Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

1645119 .. 1647527

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATTTCGCCAACGAGGGTTTCGCCGTTAGAATCCTTTCCCTTTATGGAAAGGCCGGGATGTTCGATAATGCCCAGAACGTGTTCGCGCACACCGTGCTGTCCTTCAACGCGCTTATGGGCGCGTACGTGAACTCCAAGAGGTTTGATATGGCTGAGAAGTTATTTAAGGAGGTGCCGGAGAAGTTGTCTGTTGAGCCGGATTTGGTGTCTTACAATATTTTGATCAAGGCTTTATGTAAGATGGGTTCGTTTGATTCCGCGGTTTCGGTGCTTGAGAAGATGGAGAAGAAGGGTGTGAAGCTGGATCGGTTTTCGGATGCTGAGAAGATATGGGGTGTAATGGTGGAGAAGAAAGTTGTTCCGGATATTAGGAGCTATAATGCCAAGTTGATGGGATTGGCTTTGGAGAAGAGGAGTAAAGAAGGGGCTGAATTGGTTGAGGAGAATTCCATCAGTAGTGGAGTGGAACCTGATGTGTTTAGCTTCAATGCCTTGATTAAGGGATTTTTGGGTGAGGGGAACTTGGAGGAAGCTAAAAGGTGGTATGGTGAACTAGTGAAGAGTGGTTGTGCTCCGGATAAATGGACTTTCGAGACGCTTGTTCCCTTTGCTTGTGAGAAGGGTGATGTGGATTATGGTTTTGAGCTCTGCAAGGATATTTTCCAAAGGCGCCGTCTTGCTAGTGCGGCAATGTTGCAGCCTGTGGTGGATGGTCTGGTACGTACGGTTAAGGCCTCTATGATTGAGCAGGCAAAGGAACTTGTCAAACTCGGGAACACTAATTCCTACAAACGTTTTAACTTGAAGTTGCCTTCAGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

276

Amino Acids

30.76

Weight (kDa)

