Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Forward (+)

6126819 .. 6127829

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCAACTCCATCAACACCCCTAAACCTCTGGACCATCCTCACCGAATCGAAGCGCATCATCAACGCCCACTCCCGCCACTTCTTGGCCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCCTCCGTCGTCTACTCAACTCTTCACAACCTTATCGCCGATCGTATACCGCACAATTCCCAAAAATTCTTCAGTATTGACCAACCCTCCTCCCTCCCCACCCCCAAGACCCTACTCCTCGTTCTCGCTTTCGCCCTCTTCCTCTTCGTCTTCGTCTTCTCTCTCTTCGCACTCGGCTCAATCACCTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCCGCTGTCCGATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTAGCTTGCCAGATCGTGTTTTTGTTGGTTGTTCTTGTTGCTGTGCTGTTCTTGTTCTTGGTGGTTGGAGTTTTTGAGATGGTTGGCCTCGAAATGGAGTTCTCTTCGCCTTATTTCGCTGGGCTCTGTGTTGTGGTTGCGATTCCTCTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTAGCCGGTGTAGTCGCTGTGGTCGAACCGCGTTGGGGATTTAACGCATTGAGTCGGAGTGCGAATCTGATCCAGGGAATGCGAGGGGTGGCGTTGTCGTTGATTGTGTTTTTCGGGGCGTTGTCTGGGATTCTAGGATTCTGCAGCACGGTTTCGGAGTTGGGTTTGGATGGGGCTACTGATGGGTGGAGGAATTGGAAGAGTCTGGCATTTGTGTTGAAGATTGTGGTGTTTTCGACGGCTCATATGCTGGTACTCCTCTACCATGCTGCTGCGAATACGGTGCTGTTTATGTATTGCAAGGCTGTGCAAGGAGAGCTTGCGTTGGAAATTGCTGAAGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCTATGTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

36.93

Weight (kDa)

