Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8048828.1

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 538

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8048828.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggcttctccacccctaaacctctggaccatcctcaccgaatcgaagcgcatcctcaccgaatcgaagcgcatcatcaacgcccactcccgccacttcttgggcctctccgtcgtcttcctcctccccatctccttctcctccgtcgtctacccaactctccacaacctcatcgccgatcgtataccgcacaattcccaaaaattcttcctcagtattgaccaaccctcctccctccccaccaccaagaccctactcctcgctctcgccttcgccctcttcgtcttcgtcttctctctcttcgctctcggctcaatcacctacagcgtcttccacggcttctatggccgcccggtcaagttcgtatccgctgtccgatccgtcagggtttcgttctggccagtattgggtactgttcttgcttcccacatcgtgtttttgttggtttttcttgttgctgtgctcttcttgttcttggtggttggagtttttgagatggttggcctcgaaatggagttctcttcgccttatttcgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.07

Weight (kDa)

9.89

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccI	GTMKAC	2 cut(s)	150, 184
AciI	CCGC	4 cut(s)	91, 188, 349, 369
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	346, 398
AcsI	RAATTY	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	100, 407, 511
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	4 cut(s)	103, 346, 398, 502
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	51, 72
AspS9I	GGNCC	2 cut(s)	27, 103
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	28, 49, 310
AvaII	GGWCC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	400
BbsI	GAAGAC	4 cut(s)	109, 277, 283, 322
Bbv12I	GWGCWC	1 cut(s)	465
BccI	CCATC	3 cut(s)	38, 137, 490
BceAI	ACGGC	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 103
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	60, 81
BpiI	GAAGAC	4 cut(s)	109, 277, 283, 322
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 407, 511
Bse1I	ACTGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	30, 51
BseLI	CCNNNNNNNGG	3 cut(s)	100, 407, 511
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	4 cut(s)	113, 130, 220, 248
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	4 cut(s)	105, 348, 400, 504
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	3 cut(s)	100, 407, 511
BsnI	GGCC	4 cut(s)	105, 348, 400, 504
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	178, 377
BspACI	CCGC	4 cut(s)	91, 188, 349, 369
BspANI	GGCC	4 cut(s)	105, 348, 400, 504
BspCNI	CTCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	372
BspQI	GCTCTTC	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	178, 377
BssNAI	GTATAC	1 cut(s)	185
Bst1107I	GTATAC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	4 cut(s)	284, 305, 470, 526
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	30, 51
BstHHI	GCGC	2 cut(s)	51, 72
BstKTI	GATC	2 cut(s)	181, 380
BstMBI	GATC	2 cut(s)	178, 377
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	322
BstV2I	GAAGAC	4 cut(s)	109, 277, 283, 322
BstZ17I	GTATAC	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	105, 348, 400, 504
BtgI	CCRYGG	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	30, 51
CfoI	GCGC	2 cut(s)	51, 72
Cfr13I	GGNCC	2 cut(s)	27, 103
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	411
CviJI	RGCY	7 cut(s)	5, 105, 312, 339, 348, 400, 504
CviKI_1	RGCY	7 cut(s)	5, 105, 312, 339, 348, 400, 504
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	2 cut(s)	180, 379
DpnII	GATC	2 cut(s)	178, 377
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	346, 398
Eam1104I	CTCTTC	4 cut(s)	284, 305, 470, 526
EarI	CTCTTC	4 cut(s)	284, 305, 470, 526
Eco47I	GGWCC	1 cut(s)	27
FaiI	YATR	2 cut(s)	185, 345
FauI	CCCGC	1 cut(s)	98
FblI	GTMKAC	2 cut(s)	150, 184
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	2 cut(s)	17, 38
Fsp4HI	GCNGC	1 cut(s)	349
GlaI	GCGC	2 cut(s)	50, 71
GluI	GCNGC	1 cut(s)	349
HaeIII	GGCC	4 cut(s)	105, 348, 400, 504
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	2 cut(s)	51, 72
Hin6I	GCGC	2 cut(s)	49, 70
HinP1I	GCGC	2 cut(s)	49, 70
HinfI	GANTC	2 cut(s)	41, 62
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	3 cut(s)	28, 49, 310
Hpy166II	GTNNAC	2 cut(s)	151, 185
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	2 cut(s)	151, 185
Hpy99I	CGWCG	2 cut(s)	116, 149
HpyAV	CCTTC	2 cut(s)	145, 280
HpyCH4III	ACNGT	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	212
HspAI	GCGC	2 cut(s)	49, 70
Kzo9I	GATC	2 cut(s)	178, 377
LguI	GCTCTTC	1 cut(s)	470
LpnPI	CCDG	5 cut(s)	10, 366, 370, 382, 414
LweI	GCATC	2 cut(s)	60, 81
MalI	GATC	2 cut(s)	180, 379
MboI	GATC	2 cut(s)	178, 377
MboII	GAAGA	9 cut(s)	109, 199, 271, 277, 283, 292, 322, 457, 513
MhlI	GDGCHC	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	2 cut(s)	193, 203
MluNI	TGGCCA	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	463
Mox20I	TGGCCA	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	400
Msp20I	TGGCCA	1 cut(s)	400
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	178, 377
NmeAIII	GCCGAG	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	41, 62
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	350
Ple19I	CGATCG	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	27, 103
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	470
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	2 cut(s)	178, 377
Sau96I	GGNCC	2 cut(s)	27, 103
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	3 cut(s)	24, 171, 323
SfaNI	GCATC	2 cut(s)	60, 81
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	193, 203
SsiI	CCGC	4 cut(s)	91, 188, 349, 369
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	44, 65, 507
TasI	AATT	2 cut(s)	193, 203
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	41, 62
TspGWI	ACGGA	3 cut(s)	100, 133, 370
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	150, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.