Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00270

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

254271 .. 255759

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCATTTGTGACCCAGTCCAACCCATTCATTTGTTATCCCAAACCCAGTTCACGTTCACACTTGTATACAAAAACCCAAGCTCTTCCATCCAAATTATCCAACTTCTTGGCAACTCCGTCAAGTTCTTCCATACCAAACCACGACGATTATTCCGCCATGGCAACTCCGTCTCCACCCCTAAACTTTCGGACAATCCTCACCGAATCGAGGCGCATCATCATCGCCCACTCCCGCCACTTCTGGGCTCTCTCCATCGTCTTCCTCCTCCCCATCTCCGTCTCCTCCTTTGTCTACCCAACTCTCCAAAACCTCATCGCCGAATTGTTCAAGATTTCCAACTTTGACCAACCCTCTCTTCCCACCAAGACCCTACTCCTCGCTCTCGCTTTCGCCCTCTTCGTCTTCGTCGTCTCTCTCTTCGCTATCGGCTCAATCACGTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCGGCTGTCCGATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTTGCTTCCCACATCGTCTTTTTATTGGTTGTTCTTGTTGCTGGGCTGTTCTTGTTCTTGGCGGTTGGATGTTTTGAGATGGTTGGCCTCGAAATGGGGTTCTCTTCGCCTTATTTCGTTGGGCTCTGTGTTGTGGTTGCGATTCCTCTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTGGCTGGTGTAGTTGCTGTCCTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCAAATCTGATCAAGGGAATGCGAGGGGTGGCGTTGTCTTTGATGGTGCTTTTCGGGGCGTGGACTGGGATTTTGGGGTTCTTCATCTCGAAATCTGAGTTGGATTTGGATGGGGCTACTACTGATGGGTGGATGAATTGGATGACTTTGGCATCTGTTTATCTGGTTTTGTATTTTTCGATGGGTCATACGCTGGCACTGCTCTATCATGCTGCTGCGAATACGGTGTTGTTTTTGTATTGCAAGACTCTGCATGGAGAGCTTGCGTTGGAGATTGGTGAAAAGTTTGCGACCGAGTACGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCAATGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

41.88

Weight (kDa)

