Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

3116529 .. 3117221

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTTAGATAATGCCCAGAAGGTGTTTGACGAAATGCCTCAGAGAAACTGTGGGCGTACAATGTTGTCCTTCAATGTCCTCCTGGGGGCCTGTGTGAACTCCAACAAGTTTGATATGGTTGAGAAAATTTTCGGGGACGTGCCGGAGAAGTTGTCGATTGAGCCTGATTTGGTGTCGTACAATACTGTGATCGAGGCATCTTGTAAGATGGATTCGTTTGACTGTACGGTTTCGGTGATTGAGCTGATGGACAAGAAGGGTGTGAAGCCGAATGTAATCACGTTTAATACGATTTTGGATTGCTTGTATGGGAGTAAGCGGTTTTCAGATGCTGAAAAAATATGGGGTCAAATGGCGAAGAAGAATGTTGTTCCTGATATTAGGAGCTATAATGCCAAGTTACTGGGGTTGGCTTTGGAGAAGAGGAGTGAAGAAGGGGCTCAATTAGTTGAAGAGTTGAGGAGTATTGGAATGAGTGTAACTTGGATGAATCTAAGCGGTGGTATGGTGAAACAGAGAAGAGTAGTTGTGCTCCGGATAAACGTACTTTCGAAATGCTTGCTCCCTTTGTTTGTGAGAAGGGTGATGTGGAGTTTGCTTTTGAGCTCTGCAAGGACATTTTCCAAAGGCGCCACCTTGTGTGTGCGGCACTGTTGCAGCCTGTGGTGGATGGTCTGGTCAAGGCCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

230

Amino Acids

26.04

Weight (kDa)

