, 1678
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	5 cut(s)	249, 313, 1149, 1410, 1474
Bsc4I	CCNNNNNNNGG	7 cut(s)	78, 250, 378, 617, 1411, 1547, 1778
Bse1I	ACTGG	1 cut(s)	1106
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	5 cut(s)	249, 313, 1149, 1410, 1474
BseGI	GGATG	2 cut(s)	1277, 1321
BseLI	CCNNNNNNNGG	7 cut(s)	78, 250, 378, 617, 1411, 1547, 1778
BseNI	ACTGG	1 cut(s)	1106
BseX3I	CGGCCG	2 cut(s)	325, 1486
BseXI	GCAGC	7 cut(s)	369, 738, 814, 1530, 1899, 1962, 1975
BseYI	CCCAGC	2 cut(s)	587, 1748
BsgI	GTGCAG	2 cut(s)	115, 1100
Bsh1236I	CGCG	2 cut(s)	629, 1790
Bsh1285I	CGRYCG	2 cut(s)	328, 1489
BshFI	GGCC	4 cut(s)	254, 327, 1415, 1488
BsiEI	CGRYCG	2 cut(s)	328, 1489
BsiHKCI	CYCGRG	1 cut(s)	972
BslFI	GGGAC	3 cut(s)	770, 990, 1931
BslI	CCNNNNNNNGG	7 cut(s)	78, 250, 378, 617, 1411, 1547, 1778
BsmAI	GTCTC	2 cut(s)	124, 290
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	3 cut(s)	770, 990, 1931
BsmI	GAATGC	2 cut(s)	666, 1827
BsnI	GGCC	4 cut(s)	254, 327, 1415, 1488
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	972
Bsp143I	GATC	3 cut(s)	169, 459, 1318
Bsp19I	CCATGG	1 cut(s)	1149
BspANI	GGCC	4 cut(s)	254, 327, 1415, 1488
BspFNI	CGCG	2 cut(s)	629, 1790
BspLI	GGNNCC	5 cut(s)	292, 945, 978, 1453, 2106
BspMI	ACCTGC	1 cut(s)	1122
BspTNI	GGTCTC	1 cut(s)	290
BsrBI	CCGCTC	2 cut(s)	428, 1445
BsrI	ACTGG	1 cut(s)	1106
BssECI	CCNNGG	5 cut(s)	249, 313, 1149, 1410, 1474
BssMI	GATC	3 cut(s)	169, 459, 1318
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	3 cut(s)	249, 1149, 1410
Bst2UI	CCWGG	1 cut(s)	79
Bst6I	CTCTTC	4 cut(s)	211, 284, 1360, 1424
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	6 cut(s)	907, 923, 1185, 2040, 2068, 2084
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	3 cut(s)	313, 1149, 1474
BstF5I	GGATG	2 cut(s)	1277, 1321
BstFNI	CGCG	2 cut(s)	629, 1790
BstHHI	GCGC	2 cut(s)	629, 1790
BstKTI	GATC	3 cut(s)	172, 462, 1321
BstMAI	GTCTC	2 cut(s)	124, 290
BstMBI	GATC	3 cut(s)	169, 459, 1318
BstMCI	CGRYCG	2 cut(s)	328, 1489
BstMWI	GCNNNNNNNGC	8 cut(s)	324, 434, 502, 565, 1485, 1595, 1663, 1726
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstUI	CGCG	2 cut(s)	629, 1790
BstV1I	GCAGC	7 cut(s)	369, 738, 814, 1530, 1899, 1962, 1975
BstV2I	GAAGAC	8 cut(s)	97, 256, 262, 301, 1246, 1417, 1423, 1462
BstZI	CGGCCG	2 cut(s)	325, 1486
BsuRI	GGCC	4 cut(s)	254, 327, 1415, 1488