8.8

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	68, 294
AccII	CGCG	1 cut(s)	754
AciI	CCGC	5 cut(s)	156, 235, 469, 599, 752
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	2 cut(s)	466, 518
AfaI	GTAC	3 cut(s)	443, 532, 1082
AfiI	CCNNNNNNNGG	5 cut(s)	210, 244, 527, 631, 758
AgsI	TTSAA	2 cut(s)	331, 710
AjuI	GAANNNNNNNTTGG	4 cut(s)	342, 374, 866, 898
AluBI	AGCT	2 cut(s)	83, 1045
AluI	AGCT	2 cut(s)	83, 1045
Alw26I	GTCTC	3 cut(s)	177, 286, 418
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	3 cut(s)	466, 518, 622
ApeKI	GCWGC	2 cut(s)	995, 998
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
AspLEI	GCGC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	193, 1073
BalI	TGGCCA	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	250, 663
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbsI	GAAGAC	3 cut(s)	253, 397, 442
BbvI	GCAGC	2 cut(s)	982, 985
BccI	CCATC	9 cut(s)	97, 263, 281, 610, 820, 887, 902, 958, 1097
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	3 cut(s)	177, 286, 418
BisI	GCNGC	3 cut(s)	469, 996, 999
BlsI	GCNGC	3 cut(s)	470, 997, 1000
Bme1390I	CCNGG	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	473
BmrI	ACTGGG	3 cut(s)	10, 42, 858
BmsI	GCATC	2 cut(s)	225, 944
BmuI	ACTGGG	3 cut(s)	10, 42, 858
BpiI	GAAGAC	3 cut(s)	253, 397, 442
BpuMI	CCSGG	1 cut(s)	473
BsaAI	YACGTR	2 cut(s)	441, 1084
BsaJI	CCNNGG	2 cut(s)	159, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	5 cut(s)	210, 244, 527, 631, 758
Bse1I	ACTGG	4 cut(s)	16, 48, 521, 853
BseDI	CCNNGG	2 cut(s)	159, 454
BseGI	GGATG	5 cut(s)	89, 611, 898, 921, 930
BseLI	CCNNNNNNNGG	5 cut(s)	210, 244, 527, 631, 758
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	4 cut(s)	16, 48, 521, 853
BseRI	GAGGAG	3 cut(s)	257, 274, 368
BseXI	GCAGC	2 cut(s)	982, 985
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	754
Bsh1285I	CGRYCG	1 cut(s)	1077
BshFI	GGCC	3 cut(s)	468, 520, 624
BsiEI	CGRYCG	1 cut(s)	1077
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	5 cut(s)	210, 244, 527, 631, 758
BsmAI	GTCTC	3 cut(s)	177, 286, 418
BsmBI	CGTCTC	3 cut(s)	177, 286, 418
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	468, 520, 624
Bsp1286I	GDGCHC	2 cut(s)	250, 663
Bsp143I	GATC	2 cut(s)	497, 792
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	156, 235, 469, 599, 752
BspANI	GGCC	3 cut(s)	468, 520, 624
BspCNI	CTCAG	1 cut(s)	871
BspFNI	CGCG	1 cut(s)	754
BspPI	GGATC	1 cut(s)	492
BspQI	GCTCTTC	1 cut(s)	90
BsrI	ACTGG	4 cut(s)	16, 48, 521, 853
BssECI	CCNNGG	2 cut(s)	159, 454
BssMI	GATC	2 cut(s)	497, 792
BssNAI	GTATAC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	535, 1009
Bst6I	CTCTTC	5 cut(s)	90, 363, 404, 425, 646
BstBAI	YACGTR	2 cut(s)	441, 1084
BstC8I	GCNNGC	3 cut(s)	978, 1047, 1091
BstDEI	CTNAG	1 cut(s)	879
BstDSI	CCRYGG	2 cut(s)	159, 454
BstF5I	GGATG	5 cut(s)	89, 611, 898, 921, 930
BstFNI	CGCG	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	500, 795
BstMAI	GTCTC	3 cut(s)	177, 286, 418
BstMBI	GATC	2 cut(s)	497, 792
BstMCI	CGRYCG	1 cut(s)	1077
BstMWI	GCNNNNNNNGC	3 cut(s)	465, 982, 1042
BstSCI	CCNGG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	754
BstV1I	GCAGC	2 cut(s)	982, 985
BstV2I	GAAGAC	3 cut(s)	253, 397, 442
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	468, 520, 624
BtgI	CCRYGG	2 cut(s)	159, 454
BtgZI	GCGATG	2 cut(s)	208, 301
BtsCI	GGATG	5 cut(s)	89, 611, 898, 921, 930
BtsI	GCAGTG	1 cut(s)	980
BtsIMutI	CAGTG	1 cut(s)	980
Cac8I	GCNNGC	3 cut(s)	978, 1047, 1091
CfoI	GCGC	1 cut(s)	216
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	442, 531, 1081
CviAII	CATG	3 cut(s)	160, 992, 1037
CviQI	GTAC	3 cut(s)	442, 531, 1081
DdeI	CTNAG	1 cut(s)	879
DpnI	GATC	2 cut(s)	499, 794
DpnII	GATC	2 cut(s)	497, 792
EaeI	YGGCCR	2 cut(s)	466, 518
Eam1104I	CTCTTC	5 cut(s)	90, 363, 404, 425, 646
EarI	CTCTTC	5 cut(s)	90, 363, 404, 425, 646