7.56

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	32 - 81	3.3e-12	PPR repeat family
PPR_3	PF13812	33 - 80	7.5e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	40 - 103	5.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	65 - 96	3.9e-11	PPR repeat
PPR_2	PF13041	67 - 105	8.7e-11	PPR repeat family
PPR	PF01535	70 - 100	6e-09	PPR repeat
PPR_2	PF13041	158 - 202	1.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	175, 672
AccII	CGCG	4 cut(s)	89, 113, 125, 263
AccIII	TCCGGA	2 cut(s)	364, 577
AciI	CCGC	3 cut(s)	261, 263, 689
AclI	AACGTT	1 cut(s)	796
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	1 cut(s)	673
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	3 cut(s)	128, 723, 727
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	109, 490, 808
AhlI	ACTAGT	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	770, 802
AluBI	AGCT	5 cut(s)	304, 378, 486, 536, 649
AluI	AGCT	5 cut(s)	304, 378, 486, 536, 649
Alw21I	GWGCWC	2 cut(s)	577, 651
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	773
Aor13HI	TCCGGA	2 cut(s)	364, 577
AoxI	GGCC	2 cut(s)	54, 735
ApeKI	GCWGC	1 cut(s)	700
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	661, 693
Asp700I	GAANNNNTTC	2 cut(s)	37, 83
AspLEI	GCGC	4 cut(s)	91, 115, 125, 675
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	527, 563, 638
AvaI	CYCGRG	1 cut(s)	773
BanI	GGYRCC	2 cut(s)	175, 672
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	577, 651
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	5 cut(s)	238, 277, 388, 461, 707
BceAI	ACGGC	2 cut(s)	11, 660
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	590
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	2 cut(s)	557, 684
BfoI	RGCGCY	1 cut(s)	676
BisI	GCNGC	2 cut(s)	690, 701
BlsI	GCNGC	2 cut(s)	691, 702
Bme1390I	CCNGG	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	773
BmiI	GGNNCC	3 cut(s)	177, 471, 674
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	2 cut(s)	130, 725
BsaHI	GRCGYC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	2 cut(s)	364, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 173, 203
Bse3DI	GCAATG	1 cut(s)	699
BseAI	TCCGGA	2 cut(s)	364, 577
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	66, 325, 718
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	2 cut(s)	147, 315
BseRI	GAGGAG	2 cut(s)	430, 458
BseXI	GCAGC	1 cut(s)	712
Bsh1236I	CGCG	4 cut(s)	89, 113, 125, 263
BshFI	GGCC	2 cut(s)	56, 737
BshNI	GGYRCC	2 cut(s)	175, 672
BsiHKAI	GWGCWC	2 cut(s)	577, 651
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	5 cut(s)	57, 179, 200, 365, 578
BsiWI	CGTACG	2 cut(s)	126, 725
BsmAI	GTCTC	1 cut(s)	590
BsmBI	CGTCTC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	56, 737
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	2 cut(s)	577, 651
Bsp13I	TCCGGA	2 cut(s)	364, 577
Bsp143I	GATC	2 cut(s)	225, 307
BspACI	CCGC	3 cut(s)	261, 263, 689
BspANI	GGCC	2 cut(s)	56, 737
BspCNI	CTCAG	2 cut(s)	148, 316
BspEI	TCCGGA	2 cut(s)	364, 577
BspFNI	CGCG	4 cut(s)	89, 113, 125, 263
BspLI	GGNNCC	3 cut(s)	177, 471, 674
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	175, 672
BsrDI	GCAATG	1 cut(s)	699
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	225, 307
BssNI	GRCGYC	1 cut(s)	673
Bst4CI	ACNGT	2 cut(s)	97, 730
Bst6I	CTCTTC	2 cut(s)	407, 557
BstACI	GRCGYC	1 cut(s)	673
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstBAI	YACGTR	2 cut(s)	130, 725
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	2 cut(s)	156, 324
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	66, 325, 718
BstFNI	CGCG	4 cut(s)	89, 113, 125, 263
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	4 cut(s)	91, 115, 125, 675
BstKTI	GATC	2 cut(s)	228, 310
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	2 cut(s)	225, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 689
BstSCI	CCNGG	1 cut(s)	56
BstSNI	TACGTA	1 cut(s)	725
BstUI	CGCG	4 cut(s)	89, 113, 125, 263
BstV1I	GCAGC	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	56, 737
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	66, 325, 718
Cac8I	GCNNGC	1 cut(s)	753
CfoI	GCGC	4 cut(s)	91, 115, 125, 675
Cfr42I	CCGCGG	1 cut(s)	264
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	3 cut(s)	127, 722, 726
CviQI	GTAC	3 cut(s)	127, 722, 726
DdeI	CTNAG	2 cut(s)	156, 324