BtgI	CCRYGG	3 cut(s)	313, 1149, 1474
BtsCI	GGATG	2 cut(s)	1277, 1321
BveI	ACCTGC	1 cut(s)	1122
Cac8I	GCNNGC	6 cut(s)	907, 923, 1185, 2040, 2068, 2084
CfoI	GCGC	2 cut(s)	629, 1790
Cfr13I	GGNCC	3 cut(s)	253, 977, 1414
CseI	GACGC	2 cut(s)	77, 1215
Csp6I	GTAC	2 cut(s)	390, 1551
CviAII	CATG	6 cut(s)	824, 950, 1150, 1579, 1985, 2111
CviQI	GTAC	2 cut(s)	390, 1551
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	3 cut(s)	171, 461, 1320
DpnII	GATC	3 cut(s)	169, 459, 1318
EaeI	YGGCCR	2 cut(s)	325, 1486
EagI	CGGCCG	2 cut(s)	325, 1486
Eam1104I	CTCTTC	4 cut(s)	211, 284, 1360, 1424
EarI	CTCTTC	4 cut(s)	211, 284, 1360, 1424
EciI	GGCGGA	1 cut(s)	1498
EclXI	CGGCCG	2 cut(s)	325, 1486
Eco130I	CCWWGG	3 cut(s)	249, 1149, 1410
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	977
Eco52I	CGGCCG	2 cut(s)	325, 1486
Eco88I	CYCGRG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	3 cut(s)	249, 1149, 1410
ErhI	CCWWGG	3 cut(s)	249, 1149, 1410
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	6 cut(s)	827, 953, 1153, 1582, 1988, 2114
FaqI	GGGAC	3 cut(s)	770, 990, 1931
FatI	CATG	6 cut(s)	823, 949, 1149, 1578, 1984, 2110
FauI	CCCGC	3 cut(s)	1153, 1176, 1235
FblI	GTMKAC	2 cut(s)	138, 1287
FokI	GGATG	2 cut(s)	1264, 1308
FspBI	CTAG	1 cut(s)	1745
GlaI	GCGC	2 cut(s)	628, 1789
GsaI	CCCAGC	2 cut(s)	591, 1752
HaeIII	GGCC	4 cut(s)	254, 327, 1415, 1488
HgaI	GACGC	2 cut(s)	77, 1215
HhaI	GCGC	2 cut(s)	629, 1790
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	6 cut(s)	827, 953, 1153, 1582, 1988, 2114
Hin6I	GCGC	2 cut(s)	627, 1788
HinP1I	GCGC	2 cut(s)	627, 1788
HincII	GTYRAC	2 cut(s)	355, 1516
HindII	GTYRAC	2 cut(s)	355, 1516
HinfI	GANTC	5 cut(s)	212, 580, 1361, 1741, 1912
Hpy166II	GTNNAC	6 cut(s)	36, 139, 355, 1111, 1288, 1516
Hpy188I	TCNGA	6 cut(s)	169, 211, 464, 1318, 1360, 1625
Hpy188III	TCNNGA	4 cut(s)	472, 755, 1633, 1916
Hpy8I	GTNNAC	6 cut(s)	36, 139, 355, 1111, 1288, 1516
Hpy99I	CGWCG	7 cut(s)	71, 799, 1096, 1132, 1135, 1253, 1694
HpyAV	CCTTC	5 cut(s)	109, 934, 1110, 1282, 2095
HpyCH4IV	ACGT	2 cut(s)	1133, 1774
HpyCH4V	TGCA	9 cut(s)	132, 568, 726, 858, 905, 1117, 1729, 1887, 2019
HpyF10VI	GCNNNNNNNGC	8 cut(s)	324, 434, 502, 565, 1485, 1595, 1663, 1726
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	2 cut(s)	1133, 1774
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	827, 953, 1153, 1582, 1988, 2114
HspAI	GCGC	2 cut(s)	627, 1788
