AT3G13160

PPR repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4229829 .. 4231408
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13160.1

Sequence Viewer

Length: 1185 bp
ATGTCGTCTCTCTCTCGCTTTCTCCTTCGTGGCAACTTCAGCTTCAGCACCCACACGAATCGCCGCTTCTTCTCCGCCGTTACCGCTGCTGCAGCCACACCCTCGCCACCCAAACCGTCCCTCATCACCCTCGTAAATGACGAACGCGACCCCAAATTCATCACGGAGAAGTTCAAGAAAGCCTGCCAAGCAGAGTGGTTCCGGAAGAATATAGCTGTCTATGAGAGAACCGTTCGCCGTCTCGCCGCAGCCAAGAAGTTTGAGTGGGTCGAGGAGATCCTGGAGGAGCAGAACAAGTATCCAAACATGTCAAAGGAAGGATTCGTGGCGAGGATTATCAATCTCTATGGACGAGTCGGTATGTTTGAGAATGCACAGAAAGTGTTCGACGAAATGCCTGAGAGAAACTGCAAGAGAACAGCGTTGTCTTTCAACGCATTACTGAATGCCTGTGTGAACTCCAAGAAGTTTGATTTGGTTGAAGGTATCTTCAAGGAGTTGCCAGGTAAGCTCTCGATTGAACCAGATGTTGCATCTTACAATACTTTGATCAAGGGATTGTGTGGAAAGGGTTCCTTCACTGAAGCTGTTGCGTTGATTGATGAGATTGAGAACAAGGGTTTGAAACCTGATCATATCACCTTCAATATACTTTTACATGAGTCGTATACAAAAGGGAAGTTTGAGGAAGGAGAACAGATATGGGCTAGAATGGTAGAGAAGAATGTTAAGCGAGACATCCGTAGTTACAATGCTCGGTTGTTAGGACTAGCCATGGAGAATAAATCAGAAGAGATGGTTAGTCTCTTTGACAAACTTAAGGGTAATGAGCTCAAACCTGATGTTTTCACATTCACTGCCATGATTAAAGGATTTGTCAGTGAAGGAAAATTAGATGAAGCCATAACGTGGTACAAGGAAATCGAGAAGAATGGTTGTCGCCCGTTGAAATTTGTCTTTAACTCATTGCTTCCTGCAATATGTAAGGCGGGCGATTTAGAGTCTGCTTATGAGCTCTGCAAGGAAATATTTGCTAAGCGTCTGCTAGTCGATGAGGCTGTCCTGCAGGAGGTAGTTGATGCATTGGTGAAAGGGTCCAAGCAAGACGAAGCTGAAGAGATTGTCGAGCTAGCAAAGACGAATGACTATTTGCAGTGCAAGCTTCGTCTCTTTCCCAAAGAGTAG

Protein Analysis

394

Amino Acids

44.93

Weight (kDa)

