Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55890 AT3G13160 |
| fragaria_vesca | FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160 |
| malus_domestica | MD05G1334700.v1.1 |
| prunus_persica | Prupe.4G030500_v2.0.a1 |
| pyrus_communis | pycom05g30630 pycom10g26130 |
| rosa_chinensis | RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781 |
| rosa_laevigata | RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261 |
| rosa_multiflora | Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027 |
| rosa_roxburghii | Rroxscaffold_1G00070810 Rroxscaffold_1G00070830 |
| rosa_samantha | Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800 |
| rosa_wichuraiana | Rw5G004020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 192 |
| AciI | CCGC | 2 cut(s) | 61, 196 |
| AcyI | GRCGYC | 1 cut(s) | 193 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 22, 202 |
| AgsI | TTSAA | 1 cut(s) | 11 |
| AluBI | AGCT | 3 cut(s) | 7, 56, 169 |
| AluI | AGCT | 3 cut(s) | 7, 56, 169 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| Alw26I | GTCTC | 1 cut(s) | 110 |
| AoxI | GGCC | 1 cut(s) | 246 |
| ApeKI | GCWGC | 3 cut(s) | 4, 209, 220 |
| AspLEI | GCGC | 1 cut(s) | 195 |
| AsuHPI | GGTGA | 1 cut(s) | 158 |
| BanI | GGYRCC | 1 cut(s) | 192 |
| BanII | GRGCYC | 1 cut(s) | 171 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BbvI | GCAGC | 3 cut(s) | 16, 221, 232 |
| BccI | CCATC | 2 cut(s) | 136, 227 |
| BcoDI | GTCTC | 1 cut(s) | 110 |
| BfaI | CTAG | 1 cut(s) | 277 |
| BfoI | RGCGCY | 1 cut(s) | 196 |
| BisI | GCNGC | 4 cut(s) | 5, 196, 210, 221 |
| BlpI | GCTNAGC | 1 cut(s) | 57 |
| BlsI | GCNGC | 4 cut(s) | 6, 197, 211, 222 |
| BmiI | GGNNCC | 1 cut(s) | 194 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 57 |
| BsaHI | GRCGYC | 1 cut(s) | 193 |
| BsaI | GGTCTC | 1 cut(s) | 110 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 22, 202 |
| BseGI | GGATG | 2 cut(s) | 55, 238 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 22, 202 |
| BseXI | GCAGC | 3 cut(s) | 16, 221, 232 |
| BsgI | GTGCAG | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 248 |
| BshNI | GGYRCC | 1 cut(s) | 192 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 22, 202 |
| BsmAI | GTCTC | 1 cut(s) | 110 |
| BsnI | GGCC | 1 cut(s) | 248 |
| Bso31I | GGTCTC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 57 |
| BspACI | CCGC | 2 cut(s) | 61, 196 |
| BspANI | GGCC | 1 cut(s) | 248 |
| BspLI | GGNNCC | 1 cut(s) | 194 |
| BspT107I | GGYRCC | 1 cut(s) | 192 |
| BspTNI | GGTCTC | 1 cut(s) | 110 |
| BssNI | GRCGYC | 1 cut(s) | 193 |
| Bst6I | CTCTTC | 1 cut(s) | 77 |
| BstACI | GRCGYC | 1 cut(s) | 193 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 20 |
| BstF5I | GGATG | 2 cut(s) | 55, 238 |
| BstH2I | RGCGCY | 1 cut(s) | 196 |
| BstHHI | GCGC | 1 cut(s) | 195 |
| BstMAI | GTCTC | 1 cut(s) | 110 |
| BstV1I | GCAGC | 3 cut(s) | 16, 221, 232 |
