Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8116372.1

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 555

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8116372.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgcgaggggtggcgctgtcgttggtggtgtttttcggggccttgtctgggattctaggattctgcagcacggtttcggagttgggattggatggggctactactgatgggtggaggaactggaagagtctggcatttgtgttcaagattgtggtgttttcgacggctcatatgctggtactgctctatcatgctgctgccaatacggtgctgtatatgtattgcaaggctgtgcatggagagcttgcgttggaaattgctgaagagtttgcgagcgagtatgtgagcctgcctttcgatgatggaaaacttcctcatcttgtttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

5.38

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	66, 194, 197
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	78, 181, 184
BccI	CCATC	3 cut(s)	86, 101, 296
BceAI	ACGGC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	3 cut(s)	67, 195, 198
BlsI	GCNGC	3 cut(s)	68, 196, 199
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	78, 181, 184
BshFI	GGCC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	73, 208
Bst6I	CTCTTC	2 cut(s)	119, 258
BstC8I	GCNNGC	3 cut(s)	246, 274, 290
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 241
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	78, 181, 184
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	3 cut(s)	246, 274, 290
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	191, 236
CviJI	RGCY	6 cut(s)	41, 98, 167, 230, 244, 288
CviKI_1	RGCY	6 cut(s)	41, 98, 167, 230, 244, 288
CviQI	GTAC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	119, 258
EarI	CTCTTC	2 cut(s)	119, 258
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	39
FaeI	CATG	2 cut(s)	194, 239
FaiI	YATR	7 cut(s)	171, 173, 192, 216, 218, 237, 282
FatI	CATG	2 cut(s)	190, 235
FauNDI	CATATG	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	67, 195, 198
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	67, 195, 198
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	67, 195, 198
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	194, 239
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	52, 60, 127
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	73, 208
HpyCH4V	TGCA	3 cut(s)	66, 225, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 241
Hsp92II	CATG	2 cut(s)	194, 239
HspAI	GCGC	1 cut(s)	14
LpnPI	CCDG	5 cut(s)	33, 106, 116, 161, 302
Lsp1109I	GCAGC	3 cut(s)	78, 181, 184
MaeI	CTAG	1 cut(s)	56
MboII	GAAGA	2 cut(s)	136, 275
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	108, 324
MwoI	GCNNNNNNNGC	2 cut(s)	181, 241
NdeI	CATATG	1 cut(s)	171
NlaIII	CATG	2 cut(s)	194, 239
NlaIV	GGNNCC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	52, 60
PkrI	GCNGC	3 cut(s)	68, 196, 199
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SatI	GCNGC	3 cut(s)	67, 195, 198
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	136
SetI	ASST	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	64
Sse9I	AATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	73, 208
TaqI	TCGA	2 cut(s)	161, 297
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	52, 60
TseI	GCWGC	3 cut(s)	66, 194, 197
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.