8.25

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 112 - 153 4.5e-08 PPR repeat family
PPR_long PF17177 122 - 252 6.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 127 - 189 5.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 173 - 203 3.5e-08 PPR repeat
PPR_2 PF13041 175 - 220 3.5e-14 PPR repeat family
PPR_3 PF13812 199 - 252 1.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 246 - 293 4.4e-09 PPR repeat family
PPR_3 PF13812 268 - 327 8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 277 - 302 1.5e-06 PPR repeat
PPR_2 PF13041 280 - 315 4.2e-08 PPR repeat family
PPR PF01535 283 - 313 3.8e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 909
AccI GTMKAC 1 cut(s) 668
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 5 cut(s) 64, 75, 84, 246, 989
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 2 cut(s) 155, 950
AcuI CTGAAG 4 cut(s) 22, 28, 603, 1134
AfaI GTAC 1 cut(s) 914
AfiI CCNNNNNNNGG 2 cut(s) 909, 1069
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 8 cut(s) 175, 433, 482, 493, 521, 625, 646, 949
AjnI CCWGG 2 cut(s) 279, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 9 cut(s) 42, 215, 511, 587, 832, 1015, 1112, 1129, 1162
AluI AGCT 9 cut(s) 42, 215, 511, 587, 832, 1015, 1112, 1129, 1162
Alw21I GWGCWC 2 cut(s) 834, 1017
Alw26I GTCTC 5 cut(s) 12, 245, 729, 809, 1172
AlwI GGATC 1 cut(s) 271
Aor13HI TCCGGA 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 86, 89, 92, 248
ApoI RAATTY 2 cut(s) 155, 950
Asp700I GAANNNNTTC 2 cut(s) 383, 571
AspS9I GGNCC 1 cut(s) 1095
AsuHPI GGTGA 3 cut(s) 118, 631, 1099
AsuNHI GCTAGC 1 cut(s) 1129
AvaII GGWCC 1 cut(s) 1095
BanII GRGCYC 2 cut(s) 834, 1017
Bbv12I GWGCWC 2 cut(s) 834, 1017
BbvI GCAGC 4 cut(s) 73, 76, 104, 260
BccI CCATC 1 cut(s) 790
BceAI ACGGC 2 cut(s) 62, 222
BciT130I CCWGG 2 cut(s) 281, 504
BciVI GTATCC 1 cut(s) 309
BclI TGATCA 2 cut(s) 549, 631
BcoDI GTCTC 5 cut(s) 12, 245, 729, 809, 1172
BfaI CTAG 4 cut(s) 708, 770, 1046, 1130
BfmI CTRYAG 2 cut(s) 90, 1064
BfrI CTTAAG 1 cut(s) 818
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 6 cut(s) 64, 87, 90, 93, 246, 249
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 6 cut(s) 65, 88, 91, 94, 247, 250
Bme1390I CCNGG 2 cut(s) 281, 504
Bme18I GGWCC 1 cut(s) 1095
BmgT120I GGNCC 1 cut(s) 1095
BmiI GGNNCC 3 cut(s) 200, 574, 1096
BmrFI CCNGG 2 cut(s) 281, 504
BmsI GCATC 2 cut(s) 542, 1069
BmtI GCTAGC 1 cut(s) 1133
BpmI CTGGAG 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 1035
BsaJI CCNNGG 1 cut(s) 774
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 909, 1069
Bse3DI GCAATG 1 cut(s) 965
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 2 cut(s) 281, 504
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 1 cut(s) 738
BseLI CCNNNNNNNGG 2 cut(s) 909, 1069
BseMI GCAATG 1 cut(s) 965
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 287, 299
BseXI GCAGC 4 cut(s) 73, 76, 104, 260
Bsh1236I CGCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 834, 1017
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 909, 1069
BsmAI GTCTC 5 cut(s) 12, 245, 729, 809, 1172
BsmBI CGTCTC 3 cut(s) 12, 245, 1172
BsmFI GGGAC 1 cut(s) 103
BsmI GAATGC 2 cut(s) 376, 451
Bsp1286I GDGCHC 2 cut(s) 834, 1017
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 276, 549, 631
Bsp1720I GCTNAGC 1 cut(s) 1035
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 5 cut(s) 64, 75, 84, 246, 989