| BsuRI | GGCC | 1 cut(s) | 248 |
| BtsCI | GGATG | 2 cut(s) | 55, 238 |
| CfoI | GCGC | 1 cut(s) | 195 |
| CviJI | RGCY | 5 cut(s) | 7, 56, 169, 223, 248 |
| CviKI_1 | RGCY | 5 cut(s) | 7, 56, 169, 223, 248 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DinI | GGCGCC | 1 cut(s) | 194 |
| Eam1104I | CTCTTC | 1 cut(s) | 77 |
| EarI | CTCTTC | 1 cut(s) | 77 |
| Ecl136II | GAGCTC | 1 cut(s) | 169 |
| Eco147I | AGGCCT | 1 cut(s) | 248 |
| Eco24I | GRGCYC | 1 cut(s) | 171 |
| Eco31I | GGTCTC | 1 cut(s) | 110 |
| Eco53kI | GAGCTC | 1 cut(s) | 169 |
| EcoICRI | GAGCTC | 1 cut(s) | 169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 20 |
| EcoT38I | GRGCYC | 1 cut(s) | 171 |
| EgeI | GGCGCC | 1 cut(s) | 194 |
| EheI | GGCGCC | 1 cut(s) | 194 |
| FaiI | YATR | 2 cut(s) | 98, 159 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 196, 210, 221 |
| FokI | GGATG | 2 cut(s) | 62, 245 |
| FriOI | GRGCYC | 1 cut(s) | 171 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 196, 210, 221 |
| FspBI | CTAG | 1 cut(s) | 277 |
| GlaI | GCGC | 1 cut(s) | 194 |
| GluI | GCNGC | 4 cut(s) | 5, 196, 210, 221 |
| HaeII | RGCGCY | 1 cut(s) | 196 |
| HaeIII | GGCC | 1 cut(s) | 248 |
| HhaI | GCGC | 1 cut(s) | 195 |
| Hin1I | GRCGYC | 1 cut(s) | 193 |
| Hin6I | GCGC | 1 cut(s) | 193 |
| HinP1I | GCGC | 1 cut(s) | 193 |
| HphI | GGTGA | 1 cut(s) | 158 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 115 |
| HpyAV | CCTTC | 1 cut(s) | 139 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 174, 209, 220 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 193 |
| HspAI | GCGC | 1 cut(s) | 193 |
| KasI | GGCGCC | 1 cut(s) | 192 |
| LpnPI | CCDG | 2 cut(s) | 224, 237 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 221, 232 |
| MaeI | CTAG | 1 cut(s) | 277 |
| MboII | GAAGA | 1 cut(s) | 94 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| Mly113I | GGCGCC | 1 cut(s) | 193 |
| MnlI | CCTC | 4 cut(s) | 31, 253, 258, 259 |
| NarI | GGCGCC | 1 cut(s) | 193 |
| NlaIV | GGNNCC | 1 cut(s) | 194 |
| PceI | AGGCCT | 1 cut(s) | 248 |
| PkrI | GCNGC | 4 cut(s) | 6, 197, 211, 222 |
| PluTI | GGCGCC | 1 cut(s) | 196 |
| Psp124BI | GAGCTC | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 1 cut(s) | 194 |
| SacI | GAGCTC | 1 cut(s) | 171 |
| SatI | GCNGC | 4 cut(s) | 5, 196, 210, 221 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SetI | ASST | 3 cut(s) | 9, 58, 171 |
| SfoI | GGCGCC | 1 cut(s) | 194 |
| SseBI | AGGCCT | 1 cut(s) | 248 |
| SsiI | CCGC | 2 cut(s) | 61, 196 |
| SspDI | GGCGCC | 1 cut(s) | 192 |
| SspMI | CTAG | 1 cut(s) | 277 |
| SstI | GAGCTC | 1 cut(s) | 171 |
| StuI | AGGCCT | 1 cut(s) | 248 |
| TaqI | TCGA | 1 cut(s) | 114 |
| TauI | GCSGC | 1 cut(s) | 198 |
| TseI | GCWGC | 3 cut(s) | 4, 209, 220 |
| TspDTI | ATGAA | 1 cut(s) | 66 |
| TspGWI | ACGGA | 1 cut(s) | 241 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 20 |
| XspI | CTAG | 1 cut(s) | 277 |