8.33

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	2 cut(s)	135, 169
AccII	CGCG	1 cut(s)	622
AciI	CCGC	5 cut(s)	76, 173, 337, 357, 620
AclWI	GGATC	2 cut(s)	360, 655
AcoI	YGGCCR	2 cut(s)	334, 386
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	178, 948
AfaI	GTAC	2 cut(s)	400, 846
AfiI	CCNNNNNNNGG	4 cut(s)	85, 395, 499, 626
AgsI	TTSAA	2 cut(s)	578, 811
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	2 cut(s)	410, 910
AluI	AGCT	2 cut(s)	410, 910
AlwI	GGATC	2 cut(s)	360, 655
AoxI	GGCC	4 cut(s)	87, 334, 386, 490
ApeKI	GCWGC	3 cut(s)	735, 860, 863
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	33, 88
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	34, 298
AvaII	GGWCC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	531
BbsI	GAAGAC	4 cut(s)	94, 265, 271, 310
BbvI	GCAGC	3 cut(s)	747, 847, 850
BccI	CCATC	7 cut(s)	19, 44, 122, 478, 755, 767, 962
BceAI	ACGGC	2 cut(s)	340, 846
BcgI	CGANNNNNNTGC	2 cut(s)	856, 890
BciT130I	CCWGG	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	341
BfaI	CTAG	3 cut(s)	407, 593, 725
BfmI	CTRYAG	2 cut(s)	310, 733
BisI	GCNGC	4 cut(s)	337, 736, 861, 864
BlsI	GCNGC	4 cut(s)	338, 737, 862, 865
Bme1390I	CCNGG	2 cut(s)	341, 665
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 88
BmrFI	CCNGG	2 cut(s)	341, 665
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	4 cut(s)	94, 265, 271, 310
BpuMI	CCSGG	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	322, 664
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 395, 499, 626
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	322, 664
BseGI	GGATG	2 cut(s)	36, 766
BseLI	CCNNNNNNNGG	4 cut(s)	85, 395, 499, 626
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	5 cut(s)	98, 115, 202, 230, 839
BseXI	GCAGC	3 cut(s)	747, 847, 850
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	622
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	89, 336, 388, 492
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	341, 597
BslI	CCNNNNNNNGG	4 cut(s)	85, 395, 499, 626
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	4 cut(s)	89, 336, 388, 492
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	163, 365, 417, 660
BspACI	CCGC	5 cut(s)	76, 173, 337, 357, 620
BspANI	GGCC	4 cut(s)	89, 336, 388, 492
BspFNI	CGCG	1 cut(s)	622
BspMAI	CTGCAG	1 cut(s)	737
BspPI	GGATC	2 cut(s)	360, 655
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	322, 664
BssMI	GATC	4 cut(s)	163, 365, 417, 660
BssNAI	GTATAC	1 cut(s)	170
Bst1107I	GTATAC	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	403, 742, 874
Bst6I	CTCTTC	7 cut(s)	150, 266, 272, 293, 514, 785, 924
BstC8I	GCNNGC	4 cut(s)	412, 912, 940, 956
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	36, 766
BstFNI	CGCG	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	166, 368, 420, 663
BstMBI	GATC	4 cut(s)	163, 365, 417, 660
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 907
BstNI	CCWGG	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	339, 663
BstSFI	CTRYAG	2 cut(s)	310, 733
BstUI	CGCG	1 cut(s)	622
BstV1I	GCAGC	3 cut(s)	747, 847, 850
BstV2I	GAAGAC	4 cut(s)	94, 265, 271, 310
BstZ17I	GTATAC	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	89, 336, 388, 492
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	36, 766
Cac8I	GCNNGC	4 cut(s)	412, 912, 940, 956
CfoI	GCGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	33, 88
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	399, 845
CviAII	CATG	1 cut(s)	857
CviQI	GTAC	2 cut(s)	399, 845
DpnI	GATC	4 cut(s)	165, 367, 419, 662
DpnII	GATC	4 cut(s)	163, 365, 417, 660
EaeI	YGGCCR	2 cut(s)	334, 386
Eam1104I	CTCTTC	7 cut(s)	150, 266, 272, 293, 514, 785, 924
EarI	CTCTTC	7 cut(s)	150, 266, 272, 293, 514, 785, 924
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	178, 948
EcoRII	CCWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	531
FaeI	CATG	1 cut(s)	860
FaiI	YATR	9 cut(s)	170, 333, 353, 837, 839, 858, 884, 948, 1002
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FatI	CATG	1 cut(s)	856
FauI	CCCGC	1 cut(s)	83
FauNDI	CATATG	1 cut(s)	837
FblI	GTMKAC	2 cut(s)	135, 169
Fnu4HI	GCNGC	4 cut(s)	337, 736, 861, 864
FokI	GGATG	2 cut(s)	23, 773
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	4 cut(s)	337, 736, 861, 864
FspBI	CTAG	3 cut(s)	407, 593, 725
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	4 cut(s)	337, 736, 861, 864
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	89, 336, 388, 492
HapII	CCGG	2 cut(s)	341, 597
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	860
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	8 cut(s)	47, 547, 589, 643, 655, 721, 729, 793
HpaII	CCGG	2 cut(s)	341, 597
HphI	GGTGA	2 cut(s)	34, 298
Hpy166II	GTNNAC	2 cut(s)	136, 170
Hpy188I	TCNGA	4 cut(s)	365, 648, 660, 748
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	136, 170
Hpy99I	CGWCG	3 cut(s)	101, 134, 832
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	3 cut(s)	403, 742, 874
HpyCH4V	TGCA	3 cut(s)	735, 891, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 907
Hsp92II	CATG	1 cut(s)	860
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	163, 365, 417, 660
Lsp1109I	GCAGC	3 cut(s)	747, 847, 850
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	3 cut(s)	407, 593, 725
MalI	GATC	4 cut(s)	165, 367, 419, 662
MboI	GATC	4 cut(s)	163, 365, 417, 660
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	5 cut(s)	178, 188, 583, 784, 921
MluNI	TGGCCA	1 cut(s)	388
MlyI	GAGTC	3 cut(s)	583, 652, 802
MmeI	TCCRAC	3 cut(s)	451, 626, 897
Mox20I	TGGCCA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	341, 597
MspR9I	CCNGG	2 cut(s)	341, 665
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	622
MwoI	GCNNNNNNNGC	2 cut(s)	333, 907
NciI	CCSGG	1 cut(s)	341
NdeI	CATATG	1 cut(s)	837
NdeII	GATC	4 cut(s)	163, 365, 417, 660
NlaIII	CATG	1 cut(s)	860
NmeAIII	GCCGAG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	5 cut(s)	47, 547, 655, 721, 729
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	338, 737, 862, 865
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	3 cut(s)	583, 651, 801
PpsI	GAGTC	3 cut(s)	583, 651, 801
Psp6I	CCWGG	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	33, 88
PstI	CTGCAG	1 cut(s)	737
PvuI	CGATCG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	400, 846
RsaNI	GTAC	2 cut(s)	399, 845
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	4 cut(s)	337, 736, 861, 864
Sau3AI	GATC	4 cut(s)	163, 365, 417, 660
Sau96I	GGNCC	2 cut(s)	33, 88
SchI	GAGTC	3 cut(s)	583, 652, 802
ScrFI	CCNGG	2 cut(s)	341, 665
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	6 cut(s)	30, 156, 311, 378, 412, 912
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	2 cut(s)	310, 733
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	178, 188, 583, 784, 921
SsiI	CCGC	5 cut(s)	76, 173, 337, 357, 620
SspMI	CTAG	3 cut(s)	407, 593, 725
StyD4I	CCNGG	2 cut(s)	339, 663
TaaI	ACNGT	3 cut(s)	403, 742, 874
TaqI	TCGA	6 cut(s)	50, 495, 615, 827, 963, 1006
TasI	AATT	5 cut(s)	178, 188, 583, 784, 921
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	5 cut(s)	47, 547, 655, 721, 729
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TseI	GCWGC	3 cut(s)	735, 860, 863
TspDTI	ATGAA	1 cut(s)	340
TspGWI	ACGGA	3 cut(s)	85, 118, 358
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	2 cut(s)	135, 169
XspI	CTAG	3 cut(s)	407, 593, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.