BspCNI CTCAG 1 cut(s) 391
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 200, 574, 1096
BspMAI CTGCAG 2 cut(s) 94, 1068
BspOI GCTAGC 1 cut(s) 1133
BspPI GGATC 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 965
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 3 cut(s) 276, 549, 631
BssNAI GTATAC 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 774
Bst1107I GTATAC 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 281, 504
Bst4CI ACNGT 2 cut(s) 117, 232
Bst6I CTCTTC 2 cut(s) 786, 1110
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 4 cut(s) 184, 991, 1131, 1160
BstDEI CTNAG 2 cut(s) 399, 1035
BstDSI CCRYGG 1 cut(s) 774
BstENI CCTNNNNNAGG 1 cut(s) 1067
BstF5I GGATG 1 cut(s) 738
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 3 cut(s) 279, 552, 634
BstMAI GTCTC 5 cut(s) 12, 245, 729, 809, 1172
BstMBI GATC 3 cut(s) 276, 549, 631
BstMWI GCNNNNNNNGC 6 cut(s) 39, 83, 92, 188, 508, 1159
BstNI CCWGG 2 cut(s) 281, 504
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 279, 502
BstSFI CTRYAG 2 cut(s) 90, 1064
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 73, 76, 104, 260
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BstZ17I GTATAC 1 cut(s) 669
BsuI GTATCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 774
BtsCI GGATG 1 cut(s) 738
BtsI GCAGTG 2 cut(s) 855, 1160
BtsIMutI CAGTG 4 cut(s) 579, 855, 886, 1160
Cac8I GCNNGC 4 cut(s) 184, 991, 1131, 1160
Cfr13I GGNCC 1 cut(s) 1095
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 913
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 4 cut(s) 307, 659, 775, 862
CviQI GTAC 1 cut(s) 913
DdeI CTNAG 2 cut(s) 399, 1035
DpnI GATC 3 cut(s) 278, 551, 633
DpnII GATC 3 cut(s) 276, 549, 631
Eam1104I CTCTTC 2 cut(s) 786, 1110
EarI CTCTTC 2 cut(s) 786, 1110
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 832, 1015
Eco130I CCWWGG 1 cut(s) 774
Eco24I GRGCYC 2 cut(s) 834, 1017
Eco47I GGWCC 1 cut(s) 1095
Eco53kI GAGCTC 2 cut(s) 832, 1015
Eco57I CTGAAG 4 cut(s) 22, 28, 603, 1134
EcoICRI GAGCTC 2 cut(s) 832, 1015
EcoNI CCTNNNNNAGG 1 cut(s) 1067
EcoRII CCWGG 2 cut(s) 279, 502
EcoT14I CCWWGG 1 cut(s) 774
EcoT22I ATGCAT 1 cut(s) 1084
EcoT38I GRGCYC 2 cut(s) 834, 1017
ErhI CCWWGG 1 cut(s) 774
Esp3I CGTCTC 3 cut(s) 12, 245, 1172
FaeI CATG 4 cut(s) 310, 662, 778, 865
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 1 cut(s) 103
FatI CATG 4 cut(s) 306, 658, 774, 861
FauI CCCGC 1 cut(s) 982
FbaI TGATCA 2 cut(s) 549, 631
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 6 cut(s) 64, 87, 90, 93, 246, 249
FokI GGATG 1 cut(s) 725
FriOI GRGCYC 2 cut(s) 834, 1017
Fsp4HI GCNGC 6 cut(s) 64, 87, 90, 93, 246, 249
FspBI CTAG 4 cut(s) 708, 770, 1046, 1130
GluI GCNGC 6 cut(s) 64, 87, 90, 93, 246, 249
GsuI CTGGAG 1 cut(s) 302
HapII CCGG 1 cut(s) 202
HgaI GACGC 1 cut(s) 1028
Hin1II CATG 4 cut(s) 310, 662, 778, 865
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 5 cut(s) 58, 321, 354, 662, 1001
HpaII CCGG 1 cut(s) 202
HphI GGTGA 3 cut(s) 118, 631, 1099
Hpy166II GTNNAC 2 cut(s) 457, 669
Hpy188I TCNGA 1 cut(s) 790
Hpy188III TCNNGA 4 cut(s) 175, 202, 514, 925
Hpy8I GTNNAC 2 cut(s) 457, 669
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 7 cut(s) 35, 311, 476, 586, 652, 683, 878
HpyCH4III ACNGT 2 cut(s) 117, 232
HpyCH4IV ACGT 1 cut(s) 908
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 83, 92, 188, 508, 1159
HpyF3I CTNAG 2 cut(s) 399, 1035
HpySE526I ACGT 1 cut(s) 908