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	250, 663
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	250, 663
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	3 cut(s)	177, 286, 418
FaeI	CATG	3 cut(s)	163, 995, 1040
FaiI	YATR	8 cut(s)	69, 134, 161, 465, 485, 972, 993, 1038
FatI	CATG	3 cut(s)	159, 991, 1036
FauI	CCCGC	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	2 cut(s)	68, 294
Fnu4HI	GCNGC	3 cut(s)	469, 996, 999
FokI	GGATG	5 cut(s)	76, 618, 905, 928, 937
FriOI	GRGCYC	2 cut(s)	250, 663
Fsp4HI	GCNGC	3 cut(s)	469, 996, 999
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	469, 996, 999
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	468, 520, 624
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	163, 995, 1040
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	5 cut(s)	206, 679, 721, 775, 1030
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	193, 1073
Hpy166II	GTNNAC	5 cut(s)	53, 59, 69, 295, 846
Hpy188I	TCNGA	5 cut(s)	192, 497, 780, 792, 880
Hpy188III	TCNNGA	2 cut(s)	331, 871
Hpy8I	GTNNAC	5 cut(s)	53, 59, 69, 295, 846
Hpy99I	CGWCG	2 cut(s)	149, 413
HpyCH4III	ACNGT	2 cut(s)	535, 1009
HpyCH4IV	ACGT	3 cut(s)	55, 440, 1083
HpyCH4V	TGCA	3 cut(s)	785, 1026, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	465, 982, 1042
HpyF3I	CTNAG	1 cut(s)	879
HpySE526I	ACGT	3 cut(s)	55, 440, 1083
Hsp92II	CATG	3 cut(s)	163, 995, 1040
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	2 cut(s)	497, 792
LguI	GCTCTTC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	982, 985
LweI	GCATC	2 cut(s)	225, 944
MaeII	ACGT	3 cut(s)	55, 440, 1083
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	499, 794
MboI	GATC	2 cut(s)	497, 792
MhlI	GDGCHC	2 cut(s)	250, 663
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	4 cut(s)	95, 323, 715, 919
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	3 cut(s)	715, 784, 1024
MmeI	TCCRAC	7 cut(s)	45, 126, 363, 583, 758, 864, 1032
Mox20I	TGGCCA	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	520
MseI	TTAA	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	520
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	807
MvnI	CGCG	1 cut(s)	754
MwoI	GCNNNNNNNGC	3 cut(s)	465, 982, 1042
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	497, 792
NlaIII	CATG	3 cut(s)	163, 995, 1040
NmuCI	GTSAC	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	399, 408
PctI	GAATGC	1 cut(s)	807
PfeI	GAWTC	2 cut(s)	206, 679
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	470, 997, 1000
PleI	GAGTC	3 cut(s)	715, 783, 1024
PpsI	GAGTC	3 cut(s)	715, 783, 1024
Ppu21I	YACGTR	2 cut(s)	441, 1084
PspFI	CCCAGC	1 cut(s)	578
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	3 cut(s)	443, 532, 1082
RsaNI	GTAC	3 cut(s)	442, 531, 1081
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	3 cut(s)	469, 996, 999
Sau3AI	GATC	2 cut(s)	497, 792
SchI	GAGTC	3 cut(s)	715, 784, 1024
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	250, 663
SetI	ASST	7 cut(s)	58, 85, 315, 443, 510, 1047, 1086
SfaNI	GCATC	2 cut(s)	225, 944
Sse9I	AATT	4 cut(s)	95, 323, 715, 919
SsiI	CCGC	5 cut(s)	156, 235, 469, 599, 752
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	535, 1009
TaiI	ACGT	3 cut(s)	58, 443, 1086
TaqI	TCGA	6 cut(s)	209, 627, 747, 872, 962, 1098
TaqII	GACCGA	1 cut(s)	1091
TasI	AATT	4 cut(s)	95, 323, 715, 919
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	206, 679
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	1 cut(s)	987
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	995, 998
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	19, 472, 856, 932
TspGWI	ACGGA	4 cut(s)	108, 159, 268, 490
TspRI	CASTG	1 cut(s)	987
Tth111I	GACNNNGTC	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	2 cut(s)	68, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.