DinI	GGCGCC	1 cut(s)	674
DpnI	GATC	2 cut(s)	227, 309
DpnII	GATC	2 cut(s)	225, 307
DraIII	CACNNNGTG	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	407, 557
EarI	CTCTTC	2 cut(s)	407, 557
Ecl136II	GAGCTC	1 cut(s)	649
Eco105I	TACGTA	1 cut(s)	725
Eco147I	AGGCCT	1 cut(s)	737
Eco24I	GRGCYC	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	651
EgeI	GGCGCC	1 cut(s)	674
EheI	GGCGCC	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	590
FaiI	YATR	9 cut(s)	48, 119, 152, 238, 334, 381, 549, 639, 743
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	690, 701
FokI	GGATG	3 cut(s)	73, 332, 725
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	2 cut(s)	690, 701
FspBI	CTAG	2 cut(s)	557, 684
GlaI	GCGC	4 cut(s)	90, 114, 124, 674
GluI	GCNGC	2 cut(s)	690, 701
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	2 cut(s)	56, 737
HapII	CCGG	5 cut(s)	57, 179, 200, 365, 578
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	4 cut(s)	91, 115, 125, 675
Hin1I	GRCGYC	1 cut(s)	673
Hin6I	GCGC	4 cut(s)	89, 113, 123, 673
HinP1I	GCGC	4 cut(s)	89, 113, 123, 673
HinfI	GANTC	2 cut(s)	33, 257
HpaII	CCGG	5 cut(s)	57, 179, 200, 365, 578
HphI	GGTGA	3 cut(s)	527, 563, 638
Hpy166II	GTNNAC	2 cut(s)	133, 554
Hpy188I	TCNGA	2 cut(s)	319, 820
Hpy188III	TCNNGA	4 cut(s)	365, 578, 595, 775
Hpy8I	GTNNAC	2 cut(s)	133, 554
HpyAV	CCTTC	5 cut(s)	115, 286, 419, 616, 825
HpyCH4III	ACNGT	2 cut(s)	97, 730
HpyCH4IV	ACGT	4 cut(s)	81, 129, 724, 796
HpyCH4V	TGCA	2 cut(s)	654, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 689
HpyF3I	CTNAG	2 cut(s)	156, 324
HpySE526I	ACGT	4 cut(s)	81, 129, 724, 796
Hsp92I	GRCGYC	1 cut(s)	673
HspAI	GCGC	4 cut(s)	89, 113, 123, 673
KasI	GGCGCC	1 cut(s)	672
Kpn2I	TCCGGA	2 cut(s)	364, 577
Ksp22I	TGATCA	1 cut(s)	225
KspI	CCGCGG	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	225, 307
LmnI	GCTCC	2 cut(s)	375, 580
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	557, 684
MaeII	ACGT	4 cut(s)	81, 129, 724, 796
MalI	GATC	2 cut(s)	227, 309
MboI	GATC	2 cut(s)	225, 307
MboII	GAAGA	6 cut(s)	292, 301, 340, 364, 424, 574
MhlI	GDGCHC	2 cut(s)	577, 651
MluCI	AATT	3 cut(s)	434, 448, 784
Mly113I	GGCGCC	1 cut(s)	673
MnlI	CCTC	8 cut(s)	10, 135, 166, 408, 436, 511, 523, 748
MroI	TCCGGA	2 cut(s)	364, 577
MroXI	GAANNNNTTC	2 cut(s)	37, 83
MseI	TTAA	4 cut(s)	168, 501, 732, 801
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	5 cut(s)	57, 179, 200, 365, 578
MspR9I	CCNGG	1 cut(s)	58
MvnI	CGCG	4 cut(s)	89, 113, 125, 263
MwoI	GCNNNNNNNGC	2 cut(s)	97, 689
NarI	GGCGCC	1 cut(s)	673
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	225, 307
NlaIV	GGNNCC	3 cut(s)	177, 471, 674
PceI	AGGCCT	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	37, 83
PfeI	GAWTC	2 cut(s)	33, 257
Pfl23II	CGTACG	2 cut(s)	126, 725
PkrI	GCNGC	2 cut(s)	691, 702
PluTI	GGCGCC	1 cut(s)	676
Ppu21I	YACGTR	2 cut(s)	130, 725
Psp124BI	GAGCTC	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	796
PspLI	CGTACG	2 cut(s)	126, 725
PspN4I	GGNNCC	3 cut(s)	177, 471, 674
PsrI	GAACNNNNNNTAC	2 cut(s)	232, 264
RsaI	GTAC	3 cut(s)	128, 723, 727
RsaNI	GTAC	3 cut(s)	127, 722, 726
SacI	GAGCTC	1 cut(s)	651
SacII	CCGCGG	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	168, 501, 732, 801
SatI	GCNGC	2 cut(s)	690, 701
Sau3AI	GATC	2 cut(s)	225, 307
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	2 cut(s)	577, 651
SfaNI	GCATC	1 cut(s)	310
SfoI	GGCGCC	1 cut(s)	674
Sfr303I	CCGCGG	1 cut(s)	264
SgrBI	CCGCGG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SnaBI	TACGTA	1 cut(s)	725
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	3 cut(s)	434, 448, 784
SseBI	AGGCCT	1 cut(s)	737
SsiI	CCGC	3 cut(s)	261, 263, 689
SspDI	GGCGCC	1 cut(s)	672
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	557, 684
SstI	GAGCTC	1 cut(s)	651
StuI	AGGCCT	1 cut(s)	737
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	97, 730
TaiI	ACGT	4 cut(s)	84, 132, 727, 799
TaqI	TCGA	2 cut(s)	66, 594
TasI	AATT	3 cut(s)	434, 448, 784
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	2 cut(s)	33, 257
Tru1I	TTAA	4 cut(s)	168, 501, 732, 801
Tru9I	TTAA	4 cut(s)	168, 501, 732, 801
TseI	GCWGC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	448
XmnI	GAANNNNTTC	2 cut(s)	37, 83
XspI	CTAG	2 cut(s)	557, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.