Hsp92II CATG 4 cut(s) 310, 662, 778, 865
Kpn2I TCCGGA 1 cut(s) 201
Ksp22I TGATCA 2 cut(s) 549, 631
Kzo9I GATC 3 cut(s) 276, 549, 631
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 4 cut(s) 73, 76, 104, 260
LweI GCATC 2 cut(s) 542, 1069
MaeI CTAG 4 cut(s) 708, 770, 1046, 1130
MaeII ACGT 1 cut(s) 908
MaeIII GTNAC 2 cut(s) 79, 746
MalI GATC 3 cut(s) 278, 551, 633
MboI GATC 3 cut(s) 276, 549, 631
MboII GAAGA 7 cut(s) 61, 217, 481, 733, 803, 940, 1127
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 834, 1017
MluCI AATT 3 cut(s) 155, 890, 950
MlyI GAGTC 3 cut(s) 363, 671, 1010
MnlI CCTC 9 cut(s) 112, 131, 140, 265, 277, 324, 679, 1048, 1063
Mph1103I ATGCAT 1 cut(s) 1084
MroI TCCGGA 1 cut(s) 201
MroXI GAANNNNTTC 2 cut(s) 383, 571
MseI TTAA 4 cut(s) 729, 819, 867, 960
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 2 cut(s) 281, 504
Mva1269I GAATGC 2 cut(s) 376, 451
MvaI CCWGG 2 cut(s) 281, 504
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 6 cut(s) 39, 83, 92, 188, 508, 1159
NcoI CCATGG 1 cut(s) 774
NdeII GATC 3 cut(s) 276, 549, 631
NheI GCTAGC 1 cut(s) 1129
NlaIII CATG 4 cut(s) 310, 662, 778, 865
NlaIV GGNNCC 3 cut(s) 200, 574, 1096
NsiI ATGCAT 1 cut(s) 1084
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 2 cut(s) 376, 451
PdmI GAANNNNTTC 2 cut(s) 383, 571
PfeI GAWTC 2 cut(s) 58, 321
PflMI CCANNNNNTGG 1 cut(s) 909
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 6 cut(s) 65, 88, 91, 94, 247, 250
PleI GAGTC 3 cut(s) 362, 670, 1009
PpsI GAGTC 3 cut(s) 362, 670, 1009
PscI ACATGT 1 cut(s) 306
Psp124BI GAGCTC 2 cut(s) 834, 1017
Psp6I CCWGG 2 cut(s) 279, 502
PspGI CCWGG 2 cut(s) 279, 502
PspN4I GGNNCC 3 cut(s) 200, 574, 1096
PspPI GGNCC 1 cut(s) 1095
PstI CTGCAG 2 cut(s) 94, 1068
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 914
RsaNI GTAC 1 cut(s) 913
RseI CAYNNNNRTG 1 cut(s) 860
SacI GAGCTC 2 cut(s) 834, 1017
SaqAI TTAA 4 cut(s) 729, 819, 867, 960
SatI GCNGC 6 cut(s) 64, 87, 90, 93, 246, 249
Sau3AI GATC 3 cut(s) 276, 549, 631
Sau96I GGNCC 1 cut(s) 1095
SbfI CCTGCAGG 1 cut(s) 1068
SchI GAGTC 3 cut(s) 363, 671, 1010
ScrFI CCNGG 2 cut(s) 281, 504
SdaI CCTGCAGG 1 cut(s) 1068
SduI GDGCHC 2 cut(s) 834, 1017
SfaNI GCATC 2 cut(s) 542, 1069
SfcI CTRYAG 2 cut(s) 90, 1064
SinI GGWCC 1 cut(s) 1095
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse8387I CCTGCAGG 1 cut(s) 1068
Sse9I AATT 3 cut(s) 155, 890, 950
SsiI CCGC 5 cut(s) 64, 75, 84, 246, 989
SspI AATATT 1 cut(s) 1029
SspMI CTAG 4 cut(s) 708, 770, 1046, 1130
SstI GAGCTC 2 cut(s) 834, 1017
StyD4I CCNGG 2 cut(s) 279, 502
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 2 cut(s) 117, 232
TaiI ACGT 1 cut(s) 911
TaqI TCGA 6 cut(s) 270, 387, 515, 924, 1050, 1125
TasI AATT 3 cut(s) 155, 890, 950
TauI GCSGC 2 cut(s) 66, 248
TfiI GAWTC 2 cut(s) 58, 321
Tru1I TTAA 4 cut(s) 729, 819, 867, 960
Tru9I TTAA 4 cut(s) 729, 819, 867, 960
TscAI CASTG 4 cut(s) 586, 862, 886, 1160
TseI GCWGC 4 cut(s) 86, 89, 92, 248
TspDTI ATGAA 2 cut(s) 148, 912
TspGWI ACGGA 2 cut(s) 179, 731
TspRI CASTG 4 cut(s) 586, 862, 886, 1160
Van91I CCANNNNNTGG 1 cut(s) 909
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 1095
XagI CCTNNNNNAGG 1 cut(s) 1067
XapI RAATTY 2 cut(s) 155, 950
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 668
XmnI GAANNNNTTC 2 cut(s) 383, 571
XspI CTAG 4 cut(s) 708, 770, 1046, 1130
Zsp2I ATGCAT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.