Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002210.1

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

74358 .. 74795

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002210.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggtggagaagaatgttgttcctgatattaggagctataatgccaagatactggggttggctttggagaagaggagtgaagaaggggctcaattagttgaagagttgaggagtattggagtgaaacctaatgtgttcaccttcaataccttgattaagggctttgtgaatgagtgtaagttggatgaagctaagcggtggtatagtgaaatagagaagagtagttgtgctccggataaacggactttcgagatgcttgctccctttgtttgcgagaatggtgatgtggagtttgcttttgagatctgcaaggacattttccaaaggtgccgccttgtgtgtgcggcactgttgcagcctgtggtggatggtgtggtcaaggcgttcatgattgaggtggcaaaggaacttgtcaaacttgggaacactaataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

145

Amino Acids

16.35

Weight (kDa)

5.37

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	3 cut(s)	196, 331, 344
AgsI	TTSAA	2 cut(s)	101, 145
AluBI	AGCT	2 cut(s)	36, 191
AluI	AGCT	2 cut(s)	36, 191
Alw21I	GWGCWC	1 cut(s)	232
Aor13HI	TCCGGA	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	130, 293
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	3 cut(s)	331, 345, 356
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	332, 346, 357
BmiI	GGNNCC	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	232
BseGI	GGATG	2 cut(s)	190, 373
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	2 cut(s)	88, 124
BseXI	GCAGC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	91, 232
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	3 cut(s)	196, 331, 344
BspEI	TCCGGA	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	3 cut(s)	65, 96, 212
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	190, 373
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	190, 373
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	387
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	6 cut(s)	36, 62, 89, 162, 191, 358
CviKI_1	RGCY	6 cut(s)	36, 62, 89, 162, 191, 358
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	65, 96, 212
EarI	CTCTTC	3 cut(s)	65, 96, 212
Eco24I	GRGCYC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	391
FaiI	YATR	3 cut(s)	39, 204, 389
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	331, 345, 356
FokI	GGATG	2 cut(s)	197, 380
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	331, 345, 356
GluI	GCNGC	3 cut(s)	331, 345, 356
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	1 cut(s)	391
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	130, 293
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188III	TCNNGA	4 cut(s)	23, 233, 250, 388
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	77, 151
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	309, 355
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	391
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	33, 235, 265
LpnPI	CCDG	4 cut(s)	36, 38, 246, 372
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	243
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	5 cut(s)	22, 82, 92, 113, 229
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	91, 232
MluCI	AATT	2 cut(s)	92, 433
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	66, 102, 388
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	2 cut(s)	156, 436
MspI	CCGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	329
PagI	TCATGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	332, 346, 357
PspN4I	GGNNCC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	156, 436
SatI	GCNGC	3 cut(s)	331, 345, 356
Sau3AI	GATC	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	91, 232
SetI	ASST	7 cut(s)	38, 130, 143, 152, 193, 329, 399
SfaNI	GCATC	1 cut(s)	243
Sse9I	AATT	2 cut(s)	92, 433
SsiI	CCGC	3 cut(s)	196, 331, 344
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	92, 433
TauI	GCSGC	2 cut(s)	333, 347
Tru1I	TTAA	2 cut(s)	156, 436
Tru9I	TTAA	2 cut(s)	156, 436
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	201, 376
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.