Kzo9I	GATC	3 cut(s)	169, 459, 1318
LmnI	GCTCC	4 cut(s)	296, 493, 1457, 1654
Lsp1109I	GCAGC	7 cut(s)	369, 738, 814, 1530, 1899, 1962, 1975
LweI	GCATC	2 cut(s)	69, 1218
MaeI	CTAG	1 cut(s)	1745
MaeII	ACGT	2 cut(s)	1133, 1774
MalI	GATC	3 cut(s)	171, 461, 1320
MbiI	CCGCTC	2 cut(s)	428, 1445
MboI	GATC	3 cut(s)	169, 459, 1318
MluCI	AATT	5 cut(s)	194, 574, 1009, 1343, 1735
MlyI	GAGTC	3 cut(s)	574, 1735, 1921
MmeI	TCCRAC	3 cut(s)	864, 1084, 2113
MslI	CAYNNNNRTG	1 cut(s)	1577
MspA1I	CMGCKG	2 cut(s)	350, 1543
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	2 cut(s)	666, 1827
MvaI	CCWGG	1 cut(s)	79
MvnI	CGCG	2 cut(s)	629, 1790
MwoI	GCNNNNNNNGC	8 cut(s)	324, 434, 502, 565, 1485, 1595, 1663, 1726
NcoI	CCATGG	1 cut(s)	1149
NdeII	GATC	3 cut(s)	169, 459, 1318
NlaIII	CATG	6 cut(s)	827, 953, 1153, 1582, 1988, 2114
NlaIV	GGNNCC	5 cut(s)	292, 945, 978, 1453, 2106
NmeAIII	GCCGAG	2 cut(s)	267, 1428
PaqCI	CACCTGC	1 cut(s)	1122
PcsI	WCGNNNNNNNCGW	5 cut(s)	330, 468, 1245, 1491, 1629
PctI	GAATGC	2 cut(s)	666, 1827
PfeI	GAWTC	2 cut(s)	212, 1361
PleI	GAGTC	3 cut(s)	574, 1735, 1920
PpsI	GAGTC	3 cut(s)	574, 1735, 1920
PsiI	TTATAA	1 cut(s)	1703
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	2 cut(s)	587, 1748
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	5 cut(s)	292, 945, 978, 1453, 2106
PspPI	GGNCC	3 cut(s)	253, 977, 1414
RsaI	GTAC	2 cut(s)	391, 1552
RsaNI	GTAC	2 cut(s)	390, 1551
RseI	CAYNNNNRTG	1 cut(s)	1577
Sau3AI	GATC	3 cut(s)	169, 459, 1318
Sau96I	GGNCC	3 cut(s)	253, 977, 1414
SchI	GAGTC	3 cut(s)	574, 1735, 1921
ScrFI	CCNGG	1 cut(s)	79
SfaNI	GCATC	2 cut(s)	69, 1218
SinI	GGWCC	1 cut(s)	977
SmiMI	CAYNNNNRTG	1 cut(s)	1577
Sse9I	AATT	5 cut(s)	194, 574, 1009, 1343, 1735
SspMI	CTAG	1 cut(s)	1745
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	3 cut(s)	249, 1149, 1410
TaiI	ACGT	2 cut(s)	1136, 1777
TaqI	TCGA	8 cut(s)	66, 471, 606, 764, 794, 1632, 1767, 1955
TaqII	GACCGA	2 cut(s)	272, 994
TasI	AATT	5 cut(s)	194, 574, 1009, 1343, 1735
TauI	GCSGC	4 cut(s)	330, 833, 1491, 1994
TfiI	GAWTC	2 cut(s)	212, 1361
TseI	GCWGC	7 cut(s)	382, 726, 827, 1543, 1887, 1975, 1988
TspDTI	ATGAA	4 cut(s)	514, 1067, 1567, 1675
TspGWI	ACGGA	7 cut(s)	295, 349, 1080, 1237, 1456, 1510, 1935
VpaK11BI	GGWCC	1 cut(s)	977
XapI	RAATTY	2 cut(s)	194, 1343
XmiI	GTMKAC	2 cut(s)	138, 1287
XspI	CTAG	1 cut(s)	1745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.