9.07

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	50 - 101	6.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	55 - 102	2.5e-11	PPR repeat family
PPR_2	PF13041	90 - 136	3.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	3 cut(s)	319, 498, 646
AcsI	RAATTY	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	630
AdeI	CACNNNGTG	1 cut(s)	639
AfaI	GTAC	4 cut(s)	58, 179, 226, 546
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	73, 452
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	244, 387, 606
AluI	AGCT	3 cut(s)	244, 387, 606
Alw21I	GWGCWC	2 cut(s)	534, 608
AlwNI	CAGNNNCTG	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	534
AoxI	GGCC	2 cut(s)	87, 683
ApeKI	GCWGC	1 cut(s)	657
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	247, 520, 595
AsuII	TTCGAA	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	442, 608
Bbv12I	GWGCWC	2 cut(s)	534, 608
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	3 cut(s)	202, 241, 664
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	633
BisI	GCNGC	2 cut(s)	647, 658
BlsI	GCNGC	2 cut(s)	648, 659
Bme1390I	CCNGG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	88, 631
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	206, 319
BmuI	ACTGGG	1 cut(s)	413
Bpu14I	TTCGAA	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	492, 675
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	2 cut(s)	439, 475
BseXI	GCAGC	1 cut(s)	669
BshFI	GGCC	2 cut(s)	89, 685
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	2 cut(s)	534, 608
BsiSI	CCGG	2 cut(s)	143, 535
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	89, 685
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	442, 534, 608
Bsp13I	TCCGGA	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	3 cut(s)	319, 498, 646
BspANI	GGCC	2 cut(s)	89, 685
BspCNI	CTCAG	1 cut(s)	52
BspEI	TCCGGA	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	88, 631
BspT104I	TTCGAA	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	5 cut(s)	50, 187, 224, 229, 653
Bst6I	CTCTTC	3 cut(s)	416, 447, 514
BstACI	GRCGYC	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	2 cut(s)	39, 494
BstF5I	GGATG	2 cut(s)	492, 675
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	669
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	89, 685
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	492, 675
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	560
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	57, 178, 225, 545
CviAII	CATG	1 cut(s)	690
CviQI	GTAC	4 cut(s)	57, 178, 225, 545
DdeI	CTNAG	2 cut(s)	39, 494
DinI	GGCGCC	1 cut(s)	631
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DraIII	CACNNNGTG	1 cut(s)	639
Eam1104I	CTCTTC	3 cut(s)	416, 447, 514
EarI	CTCTTC	3 cut(s)	416, 447, 514
Ecl136II	GAGCTC	1 cut(s)	606
Eco147I	AGGCCT	1 cut(s)	685
Eco24I	GRGCYC	2 cut(s)	442, 608
Eco53kI	GAGCTC	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	442, 608
EgeI	GGCGCC	1 cut(s)	631
EheI	GGCGCC	1 cut(s)	631
FaeI	CATG	1 cut(s)	693
FaiI	YATR	6 cut(s)	116, 309, 343, 390, 506, 691
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	689
Fnu4HI	GCNGC	2 cut(s)	647, 658
FokI	GGATG	2 cut(s)	499, 682
FriOI	GRGCYC	2 cut(s)	442, 608
Fsp4HI	GCNGC	2 cut(s)	647, 658
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	2 cut(s)	647, 658
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	89, 685
HapII	CCGG	2 cut(s)	143, 535
HhaI	GCGC	1 cut(s)	632
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	693
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HinfI	GANTC	2 cut(s)	212, 490
HpaII	CCGG	2 cut(s)	143, 535
HphI	GGTGA	3 cut(s)	247, 520, 595
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	42, 328
Hpy188III	TCNNGA	2 cut(s)	374, 535
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	5 cut(s)	13, 79, 250, 428, 573
HpyCH4III	ACNGT	5 cut(s)	50, 187, 224, 229, 653
HpyCH4IV	ACGT	3 cut(s)	138, 281, 543
HpyCH4V	TGCA	2 cut(s)	611, 657
HpyF3I	CTNAG	2 cut(s)	39, 494
HpySE526I	ACGT	3 cut(s)	138, 281, 543
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	1 cut(s)	693
HspAI	GCGC	1 cut(s)	630
KasI	GGCGCC	1 cut(s)	629
Kpn2I	TCCGGA	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	3 cut(s)	384, 537, 567
Lsp1109I	GCAGC	1 cut(s)	669
LweI	GCATC	2 cut(s)	206, 319
MaeII	ACGT	3 cut(s)	138, 281, 543
MaeIII	GTNAC	2 cut(s)	399, 478
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	6 cut(s)	370, 373, 433, 443, 464, 531
MhlI	GDGCHC	3 cut(s)	442, 534, 608
MluCI	AATT	2 cut(s)	126, 443
Mly113I	GGCGCC	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	48, 89, 187, 417, 453
MroI	TCCGGA	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	285
MspI	CCGG	2 cut(s)	143, 535
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	630
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	693
NlaIV	GGNNCC	2 cut(s)	88, 631
NspV	TTCGAA	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	212, 490
PkrI	GCNGC	2 cut(s)	648, 659
PluTI	GGCGCC	1 cut(s)	633
Psp124BI	GAGCTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	88, 631
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	4 cut(s)	58, 179, 226, 546
RsaNI	GTAC	4 cut(s)	57, 178, 225, 545
SacI	GAGCTC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	647, 658
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	442, 534, 608
SetI	ASST	8 cut(s)	24, 141, 246, 284, 389, 546, 608, 638
SfaNI	GCATC	2 cut(s)	206, 319
SfoI	GGCGCC	1 cut(s)	631
SfuI	TTCGAA	1 cut(s)	551
Sse9I	AATT	2 cut(s)	126, 443
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	3 cut(s)	319, 498, 646
SspDI	GGCGCC	1 cut(s)	629
SstI	GAGCTC	1 cut(s)	608
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	5 cut(s)	50, 187, 224, 229, 653
TaiI	ACGT	3 cut(s)	141, 284, 546
TaqI	TCGA	3 cut(s)	155, 192, 551
TasI	AATT	2 cut(s)	126, 443
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	2 cut(s)	212, 490
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	656
TseI	GCWGC	1 cut(s)	657
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	656
XapI	RAATTY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.